Silkworm Genome Informatics Database

Gene

KWMTBOMO08923 Validated by peptides from experiments

Pre Gene Modal

BGIBMGA007719

Annotation

PREDICTED:_host_cell_factor-like_[Papilio_xuthus]

Location

Bomo_Chr15(+):8249464-8260712 View in EpiBrowser

Location in the cell

Nuclear Reliability : 2.674

CDS

ATGGAATCGGACCCTGCTACTCACAGCGATTCTCACGATGGCGCGGAAGTGTCGCCTCAAGCCGATAACCAGGATAACCAGGTTGCCGATACTATCGATGATTTGCCTGACAATAATTCAGCAAGTGACGATGTGACCACTGAGCCTGAGGAACTTGCTGCGAATGGTGGTCCAACTAGCAGCAGCGATGTTTTGGACGTAGAGCCTTCTATTGCACCTCCTGCTCAGGAAGAGCATCCTGTAGTTGAACAAGGTAATGCAGATGCTGAAGATGAAATGGACATAGATGAAACTGCTTCAGGTGCTATGAACGAGGAATCAGCGTATATCGGAGATAATTGTCTTTCTACACCTGCAGATACTGAAGAGAATTCGCCCCAAAATGATCAAGACAATCAACTAGATTCTATGATAAAGGAGCCAGAGTCAGAAGAAGCAGAGGGTCTAGGTGATGCTGAAGAGTCTCCTGATCAGTCTATCAGTTCTGCCATTCTACCAACAGATAGTGGTGTAGGTGAAGTTGAAGGAGCACCAAGCGTTCAAGATGATGAATCAAGTACAATGGATGAAGATATAGCTGAAGGAGGGGTTGCCAGCAGTGATGATGTCAACGACATTAGTAGTGCCGCACAGGAGATACTCAGCACTGGAATAAGCTCGAGCACTGCAGAACCTGGATCAGACATTTCAAGCAGCGGCCAAACAGAGCCGTCATTAATATCATCCACAGCCAATGGTCCAGGCATAGTACATTCGTTTTCGCTCACTCCTCAACAGCAGACCACAAACGAGTTCGGCGACGCTGATACCTCGGAGATGGAAGGCGCCGCCGACACGGCACCCGCGGGCAGTGAGTCGTCCATGCCGCTTCTCACCATGACGGCCAACGGATCCGCCGCACTCATCTCGCCGACCTCGACGCCGACGTCTACTCCGATCCAAGGCGAGGAGGGCGGGGCGACGTCGGTGTCGTCATCGGTTGGTGCGGCATGTGCGGCGGATGCGGCAAGTGATGTCGGCGCGGCGTCCGCTGCGAGCGGCGAGGCGGAAGGAGCGGTGAGCAGCACCCTCCCCTCCACCATCGCTGCGCACGCTCTTGCCACACTCGCCAGTGCTGCTCTTCACCATCACGAACAGGCCGAACCAGAAGAGCCCAAGAAACACGACGAGGACGCTTGGTACACGGTTGGCATCGTCAAAGGAACTACGTTTACGGTTCAAAATTATATATCGGATCCAAACATAGACTTGTCTAATTTATCTTTAGACAGTCTTCCCGATTTGACCGGGCTGCCGACGACGCCCTTAGAGCATGGCACAGCCTATAAGTTCAGAATTGCTGCTGTGAATTCTTGCGGCCGAGGAGAGTTCAGTGAAGAATCTGCATTCAAAACCTGTCTGCCGGGATTCCCCGGTGCGCCGTCAGCTATCAAAATATCAAAATCAGTAGAGGGCGCACATTTGTCCTGGGAACCACCGCAAGTTGCCGCCGAAGGAATTTTCGAATATTCGGTCTACCTGGCGGTGCGCTCCAACACTCAGCCTAAGGAAGCGGCGAAGTCGCAGCTGGCGTTCGTGCGCGTGTACTGTGGCAAGGCGAACACGTGCGTGGTGCCGCAGTCGTCGCTGAGTGCGGCGCACGTGGACTCCTCCACCAAGCCCGCCATCATCTTCCGCATCGCCGCGCGCAACGAGAAGGGCTACGGCCCCGCCACGCAAGTCAGGTGGCTGCAAGATATTAAATCCACTGGTGTGAAAAGAGCAGGAGAGGGAAGGTTACCGGGAGCGTCCCCATCAAAGCAACCTAAACAAATAGTACATTAA

Protein

MESDPATHSDSHDGAEVSPQADNQDNQVADTIDDLPDNNSASDDVTTEPEELAANGGPTSSSDVLDVEPSIAPPAQEEHPVVEQGNADAEDEMDIDETASGAMNEESAYIGDNCLSTPADTEENSPQNDQDNQLDSMIKEPESEEAEGLGDAEESPDQSISSAILPTDSGVGEVEGAPSVQDDESSTMDEDIAEGGVASSDDVNDISSAAQEILSTGISSSTAEPGSDISSSGQTEPSLISSTANGPGIVHSFSLTPQQQTTNEFGDADTSEMEGAADTAPAGSESSMPLLTMTANGSAALISPTSTPTSTPIQGEEGGATSVSSSVGAACAADAASDVGAASAASGEAEGAVSSTLPSTIAAHALATLASAALHHHEQAEPEEPKKHDEDAWYTVGIVKGTTFTVQNYISDPNIDLSNLSLDSLPDLTGLPTTPLEHGTAYKFRIAAVNSCGRGEFSEESAFKTCLPGFPGAPSAIKISKSVEGAHLSWEPPQVAAEGIFEYSVYLAVRSNTQPKEAAKSQLAFVRVYCGKANTCVVPQSSLSAAHVDSSTKPAIIFRIAARNEKGYGPATQVRWLQDIKSTGVKRAGEGRLPGASPSKQPKQIVH

Uniprot

H9JDX2

Pubmed

19121390

EMBL

BABH01002643 BABH01002644

Proteomes

UP000005204

PRIDE

H9JDX2

Interpro

IPR036116   FN3_sf        + More
IPR003961   FN3_dom
IPR013783   Ig-like_fold

SUPFAM

SSF49265 SSF49265

Gene 3D

2.60.40.10

CDD

cd00063 FN3

ProteinModelPortal

H9JDX2

PDB

4GO6 E-value=1.39245e-51, Score=515

KEGG

101738049 K14966 host cell factor | (RefSeq) host cell factor-like

GO

GO:0048188 GO:0071339 GO:0005515 GO:0007264 GO:0008270 GO:0016813 GO:0016020 GO:0016817 GO:0043565 GO:0016876 GO:0043039

Length:

607

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.00035

Exp number, first 60 AAs:

0

Total prob of N-in:

0.00053

outside

1 - 607

Pi

208.154762

Theta

166.864556

Tajima's D

0.692713

CLR

0.147233

CSRT

0.566671666416679

Interpretation

Uncertain

Source	Sequence	Identity	Evalue
26822097	GEFSEESAFK	96.30	1e-11
26280517	ANPVTEEVVNPSEDQPKK	96.30	1e-11
28556443	LMDLFK	100.00	0.007

Sequence

Summary

Ontologies

Topology

Population Genetic Test Statistics