SGID Silkworm Genome Informatics Database
Gene
KWMTBOMO08925
Pre Gene Modal
BGIBMGA007812
Annotation
PREDICTED:_regulating_synaptic_membrane_exocytosis_protein_2_isoform_X7_[Bombyx_mori]
Location
Bomo_Chr15(-):8273856-8284823      View in EpiBrowser
Location in the cell
Nuclear   Reliability : 4.195
 

Sequence

CDS
ATGCGCGCGCATTCACTTTGCGCAGGTCGAAGCGCGTCCGGGCTACATTACGGTATACAGAATCGATCAATAAAGGCACTGACGTCAGTGGAAAGCGACGCTCGATTGGCCCGGTGGTCATTATTAAGTAAACCATCGGCGGGGTGGCGCGGTACGGTTGTCGTAGCGGGCACAACACCGCAGCACGCGGCGGGCCCGCGCACCGCTCGCGGCTCGCCGCCGCACGCCATGGCTGACATGCCGGACCTTTCGCACCTCACGCCCGAGGAGCGCGCCATCATCGAGGGAGTCATAATGCGCCAAAGGCAGGAGGAGCAGCGCGAACACGAAATTATGAGACGTAAACAAGACGAAGTCGCAGTGCTAGAGCAAACAATTCGTACAAGAAACGAACTTCAAAGAGCTGCGGGTGTGGAACTTGCTGCCACCTGCCATATTTGTTTGAAGACAAAATTCGCGGACGGCGTTGGACATTCTTGCCACTATTGCCGAGTGAGATGCTGCGCTCGCTGTGGTGGCAAAGTCACTTTACGATCTAATAAGGTTATTTGGGTTTGTATCCTTTGCCGAAAAAAACAAGAACTATTATCAAAAACTGGACAATGGATACACAAAAGCACAGGTCCAGATTCTATGTTATGGAGGATGGAGTCTGAGTTGCGAGGCCTGCTGCCCCAAGACGATGCTTCGCACGATAAAAGACAGAAACTCGAGCGAGCGCATAGTGCCGCGGAAAAAGAAAACCAGCCACTTCAGAGATCAGGAAGTGCCCTACGACGTCAGTATAGTCAACAAGAACAAAGGTGCTACGGAGAACTGGAGGGATTGGCGAGAACGCACCCTCACCTGGTACATTCAAGACAGAAAGCCGCCTATGGTGTAGTTGACACTATGATCTCGGCGCCTCTACCCGCGCAACTGTTACCACACGGCCCTGCTGGTAACAGCATGCCCTTACCGCCTCGTTCCTCCTCATCGGACGACGAAGTACCGGAGTGTATCTCCGATGAAAACGACGAGTATCGTGATCGTGGTCCTAGTAGAGATAGGAGCAGTTCCGACAGCTCCCGAAGTCAACGTCAAGCAATATTAAACGAGAAAATGAATAAGTTTTTATCGTTTCCGCCGAGTTGGCAAGCGTCAACGGATGGTTCGCGCGTGATCGGTCACATGGTGCTACGCAAAAGCGTTGTGGAGGGTAGTTCGCACTCTTCTGCAGCAATCCTGGGCTTAAAGGTCGTAGGTGGAAAATTGCTACCCGATGGCATACGTGGTGCTATAATAGAAAAAGTTAAGAAAGGATCAATAGCCGATTTGGAAGGGCAGCTAAGAATCGGAGACGAAGTTTTACAATGGAATGGTGTGCCTCTTCAAGGTCGATCGGCCGAAGAGGTCGCAGCAGTTGTTGCTGACAGCAAGCACGACACTCATGTCGAATTAGTGGTATCACGTTCTCTTCCGGTCACTCGACCTGGAGCTCAGCCATGGAGAAGCCATAAAGAAGTCTACACGGAGACAATGATGGTGGGCGGCTGCGAGAAGCCTAGCGTGCTTGTGACGTCTCCGGGATCTCCAGACGTACACTCGCGGCGTCGATCCAATCGTCACAGTCATCACAACGCAAATGTAGCTGGACGCATACAGCTGAAAATATATTTTGACATAAGTGCCCTACAACTCTTGGTAACCGTGGTATCGGCAAGTGGCTTGACTCCGCGCGCAGACGGCTCGCCTAGATGTCCTTACGCAAAAATATTTTTGCTTCCCGACAAAAGCGAAAAAAGCAAACGAAGAACTAAAACGCTAGCCAATACATTAGAGCCGAGATGGAACCAAACATTCGTTTATTGTGGTATACGTATTACTGACATCAAAAAAAGAACTCTGGAGGTGACAGTGTGGGATTTAAATCGTTACGGGCCGAATGACTTTCTTGGTGAAGTTTTACTTGATCTTGACAACATAATGATGAATCATGAGCCGAACTGGTACACCTTAAAGCCGCATGAAGATTCCAGTAGCTTTTATCGATACCGAGAGGAAGAGGCGGACGGTGATCATTTATCTCCACCATCGACATCGACCTCACGATTATCAGATTCGGACACACCAAGTGAATGTGACCTACGACGTCATCATTCTCTTTCAAGCCTCGCGTCTAGCTCTAGTCCGCCACCTCCTCATGATAGGATGGATATGGAAGAGGTAAAACTAAGTAACTGCACATATTTTACAGTTAATGACGACAGAGGAGGCGACGGCTCGCGGTTGCCGACACACGCGTATGCTCCTCGATTCCAATCACGGTCGGCGACCGCCACACCCACCACGAGTCCCAAGAAACGCCAGTTGCCTCAGATACCGCACCAGGTAAGGGATTAA
Protein
MRAHSLCAGRSASGLHYGIQNRSIKALTSVESDARLARWSLLSKPSAGWRGTVVVAGTTPQHAAGPRTARGSPPHAMADMPDLSHLTPEERAIIEGVIMRQRQEEQREHEIMRRKQDEVAVLEQTIRTRNELQRAAGVELAATCHICLKTKFADGVGHSCHYCRVRCCARCGGKVTLRSNKVIWVCILCRKKQELLSKTGQWIHKSTGPDSMLWRMESELRGLLPQDDASHDKRQKLERAHSAAEKENQPLQRSGSALRRQYSQQEQRCYGELEGLARTHPHLVHSRQKAAYGVVDTMISAPLPAQLLPHGPAGNSMPLPPRSSSSDDEVPECISDENDEYRDRGPSRDRSSSDSSRSQRQAILNEKMNKFLSFPPSWQASTDGSRVIGHMVLRKSVVEGSSHSSAAILGLKVVGGKLLPDGIRGAIIEKVKKGSIADLEGQLRIGDEVLQWNGVPLQGRSAEEVAAVVADSKHDTHVELVVSRSLPVTRPGAQPWRSHKEVYTETMMVGGCEKPSVLVTSPGSPDVHSRRRSNRHSHHNANVAGRIQLKIYFDISALQLLVTVVSASGLTPRADGSPRCPYAKIFLLPDKSEKSKRRTKTLANTLEPRWNQTFVYCGIRITDIKKRTLEVTVWDLNRYGPNDFLGEVLLDLDNIMMNHEPNWYTLKPHEDSSSFYRYREEEADGDHLSPPSTSTSRLSDSDTPSECDLRRHHSLSSLASSSSPPPPHDRMDMEEVKLSNCTYFTVNDDRGGDGSRLPTHAYAPRFQSRSATATPTTSPKKRQLPQIPHQVRD

Summary

Uniprot
A0A1B6CKH8   A0A1B6CLW7   A0A158NQ35   A0A0A9W622   A0A0A9W1H3   A0A0A9W627   + More
A0A0A9VYQ8   A0A0A9VXC8   A0A0A9Y4V6   A0A0A9VVP8   A0A0A9VXD4  
Pubmed
21347285    25401762   
EMBL
GEDC01023410    JAS13888.1    GEDC01022876    JAS14422.1    ADTU01001673    ADTU01001674    + More
ADTU01001675    ADTU01001676    ADTU01001677    ADTU01001678    GBHO01043294    JAG00310.1    GBHO01043291    JAG00313.1    GBHO01043289    JAG00315.1    GBHO01043293    JAG00311.1    GBHO01043295    JAG00309.1    GBHO01017481    JAG26123.1    GBHO01043292    JAG00312.1    GBHO01043290    JAG00314.1   
Proteomes
UP000005205   
Pfam
PF02318   FYVE_2        + More
PF17820   PDZ_6
PF00168   C2
Interpro
IPR001478   PDZ        + More
IPR039032   Rim-like       
IPR041282   FYVE_2       
IPR011011   Znf_FYVE_PHD       
IPR017455   Znf_FYVE-rel       
IPR035892   C2_domain_sf       
IPR013083   Znf_RING/FYVE/PHD       
IPR041489   PDZ_6       
IPR036034   PDZ_sf       
IPR010911   Rab_BD       
IPR000008   C2_dom       
SUPFAM
SSF50156   SSF50156        + More
SSF57903   SSF57903       
Gene 3D
2.60.40.150     3.30.40.10    
ProteinModelPortal
A0A1B6CKH8   A0A1B6CLW7   A0A158NQ35   A0A0A9W622   A0A0A9W1H3   A0A0A9W627   + More
A0A0A9VYQ8   A0A0A9VXC8   A0A0A9Y4V6   A0A0A9VVP8   A0A0A9VXD4  
PDB
4TS6     E-value=9.86873e-38,     Score=396

Ontologies

KEGG
101745430    K15297 regulating synaptic membrane exocytosis protein 2 | (RefSeq) regulating synaptic membrane exo
GO
GO:0017137   GO:0006886   GO:0006887   GO:0005623   GO:0016021   GO:0046872   GO:0016020   GO:0005515   GO:0016813   GO:0016817   GO:0008270   GO:0043565   GO:0016876   GO:0043039  
PANTHER
PTHR12157  

Topology

Length:
793
Number of predicted TMHs:
0
Exp number of AAs in TMHs:
0.01448
Exp number, first 60 AAs:
0.00177
Total prob of N-in:
0.00033
outside
1  -  793
 
 

Population Genetic Test Statistics

Pi
292.624761
Theta
201.049772
Tajima's D
0.617671
CLR
0.472535
CSRT
0.543522823858807
Interpretation
Uncertain
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