SGID Silkworm Genome Informatics Database
Gene
KWMTBOMO08924
Pre Gene Modal
BGIBMGA007812
Annotation
PREDICTED:_regulating_synaptic_membrane_exocytosis_protein_2_isoform_X5_[Bombyx_mori]
Location in the cell
Nuclear   Reliability : 3.717
 

Sequence

CDS
ATGCCGGTATCATCTCGAACAATTCCTCAGAGCACTCCGGTACAAAATACAGAGGGAACCGAAGTCCCTCCGCAGACCCAGAGGTTTCAAACGATCCGTAAGAATGGGATTATCGACAATCCGAACGGCCCTCCTCTGTATGGAGTCAAATGGAAGAAGCTCGTATTTGGAAGCCCCGGCCCAGAGATGGGAGCAGTACTCCACGCGAGGCCGGACTTGTGCTTTATAAAGCAAAAGTCTTTGTTCAGGCGTGAAGTACCGCTTCGCTCTGTTGAGGACTCCCAGCATTTTGGACGCCAACTTGGCTTTGCCTTCCAAATGACTCAGAAACTGGACATCGCTCGAAATGTCGACCCCAAGTATCCCGATACTCTCGGAAGGTTGCAGGGATACTTCTTGGAATTGCGGCGCCATGACAAAGGGGTCCTTCTTCGCAGATGGGAGCGACATTATGCGGGTTTATCTGATTCGGAGCTTGCTGCCCGCAGTGGCGGTAGTTGGGCTCCACGGAGAAGGCTATCTCCTGATGCAACAGCAGCAGATTCCGACCTAGAATCGGTCGCTTCTGTAACATCAAGCGCCTTCAGCACACAATCCGAACGACCTCGACCGACACGTATGCTTAGCAACGATTATGGTGGAAGGGACAACGGAAGGAACAATAATCAGCCACAGCCGTTGGAGAGACGCGAGTCTCGCCGAGGCCAATTCACTCGGAGTTTGAGCAACGCAGATGTGCCGCCTGATGAAAAAACAGATGGCAGTCTAAGTGACACTGCGTTGGGTGGTACCGGCGAGCTGGAGCCAAGCACTGATGATGTCCTCTTAAAAGCTGAGCCTCGGGATTATTTCGGGCCGGGCATGGGCAAGAAAAGCAACTCTACCTCACAATTGTCAGCCACAGGACGAAAACGAAGGTTAGGTTTTGGTAAACGTGGCAAAAATTCGTTTACGGTGCAACGCAGTGAGGAAGTGGTACCCGGCGAAATGAGAGGAGGCACCGGCGTGTCGCGGGCCTCCTCCGCATCCAGTGAGAACGACGAAGACAGGTGGTCCCCGGGCATGCGAGGTTCTGGTTCTTCAGAAGGCGGAGGGCTATCGGACTTCATTGACGGCCTGGGTCCCGGACAGCTGGTCGGGAGACAATTACTAGGGGCGACTACGCTTGGAGATGTCCAACTTTCAATGTGCTACCAAAAAGGATTCTTAGAGGTGGAAGTCATACGTGCTCGCGGCTTACAAGCCAGGCAAGGAAGCCGAACCCTTCCAGCGCCATACGTCAAGGTCTATCTCGTGAGCGGAAAGCGATGTATAGCCAAAGCAAAGACAACAACCGCACGACGTACGCTCGACCCTCTCTACCAGCAAACGCTAACGTTTCGAGAAAACTTCAAAGGATGTGTACTGCAGGTTACTGTTTGGGGTGACTACGGTCGCATCGAGGGGAAAAAAGTATTTATGGGCGTGGCCCAAATAATGCTGGACGACATAAACCTCTCTAATATCGTTATTGGATGGTACAAACTATTTGGAACTACTTCTTTGTAA
Protein
MPVSSRTIPQSTPVQNTEGTEVPPQTQRFQTIRKNGIIDNPNGPPLYGVKWKKLVFGSPGPEMGAVLHARPDLCFIKQKSLFRREVPLRSVEDSQHFGRQLGFAFQMTQKLDIARNVDPKYPDTLGRLQGYFLELRRHDKGVLLRRWERHYAGLSDSELAARSGGSWAPRRRLSPDATAADSDLESVASVTSSAFSTQSERPRPTRMLSNDYGGRDNGRNNNQPQPLERRESRRGQFTRSLSNADVPPDEKTDGSLSDTALGGTGELEPSTDDVLLKAEPRDYFGPGMGKKSNSTSQLSATGRKRRLGFGKRGKNSFTVQRSEEVVPGEMRGGTGVSRASSASSENDEDRWSPGMRGSGSSEGGGLSDFIDGLGPGQLVGRQLLGATTLGDVQLSMCYQKGFLEVEVIRARGLQARQGSRTLPAPYVKVYLVSGKRCIAKAKTTTARRTLDPLYQQTLTFRENFKGCVLQVTVWGDYGRIEGKKVFMGVAQIMLDDINLSNIVIGWYKLFGTTSL

Summary

Pfam
PF17820   PDZ_6        + More
PF00168   C2
PF02318   FYVE_2
Interpro
IPR039032   Rim-like        + More
IPR041282   FYVE_2       
IPR000008   C2_dom       
IPR041489   PDZ_6       
IPR010911   Rab_BD       
IPR001478   PDZ       
IPR036034   PDZ_sf       
IPR035892   C2_domain_sf       
IPR017455   Znf_FYVE-rel       
IPR013083   Znf_RING/FYVE/PHD       
IPR011011   Znf_FYVE_PHD       
SUPFAM
SSF57903   SSF57903        + More
SSF50156   SSF50156       
Gene 3D
PDB
2Q3X     E-value=4.82466e-36,     Score=380

Ontologies

Topology

Length:
515
Number of predicted TMHs:
0
Exp number of AAs in TMHs:
0.16446
Exp number, first 60 AAs:
7e-05
Total prob of N-in:
0.00186
outside
1  -  515
 
 

Population Genetic Test Statistics

Pi
254.356122
Theta
212.367965
Tajima's D
0.584529
CLR
0.048505
CSRT
0.542822858857057
Interpretation
Uncertain
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