SGID Silkworm Genome Informatics Database
Gene
KWMTBOMO08920
Pre Gene Modal
BGIBMGA007718
Annotation
PREDICTED:_uncharacterized_protein_LOC101745573_isoform_X2_[Bombyx_mori]
Location
Bomo_Chr15(+):8219524-8234145      View in EpiBrowser
Location in the cell
Nuclear   Reliability : 4.364
 

Sequence

CDS
ATGTCTGGTCGGTCAAGCCCCGTGAATGGCGGCTACGAGTCCGCAAGGCTCACCGTCCGTAAAGATCTGTTCCCTGATGTGAGGGTTCCAAAACTAGGAGCTTCTTCCAAGGACGATTTAGACGAAATAGAAACTGATGAATCAGCGTCTGGCGTGAAGCTTGAGACTGATTTCGAGCAAAGCATTGACGAAATTGCCAATAAAAAGGTTCAGGCCAATGGGGTCCAGCCGCCTCCTAGAACCCGCCATAAGAAACACAAGCAGCGTTCCCGGCGAGATACTAAACATCTTAATGGGTATCTACCCACAGAAAGTAAACGTAAAAAACACCGACATAGAACTCGTTCAATGAACAATACAGTGCAAATTATTAGTGGAAAAAACTTAAGCTTAGTGAGTAGTAGTAAGTATCGGGATTATGATGAAGAAATGCAAGATGCAGAGGAAGAACAACGAGTTGAGGAGGAGGAGGAAGATGTGGAGGAAGTGCCTGAACAAGAAGAAAGTTCAGACGATGAAGTGCTCAAGTGCAGTGTTAAGTTACCATCAGTAATATGTATGCAGCGTCAAAGTGGCAAACCATATAGTCATGAACTTAGTCAATTATCTACCAAGAAGAGTAAAAAAGATTCGAAAGAAAGAAGAACTCATGCAATCACACCTTGTAGTGGCAAACCCCGCTCAATGTTAAATATTTGTTCACGCAGTAAAAAGAAAGCAAGGAAGACAGAGTCAACTACCACTTATCAAAGCCAAATTATAGATACAAATTCTATTAAAATTAAAATACGAAGAACAAGTTTACATGAACCTAAAATTACACCAGTTCCTGTCCCGGTCTTAGACGTTAGCCAGAGAAAGTCTAAAAAGAGGCGAACTATTTCACCGGTTGCCAGTGAGAGCTCCGGTGAAGAATACGACCCTTCACGCGGTGATACCGCAGCAGCCATGAGTGTCGCCGCACCGAAACCCCGGCATCCACGTCCTAAAACTCCCAAGACTCGTAAATCTAACACCAATAAAAAAAAAAAAGAAAAGACTGAAAGAAATAGAATAAGTGCGGTGCAAAATAAAGACACAGGACCACAAAGTCCATGGGGAATGTCAATGCCTCGTGAAGTGCTGTTGAAGATATTTGATTATGTGATCTCTTCACTCGGCACGTTACCATCTGTAATAAGATTAGGTAGAGTTTGTAAATTATGGCACAGCGTTAGTTGCACACCAGATCTGTGGAAGAGCGTTGATCTTGCGCAATACACGATCGAGAAATGTAAAACAGATTACAAACTGGTCTGGCTCCTCGAAAATCGTTTATCTCAATGTCAAAGCTTAAATATTGCTCAATGGAAGGTCTGCAACATAGGCTGGGTGTTGACGAGCGTGGCGGAATGCTGCCCGAACCTGACCGAGCTCAGCGTGGCAGGCTGGAGTCGAATAACAGCTGAACAACTGTACGAAATACTTAGATCCTTACCAAATTTACAAAGATTGGATCTATCATTTGCGTCCGAAACCGGCGGCTCGGGTTCGTGTCTCACGGCGGCTTCGATGGCACGTGTGTGTGAAAACTTCGGCGAGCGACTCACGCATCTCACTCTGGCGAACAACAAGTTCACAGCCTTGTCTCAGATACTTTCCTCTGTTGCGGCGCACTGTAAGAATCTGGAAGTGTTGGACATATCCGGAGCTCAGGCCACGACGCACCCGGCGGCCGTGCCCCTCGAAGCCCTGCAGAAGGGCTGCCCAAAGATGAGAGTCTTCAGAGCGGCCAACGCGCAACTGATTTTGGCGTCCGCGACAACGTCACAACAGATGGAGACGAACGGCTGGACGCAGCTGGAGGAGCTGTCGGTGGCGGGCGAGGCGGCGGCGGAGCGCGTGGCGGTGGGCGAGTACCGGCTGGGGGACGACGCGCTGAGCCGGCTGGTGCGCGGCGCCACGCGGCTGCGGCTGCTGGACCTGCGCGGCCTGCAGCGACTGTCCGACTCCGGCCTCGTGCGCGTGCCGGCCTGGGACCTGCAGCATCTCTTCCTTGGAGGCTGTAACGTGACGAGGCAAAGCAACGCGTGTCTGGAGTTGATCTGCGAGAAGTGGTCGCACAGCCTGCTGGAGCTGGACCTGTCGTGGGCGTCGGCGGCGCGGGTGCTGGACGACGCCGTCTCCGCGCTCGCTGATTCCACCACCAGCAAACTGAGAATACTAAATCTGTGCGGTTCTTCTGTCTCATTGGAACCGGTGAAGAAAGTTCTGCTCAGGTGTCCGCACTTAGAATACTTGAACCTCAGTTCCTGTCGAGCCTTACCTAGGGGGATGAAACGGTCGTATGCGGGAAAAGAACTGCAAGATCTCAAAGATAGCTTCGATCCCGTCAAAATAAAAGCGAAAGAAGAGAAAGACGTTGAAACCACGACACCAAAAAAAGGAACAAAAAAGACTCAACCAGATTCAAAGTCTGATACTGATGCGAAGGAAACAAGCGGTGATCTCACATCTGCCTCTGATACTAAGATTGATTCAAATTCTCTAAATGAAAGCGAAAGTAAATCTTTCCATTTCCAAGAACCCAAAAGTCTCTCCGACGTCGGCTTAAGTGAAAAACTTTCTTCATCCCTAGAATTCATTTCTAAATCTTCTATTGATGGTAAAACCATAAATAGTAAGACGAGTGATTTATTCACAAGCAAAGACAGTATTGATTCTGCCACTTCCGTCCTAGAGGAAAGGAGGTTCACCAGAGACGTTACTCCGAAACTTTTGAGTCCAATGTCGCAGTCTAGGCCCGATTCCTCGTCCACGCCGAGGTCAGAATCGAAATCAGATTTTGGTAGTCCCCACTTTAGTCCCGTGCCAAAACCGGACAGTCAAGTTCAGAACAGCCCCGATGTACAGACAGAGACAATAAAGAACAATTCGTGGCATTTGGGCACTTTCAAATCAACTCCCACCTACAAGTCGGAAGCGAGTCCTCTCAATAGAATAGATAGCAGTAGTAAAATGAAGCACAACAAAATGATAGAACAGTGCAGTCCCACCACGTCCCTCGAGAACACAAACAAACGCAGTCCTGATGTACAGGGTGTTAAACAGGACATAAAGAATCCCAACACTTGGAACTACGGGAATTATAGTCCTATGCCCAGACAAGACAATCAGTTTTCCTCTCAAAGAAGTCCATACTCTGCTCAACCGAGTCCAGCCCAGCCTAGTCCGTATTCAACTCAACCGAGTCCCTACTCAGCACAACCCAGCCCGTACTCGTCGCAACCTAGTCCGTACTCAGCACAGCCCAGTCCCGACACTAGTCAAATAGTCAAGCCAGATCTGCCCAAGTCGGGAGCTTGGAACACGGGCAACTACAGCCCAATGCCCAAACATCATGCACCGTTTTCTCCTCATCCGTCGACCCACACCAGTCCGGATCCAGGCATAGATAACAGCTGGGGAATTGAAAAGTTTAATCAGACAGCCGTCACTCCCACTTCAACGATAGAATCTTTAGTGTGGGGTACGCCTTCGTTCAATGCAGAGCCGCCGTCGACCGTGTCCGGTCGCAGCGAGAACGTTCCCTCCGCGCCGACATTGAACACGCCGCCGCCGCGGACTTGGACCGAGTTGCCTTCGTTTGAATCTAGTGTTCGAAGACTGAACGACAATTTAAGTGATCCGTGGAGTGTGGGACAATTCCGCGTCGAGCCCCCGCACGCCGTGCACAATCATTTTGTTGAGCAAAACGTTAATTTTGATTCGTTGAGTTCTCATCATCTGGGACATCAGACGCAATCGCTATCAAACTTCTTGGACGACGGTTTCTCGGAAACGTCGCGCGTCGACTGA
Protein
MSGRSSPVNGGYESARLTVRKDLFPDVRVPKLGASSKDDLDEIETDESASGVKLETDFEQSIDEIANKKVQANGVQPPPRTRHKKHKQRSRRDTKHLNGYLPTESKRKKHRHRTRSMNNTVQIISGKNLSLVSSSKYRDYDEEMQDAEEEQRVEEEEEDVEEVPEQEESSDDEVLKCSVKLPSVICMQRQSGKPYSHELSQLSTKKSKKDSKERRTHAITPCSGKPRSMLNICSRSKKKARKTESTTTYQSQIIDTNSIKIKIRRTSLHEPKITPVPVPVLDVSQRKSKKRRTISPVASESSGEEYDPSRGDTAAAMSVAAPKPRHPRPKTPKTRKSNTNKKKKEKTERNRISAVQNKDTGPQSPWGMSMPREVLLKIFDYVISSLGTLPSVIRLGRVCKLWHSVSCTPDLWKSVDLAQYTIEKCKTDYKLVWLLENRLSQCQSLNIAQWKVCNIGWVLTSVAECCPNLTELSVAGWSRITAEQLYEILRSLPNLQRLDLSFASETGGSGSCLTAASMARVCENFGERLTHLTLANNKFTALSQILSSVAAHCKNLEVLDISGAQATTHPAAVPLEALQKGCPKMRVFRAANAQLILASATTSQQMETNGWTQLEELSVAGEAAAERVAVGEYRLGDDALSRLVRGATRLRLLDLRGLQRLSDSGLVRVPAWDLQHLFLGGCNVTRQSNACLELICEKWSHSLLELDLSWASAARVLDDAVSALADSTTSKLRILNLCGSSVSLEPVKKVLLRCPHLEYLNLSSCRALPRGMKRSYAGKELQDLKDSFDPVKIKAKEEKDVETTTPKKGTKKTQPDSKSDTDAKETSGDLTSASDTKIDSNSLNESESKSFHFQEPKSLSDVGLSEKLSSSLEFISKSSIDGKTINSKTSDLFTSKDSIDSATSVLEERRFTRDVTPKLLSPMSQSRPDSSSTPRSESKSDFGSPHFSPVPKPDSQVQNSPDVQTETIKNNSWHLGTFKSTPTYKSEASPLNRIDSSSKMKHNKMIEQCSPTTSLENTNKRSPDVQGVKQDIKNPNTWNYGNYSPMPRQDNQFSSQRSPYSAQPSPAQPSPYSTQPSPYSAQPSPYSSQPSPYSAQPSPDTSQIVKPDLPKSGAWNTGNYSPMPKHHAPFSPHPSTHTSPDPGIDNSWGIEKFNQTAVTPTSTIESLVWGTPSFNAEPPSTVSGRSENVPSAPTLNTPPPRTWTELPSFESSVRRLNDNLSDPWSVGQFRVEPPHAVHNHFVEQNVNFDSLSSHHLGHQTQSLSNFLDDGFSETSRVD

Summary

Uniprot
A0A3S2TMW3   A0A2H1VLG2   A0A0N1IC78   A0A212EWV3   A0A194PIM8  
Pubmed
26354079    22118469   
EMBL
RSAL01000049    RVE50402.1    ODYU01003218    SOQ41670.1    KQ459937    KPJ19229.1    + More
AGBW02011886    OWR45969.1    KQ459602    KPI93276.1   
Proteomes
UP000283053    UP000053240    UP000007151    UP000053268   
Pfam
PF12937   F-box-like
Interpro
IPR036047   F-box-like_dom_sf        + More
IPR006553   Leu-rich_rpt_Cys-con_subtyp       
IPR032675   LRR_dom_sf       
IPR001810   F-box_dom       
SUPFAM
SSF81383   SSF81383       
Gene 3D
3.80.10.10    
ProteinModelPortal
A0A3S2TMW3   A0A2H1VLG2   A0A0N1IC78   A0A212EWV3   A0A194PIM8  
PDB
1FS2     E-value=8.55015e-07,     Score=131

Ontologies

KEGG
101745573    K10272 F-box and leucine-rich repeat protein 6 | (RefSeq) uncharacterized LOC101745573
GO
GO:0005515   GO:0046872   GO:0008270   GO:0016813   GO:0016020   GO:0016817   GO:0043565   GO:0016876   GO:0043039  

Topology

Length:
1278
Number of predicted TMHs:
0
Exp number of AAs in TMHs:
0.00102
Exp number, first 60 AAs:
0
Total prob of N-in:
0.00005
outside
1  -  1278
 
 

Population Genetic Test Statistics

Pi
259.744374
Theta
179.509533
Tajima's D
1.1323
CLR
0
CSRT
0.695415229238538
Interpretation
Uncertain
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