Gene

KWMTBOMO08921

Pre Gene Modal

BGIBMGA007814

Annotation

PREDICTED:_rab-like_protein_6_isoform_X2_[Bombyx_mori]

Location

Bomo_Chr15(-):8239281-8244533      View in EpiBrowser

Location in the cell

Nuclear   Reliability : 4.636

CDS

ATGTTTTCTGCTTTGAAAAAGTTAGCTAGAAGCAGTGATGATCGGTGCCCTCCTCCAATGCCAATGTCTTCCTCGTTGCAGAAAAAGTTTTCTAGAGGAGTGCATTTTAATATGAAAATATTGATCAAAGGAGATAGAAATGTAGGTAAATCGTGCCTTCTTCAACGTCTTCAAGGCGGTCCATTTATCGAAGACTATGTTCCAACAGATCAAATACAAGTGGCTCCAATACACTGGACTTATAAAAACAGCGATTATATAGTGAAGGTAGAAGTTTGGGAGGTTGTGGATAAAGGACGTACAAAAAAGAAAACCCCAATAGGACTGAAGTTAGAAAATCAATCAGCCCCATCATTAGAGGACAATCTCGATGCTCCTGTACTAGATGCAACCTTTTTGGATGTCTACAAAAATACCACTGGTGTTATACTTATGCTTGATATAACTAAGCCTTGGACATTTGAATATGTTGTGAAAGAACTATCACAAGTACCTGCAGATTTGCCAGTTGTTATCTTAGGAAACCATTGTGATATGCAGCACCATCGCCAAGTGCATTCCCACCATATTGAACAGGCTTTACATAATGCAAAGCAAATTAGAACAGCTCCAGTTCGTTATGCAGAATCGTCCATGAGAAATGGCTTTGGATTGCGTTTATTACATAAGTTTCTGAGTATACCATTTTTGCGCCTTCAAAAGACAAGTTTGTTAGAGCAACTACAGAGAAATCAAAGAGATATGGAAGAAATAGAGCAGGAATTAGATGAATATCAGAATTCAGAAGAATCACAGTACAACACATTCCTAGATCGTTTAACAAATAAAAGGAAACAGAACACTAATCAAGTTGAACCTCGACCAAGCAATGAACGCTCTCCTAGCATTGTACTAGGTGGTGGGAAACCCATAGTGCCACCCAGTGTAAATCCATTACTGGCCCAATCTCTAAATCCATCAATGAAAGCACAAATACCAGAAGCTAAGCAAACTCAATTTGTTCATCCTGATCTTATAAAACCTAAGCAAACTGTAAACATGGACACGACGCCGCCACGCCTCCTCCAACACGATAGTAATCAAAGCACACCTTCAGTCACAAATGCGGGTAGTTCTGTTGGAACTCTAGACGAATTTTATGCTGGTGCACTAGATAGTAGCTTCTTGGAGGATCTAACACCTTTGTCTAGTAGTAGACAGGAGATACAATTTGAATCGGAAAGTGATGATGACACTACAAATCCAAAAGTTACAGTAGATGAAGATGATCTTGATATCGATACTTTTTCGACTGAATTGACACAAAAAACAAAGCTGCAACAAAAAGACCAGCTAGTGGAAACAGATTTACATAAAACGATTGAAAGAAATACAAGCCAAAAGCGAGAGAGTGAAACGGAATTTGAAAAGACATCAAATCCAGATATAAATTTACCTATATTTGAAAATAGACATAACATCCAATTGTCTTTGGATAATGACTTCCCTCTATGGAGTGGTGACTCTAGCGTTAGAAGATCACCTGAAGGTGGCGAAGATCCTGATGCCCTTAAAGATCCTGGTGATAAGTCTGAAAAAAAACACCACAAGAAGAAAAAGTCCAAAGATAAAGACCGCGGCGACTACAGTGAGATATCAGAACGCAAAGAGAAGAAACAAAAACGTAAGAAGTCTAAAAGTGAAAAAAAACCCAATCCTCAGCAGGACTTGTTAGCGCCTTCAGGATCTGTAGACTTTGACTATGCAGAATATGATAGCATTTAA

Protein

MFSALKKLARSSDDRCPPPMPMSSSLQKKFSRGVHFNMKILIKGDRNVGKSCLLQRLQGGPFIEDYVPTDQIQVAPIHWTYKNSDYIVKVEVWEVVDKGRTKKKTPIGLKLENQSAPSLEDNLDAPVLDATFLDVYKNTTGVILMLDITKPWTFEYVVKELSQVPADLPVVILGNHCDMQHHRQVHSHHIEQALHNAKQIRTAPVRYAESSMRNGFGLRLLHKFLSIPFLRLQKTSLLEQLQRNQRDMEEIEQELDEYQNSEESQYNTFLDRLTNKRKQNTNQVEPRPSNERSPSIVLGGGKPIVPPSVNPLLAQSLNPSMKAQIPEAKQTQFVHPDLIKPKQTVNMDTTPPRLLQHDSNQSTPSVTNAGSSVGTLDEFYAGALDSSFLEDLTPLSSSRQEIQFESESDDDTTNPKVTVDEDDLDIDTFSTELTQKTKLQQKDQLVETDLHKTIERNTSQKRESETEFEKTSNPDINLPIFENRHNIQLSLDNDFPLWSGDSSVRRSPEGGEDPDALKDPGDKSEKKHHKKKKSKDKDRGDYSEISERKEKKQKRKKSKSEKKPNPQQDLLAPSGSVDFDYAEYDSI

Uniprot

H9JE67   A0A1E1WF33   A0A194PIY0   A0A0N1PJA1   A0A2H1VLI4   A0A3S2P245   + More
A0A0L7L6X4   A0A212EWS9   U5EVA4   A0A1W4XIH6   A0A1S4G7J3   B0WEP3   D7EI68   A0A1Q3FXS6   A0A2A3EFL4   A0A336KN38   A0A088A5F6   A0A182JTI7   A0A154PE97   A0A1Y1MJX3   A0A182S612   A0A182QYT9   A0A0L7R5C3   A0A182Y1M7   A0A182RKT4   A0A182WG53   A0A0N0BJG7   A0A182TIF1   A0A232EV50   A0A182HQ82   A0A182UPY2   A0A182MYQ2   A0A182KSG3   A0A1S4HF81   V5I937   A0A182WZN6   A0A182P6J9   N6TWW8   A0A1B6CF37   A0A1L8DLN8   A0A2R5LBX7   A0A182MKJ9   A0A084VI87   E0VGD9   T1K7M9   E2AA22   A0A182H3G5   A0A1B0D020   A0A182FTU3   A0A2M4BHH7   A0A0C9S2Q0   F4WND2   A0A151XAN4   W5JM37   A0A2S2PV14   A0A158NG81   A0A195B7Y2   A0A195FF72   A0A151J5C5   A0A0V0G5B7   A0A1B6MKQ6   A0A0J7KX05   A0A195CK01   E2BXL8   A0A1L8F5Q8   A0A026W380   A0A1L8F0V6   A0A0P4VVJ9   A0A224XNA6   A0A069DZ75   A0A3L8DMG8  

Pubmed

19121390    26354079    26227816    22118469    18362917    19820115    + More
28004739    25244985    28648823    20966253    12364791    23537049    24438588    20566863    20798317    26483478    21719571    20920257    23761445    21347285    27762356    24508170    27129103    26334808    30249741   

EMBL

BABH01002645    GDQN01005454    JAT85600.1    KQ459602    KPI93277.1    KQ459937    + More
KPJ19230.1    ODYU01003218    SOQ41671.1    RSAL01000049    RVE50401.1    JTDY01002537    KOB71223.1    AGBW02011886    OWR45968.1    GANO01001945    JAB57926.1    DS231910    EDS45759.1    DS497673    EFA13241.1    GFDL01002752    JAV32293.1    KZ288256    PBC30545.1    UFQS01000691    UFQT01000691    SSX06246.1    SSX26600.1    KQ434874    KZC09744.1    GEZM01029626    JAV86033.1    AXCN02001032    KQ414654    KOC65961.1    KQ435715    KOX79088.1    NNAY01002053    OXU22229.1    APCN01003297    AAAB01008986    GALX01003615    JAB64851.1    APGK01048477    KB741112    ENN73795.1    GEDC01025285    JAS12013.1    GFDF01006708    JAV07376.1    GGLE01002915    MBY07041.1    AXCM01007497    ATLV01013330    KE524853    KFB37681.1    DS235138    EEB12445.1    CAEY01001807    GL438001    EFN69721.1    JXUM01107438    KQ565141    KXJ71290.1    AJVK01021173    GGFJ01003333    MBW52474.1    GBYB01012299    GBYB01015181    JAG82066.1    JAG84948.1    GL888236    EGI64302.1    KQ982339    KYQ57389.1    ADMH02000662    ETN65412.1    GGMR01020077    MBY32696.1    ADTU01015041    KQ976574    KYM80352.1    KQ981625    KYN39011.1    KQ980017    KYN18234.1    GECL01002857    JAP03267.1    GEBQ01003483    JAT36494.1    LBMM01002422    KMQ94846.1    KQ977721    KYN00399.1    GL451276    EFN79562.1    CM004480    OCT66919.1    KK107487    EZA50041.1    CM004481    OCT65208.1    GDKW01000519    JAI56076.1    GFTR01006957    JAW09469.1    GBGD01001130    JAC87759.1    QOIP01000006    RLU21119.1   

Proteomes

UP000005204    UP000053268    UP000053240    UP000283053    UP000037510    UP000007151    + More
UP000192223    UP000002320    UP000007266    UP000242457    UP000005203    UP000075881    UP000076502    UP000075901    UP000075886    UP000053825    UP000076408    UP000075900    UP000075920    UP000053105    UP000075902    UP000215335    UP000075840    UP000075903    UP000075884    UP000075882    UP000076407    UP000075885    UP000019118    UP000075883    UP000030765    UP000009046    UP000015104    UP000000311    UP000069940    UP000249989    UP000092462    UP000069272    UP000007755    UP000075809    UP000000673    UP000005205    UP000078540    UP000078541    UP000078492    UP000036403    UP000078542    UP000008237    UP000186698    UP000053097    UP000279307   

PRIDE

H9JE67   

Pfam

PF00071   Ras        + More
PF00400   WD40
PF02077   SURF4

Interpro

IPR040385   RABL6        + More
IPR027417   P-loop_NTPase       
IPR001806   Small_GTPase       
IPR017986   WD40_repeat_dom       
IPR036322   WD40_repeat_dom_sf       
IPR015943   WD40/YVTN_repeat-like_dom_sf       
IPR001680   WD40_repeat       
IPR002995   Surf4       
IPR011990   TPR-like_helical_dom_sf       

SUPFAM

SSF52540   SSF52540        + More
SSF50978   SSF50978       

Gene 3D

2.130.10.10     1.25.40.10    

ProteinModelPortal

H9JE67   A0A1E1WF33   A0A194PIY0   A0A0N1PJA1   A0A2H1VLI4   A0A3S2P245   + More
A0A0L7L6X4   A0A212EWS9   U5EVA4   A0A1W4XIH6   A0A1S4G7J3   B0WEP3   D7EI68   A0A1Q3FXS6   A0A2A3EFL4   A0A336KN38   A0A088A5F6   A0A182JTI7   A0A154PE97   A0A1Y1MJX3   A0A182S612   A0A182QYT9   A0A0L7R5C3   A0A182Y1M7   A0A182RKT4   A0A182WG53   A0A0N0BJG7   A0A182TIF1   A0A232EV50   A0A182HQ82   A0A182UPY2   A0A182MYQ2   A0A182KSG3   A0A1S4HF81   V5I937   A0A182WZN6   A0A182P6J9   N6TWW8   A0A1B6CF37   A0A1L8DLN8   A0A2R5LBX7   A0A182MKJ9   A0A084VI87   E0VGD9   T1K7M9   E2AA22   A0A182H3G5   A0A1B0D020   A0A182FTU3   A0A2M4BHH7   A0A0C9S2Q0   F4WND2   A0A151XAN4   W5JM37   A0A2S2PV14   A0A158NG81   A0A195B7Y2   A0A195FF72   A0A151J5C5   A0A0V0G5B7   A0A1B6MKQ6   A0A0J7KX05   A0A195CK01   E2BXL8   A0A1L8F5Q8   A0A026W380   A0A1L8F0V6   A0A0P4VVJ9   A0A224XNA6   A0A069DZ75   A0A3L8DMG8  

PDB

6O62     E-value=1.59977e-05,     Score=117

KEGG

101738487    no KO assigned | (RefSeq) rab-like protein 6

GO

GO:0005525   GO:0003924   GO:0016021   GO:0007264   GO:0008270   GO:0016813   GO:0016020   GO:0016817   GO:0043565   GO:0016876   GO:0043039  

PANTHER

PTHR14932  

Length:

587

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.00142

Exp number, first 60 AAs:

0

Total prob of N-in:

0.00074

outside

1  -  587

 

 

Pi

201.702578

Theta

190.168157

Tajima's D

0.34859

CLR

0.048964

CSRT

0.467276636168192

Interpretation

Uncertain