Gene

KWMTBOMO08919

Annotation

endonuclease-reverse_transcriptase_[Bombyx_mori]

Location

Bomo_Chr15(+):8195294-8197398      View in EpiBrowser

Location in the cell

Nuclear   Reliability : 2.15

CDS

ATGCGCAAACGCCAACACTGGATGACCGATGGTACGCTCGCCCTAATTGAAGAGAGACGTCGAAAGAAAGCTCAAGGCATAGACACGAACAAACTGAATGTATTGTCTGCCAATATTCAGGCCAGCTGCAGACGAGATCATAACTCTCATCTTCGTAACATTTGTGAAGAGGTCGAAAAACATGCTATGAAGCATGAATCTAGAGATCTCTACCACAAAATACGGTTCATTACCAAATCACTGCCATCTAAGACCTGGGCTATTGTAAATGATAAAAACGAACTGATAACAGAGTTGGATCAAATCTCTGAAACATGGAAGAGTTACTGTCAATCGTTATTCCAGGATCCACAGTCACGGCAATTTACAAGTACAGACCCAAACGATGAGGACTTGGAGCCAAGCATTCTCCTGTCTGAGGTTAGGGCTGCTATAAAACACCTCAAAAACAGGAAAGCGACTGGTAGAGATGCAATTCCTATTGAAACAATAAAAGCCTTAGGAGAACGCGGTGACCACATATTTCATAAGATATGCAACAGGGTATGGCAGACGGGAGTTTGGCCGTCGGAATGGACACATACCGTGTTTACTCCCCTGCATAAAAAGGGCTCTACGAAGAAATGTAACAACTATCGTCTAATTGCTCTTACATCACATTCTAGCAAAATTATGTTACATATTCTGAATGAGCGATTAAAAACCTATCTGTCCAAAGAGATTGCTCCGGAACAGGCCGGTTTCGTGAGGGGGAAAGGCACTCGGGAACAAATTTTCATCGTACGTCAGATAATTGAGAAAGCAAGAGAATTCAACAGGCCGACATACATTTGTTTTGTTGACTTCTCCAAAGCATTTGACTCGGTGAAATGGCCTGTTTTGTGGAGGACCTTACTGGATCTGGGGACACCGAAACATCTTGTGCACCTACTGAGACGCTTATATGAGAATGGTACGGCCTCGGTGCGCGCGGATGACGTTCTCTCTGATAACTTCCATCCAAGTGCTGGGGTTCGCCAAGGTTGCATTGTATCGCCGCTCTTATTCAATGCGTACACAGAAATCATAATGCGCATCACTTTGGAGAACTGGACAGATGGTGTAGCAATTGGGGGGTATAGGATTGCAAACTTGCGATACGCGGATGATACCACTTTGTTTGCAACTGATGCGCAATGCTTGGGGGAGTTACTGTCGAGGATGGAACGTGTGAGCCTTGAGTTTGGATTAAAGATTAACCGCAGTAAGACCAAGGTGATGATTGTCGATCGCGCTATGAATAACTCGCCGGACGTGACTCAAATAGCGGGTTGCGACGTGGTCCAGTCCTACATATACCTTGGGGCGTTAATCTCAAATAATGGCGGATGCATGGACGAAATCAGAAGGCGCATGGCTATCACGAGGTCGGCGATGGACGGGCTGAGGAAAGTATGGAGAAATAGAAACATAACCAAAACCACAAAGATCAGGCTCGTTAGAACACTAATATTCTCTATATTTCTATACGCTGCTGAGACGTGGACCGTGCGAGACGTGGAAAGGAAGAAAATAGACGCTCTGGAAATGTGGTGCTGGAGAAGAATGCTTGGAGTTTCGTGGACCGACTTTCGTACAAATGTCTCGATACTTCAGGAACTCGGCATCAAGCAGCGTCTATTTGGTATAGTACAGTCTCGAATGGTGAATTTCTTCGGACACGTTTCGCGACGAGATGGCCGGTCCATAGAACGCCTCGTTGTACAGGGAAGCGTTGATGGTACAAGACCGCGCGGGAGGCCACCAATGCGGTGGACCGACCAAATTAAAACTGCAGTGGGAGGTCCCCTAAATGAGTGCAGTAGAATGGCCTCGAGCAGGGAGAGATGGCGCGACATCGTGAGACGCATCAAGTCTGCCCCTTCCAACACTACATGA

Protein

MRKRQHWMTDGTLALIEERRRKKAQGIDTNKLNVLSANIQASCRRDHNSHLRNICEEVEKHAMKHESRDLYHKIRFITKSLPSKTWAIVNDKNELITELDQISETWKSYCQSLFQDPQSRQFTSTDPNDEDLEPSILLSEVRAAIKHLKNRKATGRDAIPIETIKALGERGDHIFHKICNRVWQTGVWPSEWTHTVFTPLHKKGSTKKCNNYRLIALTSHSSKIMLHILNERLKTYLSKEIAPEQAGFVRGKGTREQIFIVRQIIEKAREFNRPTYICFVDFSKAFDSVKWPVLWRTLLDLGTPKHLVHLLRRLYENGTASVRADDVLSDNFHPSAGVRQGCIVSPLLFNAYTEIIMRITLENWTDGVAIGGYRIANLRYADDTTLFATDAQCLGELLSRMERVSLEFGLKINRSKTKVMIVDRAMNNSPDVTQIAGCDVVQSYIYLGALISNNGGCMDEIRRRMAITRSAMDGLRKVWRNRNITKTTKIRLVRTLIFSIFLYAAETWTVRDVERKKIDALEMWCWRRMLGVSWTDFRTNVSILQELGIKQRLFGIVQSRMVNFFGHVSRRDGRSIERLVVQGSVDGTRPRGRPPMRWTDQIKTAVGGPLNECSRMASSRERWRDIVRRIKSAPSNTT

Uniprot

D7F175   D7F167   D7F162   D7F161   D7F163   D7F172   + More
D7F168   D5LB39   A0A402EB12   A0A402EKC4   A0A2W1BNH4   A0A402EKB1   A0A402EST4   A0A402E768   A0A402EWU2   A0A402E7R7   A0A402EBP1   A0A402F9A7   A0A402ET04   A0A402EWP9   A0A402ECS2   A0A402ET28   A0A402F4E6   A0A402F9C1   A0A402F406   A0A402E7Q0   A0A402F125   A0A402EBC2   A0A402ELM7   A0A402FC20   A0A402FAG4   A0A402F575   A0A402EEU1   A0A402EWN2   A0A402F3F3   A0A402EKM3   A0A402EZW9   A0A402EVG7   A0A402EKK1   A0A402EWI9   A0A402EBI2   A0A402EXG4   A0A443QYR6   A0A402F382   A0A402EWK9   A0A402F9T4   A0A2H6KKM9   A0A402EWI8   A0A402ET45   A0A402EL35   A0A3S3P648   A0A3Q1LQN1   A0A402F7I8   A0A402F3Q6   H3B2Y3   A0A3Q1MLZ9   A0A3Q1M6J7   A0A402ER19   A0A3Q1MJK8   A0A0J7KGF7   A0A3Q1MI63   A0A3Q1MQ02   A0A3Q1M1T7   H2YWZ5   A0A3Q1MMW6   A0A3Q1N3Y9   A0A3Q1MGH6   A0A3Q1LWU3   A0A3Q1MP18   A0A3Q1M8D1   A0A3Q1LR18   A0A3Q1LUA6   A0A3Q1MA23   A0A3Q1LXQ5   A0A3Q1M527   A0A3Q1MDY8   A0A3Q1NE48   A0A3Q1MXT5   A0A3Q1MLI2   A0A402F6U7   A0A3Q1LI58   A0A3Q1N1P1   A0A3Q1N2X2   A0A3Q1MTQ8   A0A3Q1LNZ2   A0A3Q1MZJ0   A0A3Q1LX64   A0A3Q1MWB3   A0A3Q1LXF5   A0A3Q1MLV4   A0A3Q1ML42   A0A3Q1MNB9   A0A3Q1MM54   A0A3Q1LRD2   A0A3Q1LYT3   A0A3Q1LR52  

Pubmed

20470440    28756777    29078748    19393038    9215903   

EMBL

FJ265560    ADI61828.1    FJ265552    ADI61820.1    FJ265547    ADI61815.1    + More
FJ265546    ADI61814.1    FJ265548    ADI61816.1    FJ265557    ADI61825.1    FJ265553    ADI61821.1    GU815090    ADF18553.1    BDOT01000005    GCF41419.1    BDOT01000017    GCF44634.1    KZ150025    PZC74827.1    GCF44637.1    BDOT01000038    GCF47275.1    BDOT01000002    GCF39993.1    BDOT01000056    GCF48696.1    GCF40259.1    GCF41584.1    BDOT01000150    GCF53030.1    GCF47332.1    BDOT01000054    GCF48631.1    BDOT01000006    GCF41910.1    BDOT01000039    GCF47373.1    BDOT01000101    GCF51279.1    GCF53027.1    BDOT01000094    GCF51020.1    GCF40210.1    BDOT01000077    GCF50202.1    GCF41464.1    BDOT01000022    GCF45061.1    BDOT01000183    GCF53956.1    BDOT01000165    GCF53431.1    BDOT01000105    GCF51450.1    BDOT01000008    GCF42705.1    GCF48632.1    BDOT01000090    GCF50924.1    BDOT01000018    GCF44752.1    BDOT01000069    GCF49674.1    BDOT01000049    GCF48208.1    GCF44732.1    GCF48586.1    GCF41524.1    BDOT01000059    GCF48922.1    NCKU01003098    RWS08177.1    GCF50913.1    GCF48608.1    BDOT01000156    GCF53186.1    BDSA01000081    GBE63537.1    GCF48559.1    GCF47377.1    BDOT01000020    GCF44897.1    NCKU01004395    RWS06003.1    BDOT01000130    GCF52369.1    GCF51029.1    AFYH01119920    BDOT01000031    GCF46561.1    LBMM01007694    KMQ89503.1    BDOT01000127    GCF52252.1   

Proteomes

UP000288954    UP000285301    UP000009136    UP000008672    UP000036403    UP000007875    + More

PRIDE

D7F175    D7F167    D7F162    D7F161    D7F163    D7F172    + More
D7F168    D5LB39   

Pfam

PF14529   Exo_endo_phos_2        + More
PF00078   RVT_1
PF03372   Exo_endo_phos
PF00168   C2
PF01388   ARID
PF02375   JmjN
PF02373   JmjC
PF02928   zf-C5HC2

Interpro

IPR005135   Endo/exonuclease/phosphatase        + More
IPR036691   Endo/exonu/phosph_ase_sf       
IPR000477   RT_dom       
IPR002138   Pept_C14_p10       
IPR035892   C2_domain_sf       
IPR000008   C2_dom       
IPR030431   FAM189       
IPR016024   ARM-type_fold       
IPR017956   AT_hook_DNA-bd_motif       
IPR039776   Pds5       
IPR003349   JmjN       
IPR001606   ARID_dom       
IPR004198   Znf_C5HC2       
IPR036431   ARID_dom_sf       
IPR003347   JmjC_dom       

SUPFAM

SSF56219   SSF56219        + More
SSF48371   SSF48371       
SSF46774   SSF46774       

Gene 3D

3.60.10.10     2.60.40.150     1.10.150.60    

ProteinModelPortal

D7F175   D7F167   D7F162   D7F161   D7F163   D7F172   + More
D7F168   D5LB39   A0A402EB12   A0A402EKC4   A0A2W1BNH4   A0A402EKB1   A0A402EST4   A0A402E768   A0A402EWU2   A0A402E7R7   A0A402EBP1   A0A402F9A7   A0A402ET04   A0A402EWP9   A0A402ECS2   A0A402ET28   A0A402F4E6   A0A402F9C1   A0A402F406   A0A402E7Q0   A0A402F125   A0A402EBC2   A0A402ELM7   A0A402FC20   A0A402FAG4   A0A402F575   A0A402EEU1   A0A402EWN2   A0A402F3F3   A0A402EKM3   A0A402EZW9   A0A402EVG7   A0A402EKK1   A0A402EWI9   A0A402EBI2   A0A402EXG4   A0A443QYR6   A0A402F382   A0A402EWK9   A0A402F9T4   A0A2H6KKM9   A0A402EWI8   A0A402ET45   A0A402EL35   A0A3S3P648   A0A3Q1LQN1   A0A402F7I8   A0A402F3Q6   H3B2Y3   A0A3Q1MLZ9   A0A3Q1M6J7   A0A402ER19   A0A3Q1MJK8   A0A0J7KGF7   A0A3Q1MI63   A0A3Q1MQ02   A0A3Q1M1T7   H2YWZ5   A0A3Q1MMW6   A0A3Q1N3Y9   A0A3Q1MGH6   A0A3Q1LWU3   A0A3Q1MP18   A0A3Q1M8D1   A0A3Q1LR18   A0A3Q1LUA6   A0A3Q1MA23   A0A3Q1LXQ5   A0A3Q1M527   A0A3Q1MDY8   A0A3Q1NE48   A0A3Q1MXT5   A0A3Q1MLI2   A0A402F6U7   A0A3Q1LI58   A0A3Q1N1P1   A0A3Q1N2X2   A0A3Q1MTQ8   A0A3Q1LNZ2   A0A3Q1MZJ0   A0A3Q1LX64   A0A3Q1MWB3   A0A3Q1LXF5   A0A3Q1MLV4   A0A3Q1ML42   A0A3Q1MNB9   A0A3Q1MM54   A0A3Q1LRD2   A0A3Q1LYT3   A0A3Q1LR52  

KEGG

105841937    no KO assigned | (RefSeq) uncharacterized LOC105841937

GO

GO:0004519   GO:0003964   GO:0004197  

PANTHER

PTHR17615   PTHR12663  

Subcellular location

Nucleus  

Length:

638

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

2.33383

Exp number, first 60 AAs:

0

Total prob of N-in:

0.08105

outside

1  -  638

 

 

Pi

3.175698

Theta

37.530812

Tajima's D

1.097043

CLR

0

CSRT

0.691165441727914

Interpretation

Uncertain