Gene

KWMTBOMO08916

Pre Gene Modal

BGIBMGA007717

Annotation

PREDICTED:_zinc_finger_CCCH-type_with_G_patch_domain-containing_protein_[Amyelois_transitella]

Location

Bomo_Chr15(+):8138794-8148540      View in EpiBrowser

Full name

Zinc finger CCCH-type with G patch domain-containing protein      

Location in the cell

Nuclear   Reliability : 4.214

CDS

ATGGAAGACCTTGAATCGTCTTTAAATCAATACAAAGAACAAATTAAAATTGTGCAGCAATCCCTAGAAGCCACACATGACCTCAAAGAGAAAGAGTCTCTTTTAACACTACAATCTGATTTAAATCAACTAATTGAATTAACTCGAGAGAGCTTAGCAACAGCGACCAGCAAACATTTAAAATCCGATCTACAGAACAATGAGCAGAATAATTTGGATGAGGAATATGCTAGGTTCATGGCAGAAATGAATGACTCAAATGCATACAATGATGATAGCAAAAACAAAAATGATTCAGAAGAAAATAATGGCAACAGTGACATAGAGGATGACCTCTCTAGTTTATTGGGTATGAGGTGTGCTGTTTATCATACACACAAATGGGGTGGCCAGCCTAGTCTACACAATGCTATGGTCAGCTCGATACTGCCTAGGGCAGATGATGACCAATTCAATGATCTTAAGGTTCAAATATTATTTACTCATCCAACCCATGCAGAAATGTTGCCTTGTCCATTTTACCTAGATGGAGATTGTAAGTTTAGTGATGAACAATGCAGATATTCGCATGGTAATGTTGTACAACTGTCTGACCTAAAAGAAGCAATAGAACCGAATTTCAGTTCACTTAAATCCGGTAGCAGTATTTTGTTGAAATTGAAACCGCCAGATGATGAGAATGTAAGCATAACAAAAAAGTCTACAGAAAAATATCATCTATGGCATAGGGGAATAGTGAAATCTATAGACAATGAAAACCAATTGTGCACAGTTAAATTGGAGCACGGCGTTAAAACCGGCGAAAAAAGGAAGATGGGATCAGATGAAATTAATGTGCGCATCGAAGATATTTTCCCTCTTACCACCGTATGCGAAGATGATTCGGATTCCAGTGAAGATCTGAGCGACTCTGAATATTCCCATCAGAAAACAACACGAACGGAAATCGACAGACACGCGCTTATCGTCGAAAAGAGCTTACAGAATAATGCACCAGCTATGGGAGAGTGGGAGCGACATACTAGAGGTATAGGCTCGAAGATTATGTTCGCCATGGGCTATGTTGCGGGCTCCGGTTTGGGCGCCGCGGGCGAGGGGCGGACGCAGCCGGTTGAAGCGCGGGTGTTGCCCGTCGGGAAGAGCTTAGACCATTGCATGGCGATCAGTGAGAAACACGCCGGTCAGGATCCATTGAAGGTAACATTAACGGTTCTGATATAG

Protein

MEDLESSLNQYKEQIKIVQQSLEATHDLKEKESLLTLQSDLNQLIELTRESLATATSKHLKSDLQNNEQNNLDEEYARFMAEMNDSNAYNDDSKNKNDSEENNGNSDIEDDLSSLLGMRCAVYHTHKWGGQPSLHNAMVSSILPRADDDQFNDLKVQILFTHPTHAEMLPCPFYLDGDCKFSDEQCRYSHGNVVQLSDLKEAIEPNFSSLKSGSSILLKLKPPDDENVSITKKSTEKYHLWHRGIVKSIDNENQLCTVKLEHGVKTGEKRKMGSDEINVRIEDIFPLTTVCEDDSDSSEDLSDSEYSHQKTTRTEIDRHALIVEKSLQNNAPAMGEWERHTRGIGSKIMFAMGYVAGSGLGAAGEGRTQPVEARVLPVGKSLDHCMAISEKHAGQDPLKVTLTVLI

Description

Transcription repressor.

Keywords

Complete proteome   DNA-binding   Metal-binding   Nucleus   Reference proteome   Repressor   Transcription   Transcription regulation   Zinc   Zinc-finger  

Feature

chain  Zinc finger CCCH-type with G patch domain-containing protein

Uniprot

H9JDX0   A0A2H1WAK1   A0A2A4J0N8   A0A212EWW6   A0A194PIM3   A0A0L7KSW1   + More
A0A1E1WS37   A0A0N1IJG9   A0A3S2LND6   A0A084W9U9   A0A310SRR2   A0A067QUN9   A0A2A3EGG4   A0A088AK31   A0A182LQX7   A0A182N6A0   A0A182KAE3   A0A182XGH3   E2BTC9   Q17CQ8   A0A154PI93   A0A182VLD2   A0A232F8Y2   A0A182PNC1   A0A1Y1MMT3   Q7PYU6   A0A1W4X748   A0A182Q6B9   A0A182JM81   A0A023EUK9   A0A182H3T6   A0A182GFG8   A0A2J7PIZ6   A0A182HZV3   E9IWB0   A0A2J7PIZ9   A0A0J7KDV6   W5JQ79   E2ARD4   A0A1B6LBU8   A0A182VRE0   A0A182SA81   A0A151I503   A0A0K8TRQ5   E0VVN3   A0A1B6DI03   A0A158NQC3   A0A182F7Y7   A0A182M3F4   A0A182RT79   A0A182XW29   F4WBB8   A0A151JPY2   A0A151JU37   A0A0L7R5F0   W8B6I9   A0A3L8DNJ6   B3MPC0   A0A0A1X518   B4KH32   A0A151WGF4   B4JCG4   A0A182U2V9   A0A1B6F6I4   A0A026WRJ3   Q29NF3   A0A3B0JX36   B4G7U3   B4M9F7   A0A131YTE7   A0A131XE51   T1HVF0   A0A131YRT5   X2JA03   Q9VL59   A0A224Z479   B3N8L3   A0A1E1XMK9   B4NYQ2   B4HWD7   A0A0P4VWB6   R7UKD3   L7M923   T1DSU9   A0A151IDY5   A0A0L0CGS9   A0A1I8M0Y0   A0A0J9QZN4   B4Q8A7   A0A1E1XB38   A0A1W4UUA2   T1IUR7   A0A2R5LDK1   A0A147BRI6   B7P636   A0A2S2R8N7   A0A146MDD8   A0A210Q1P6   A0A0Q9WWP5  

Pubmed

19121390    22118469    26354079    26227816    24438588    24845553    + More
20966253    20798317    17510324    28648823    28004739    12364791    24945155    26483478    21282665    20920257    23761445    26369729    20566863    21347285    25244985    21719571    24495485    30249741    17994087    25830018    24508170    15632085    26830274    28049606    10731132    12537568    12537572    12537573    12537574    16110336    17569856    17569867    12537569    28797301    29209593    27129103    23254933    25576852    26108605    25315136    22936249    28503490    29652888    26823975    28812685   

EMBL

BABH01002655    BABH01002656    ODYU01007381    SOQ50088.1    NWSH01004140    PCG65439.1    + More
AGBW02011886    OWR45973.1    KQ459602    KPI93271.1    JTDY01006025    KOB66357.1    GDQN01001215    JAT89839.1    KQ459937    KPJ19227.1    RSAL01000049    RVE50404.1    ATLV01021917    KE525325    KFB46993.1    KQ759867    OAD62467.1    KK852930    KDR13643.1    KZ288256    PBC30574.1    GL450389    EFN81050.1    CH477305    KQ434923    KZC11527.1    NNAY01000700    OXU26919.1    GEZM01029655    JAV86010.1    AAAB01008987    AXCN02000277    GAPW01000977    JAC12621.1    JXUM01024830    KQ560702    KXJ81225.1    JXUM01059565    KQ562060    KXJ76781.1    NEVH01024952    PNF16311.1    APCN01002014    GL766483    EFZ15142.1    PNF16317.1    LBMM01009110    KMQ88384.1    ADMH02000423    ETN66567.1    GL442048    EFN64005.1    GEBQ01018815    JAT21162.1    KQ976451    KYM85601.1    GDAI01000780    JAI16823.1    DS235812    EEB17439.1    GEDC01011994    JAS25304.1    ADTU01023123    ADTU01023124    ADTU01023125    AXCM01000396    GL888062    EGI68474.1    KQ978756    KYN28575.1    KQ981788    KYN35793.1    KQ414654    KOC65986.1    GAMC01012338    JAB94217.1    QOIP01000006    RLU22015.1    CH902620    GBXI01007873    JAD06419.1    CH933807    KQ983176    KYQ46904.1    CH916368    GECZ01024306    JAS45463.1    KK107128    EZA58311.1    CH379060    OUUW01000010    SPP85633.1    CH479180    CH940654    GEDV01007376    JAP81181.1    GEFH01004223    JAP64358.1    ACPB03015772    GEDV01007377    JAP81180.1    AE014134    AHN54302.1    AY058650    GFPF01013471    MAA24617.1    CH954177    GFAA01003108    JAU00327.1    CM000157    CH480818    GDKW01000190    JAI56405.1    AMQN01001209    KB300511    ELU06660.1    GACK01005450    JAA59584.1    GAMD01001319    JAB00272.1    KQ977901    KYM98891.1    JRES01000418    KNC31441.1    CM002910    KMY89373.1    CM000361    GFAC01002728    JAT96460.1    JH431553    GGLE01003379    MBY07505.1    GEGO01002038    JAR93366.1    ABJB010334862    ABJB010663500    DS644093    EEC02058.1    GGMS01017224    MBY86427.1    GDHC01001873    JAQ16756.1    NEDP02005240    OWF42647.1    CH969605    KRG00459.1   

Proteomes

UP000005204    UP000218220    UP000007151    UP000053268    UP000037510    UP000053240    + More
UP000283053    UP000030765    UP000027135    UP000242457    UP000005203    UP000075882    UP000075884    UP000075881    UP000076407    UP000008237    UP000008820    UP000076502    UP000075903    UP000215335    UP000075885    UP000007062    UP000192223    UP000075886    UP000075880    UP000069940    UP000249989    UP000235965    UP000075840    UP000036403    UP000000673    UP000000311    UP000075920    UP000075901    UP000078540    UP000009046    UP000005205    UP000069272    UP000075883    UP000075900    UP000076408    UP000007755    UP000078492    UP000078541    UP000053825    UP000279307    UP000007801    UP000009192    UP000075809    UP000001070    UP000075902    UP000053097    UP000001819    UP000268350    UP000008744    UP000008792    UP000015103    UP000000803    UP000008711    UP000002282    UP000001292    UP000014760    UP000078542    UP000037069    UP000095301    UP000000304    UP000192221    UP000001555    UP000242188    UP000007798   

PRIDE

H9JDX0    Q17CQ8    B4KH32    B4JCG4    X2JA03    Q9VL59    + More
B4NYQ2   

Pfam

PF01585   G-patch        + More
PF00567   TUDOR
PF18044   zf-CCCH_4

Interpro

IPR000467   G_patch_dom        + More
IPR000571   Znf_CCCH       
IPR002999   Tudor       
IPR041367   Znf-CCCH_4       

ProteinModelPortal

H9JDX0   A0A2H1WAK1   A0A2A4J0N8   A0A212EWW6   A0A194PIM3   A0A0L7KSW1   + More
A0A1E1WS37   A0A0N1IJG9   A0A3S2LND6   A0A084W9U9   A0A310SRR2   A0A067QUN9   A0A2A3EGG4   A0A088AK31   A0A182LQX7   A0A182N6A0   A0A182KAE3   A0A182XGH3   E2BTC9   Q17CQ8   A0A154PI93   A0A182VLD2   A0A232F8Y2   A0A182PNC1   A0A1Y1MMT3   Q7PYU6   A0A1W4X748   A0A182Q6B9   A0A182JM81   A0A023EUK9   A0A182H3T6   A0A182GFG8   A0A2J7PIZ6   A0A182HZV3   E9IWB0   A0A2J7PIZ9   A0A0J7KDV6   W5JQ79   E2ARD4   A0A1B6LBU8   A0A182VRE0   A0A182SA81   A0A151I503   A0A0K8TRQ5   E0VVN3   A0A1B6DI03   A0A158NQC3   A0A182F7Y7   A0A182M3F4   A0A182RT79   A0A182XW29   F4WBB8   A0A151JPY2   A0A151JU37   A0A0L7R5F0   W8B6I9   A0A3L8DNJ6   B3MPC0   A0A0A1X518   B4KH32   A0A151WGF4   B4JCG4   A0A182U2V9   A0A1B6F6I4   A0A026WRJ3   Q29NF3   A0A3B0JX36   B4G7U3   B4M9F7   A0A131YTE7   A0A131XE51   T1HVF0   A0A131YRT5   X2JA03   Q9VL59   A0A224Z479   B3N8L3   A0A1E1XMK9   B4NYQ2   B4HWD7   A0A0P4VWB6   R7UKD3   L7M923   T1DSU9   A0A151IDY5   A0A0L0CGS9   A0A1I8M0Y0   A0A0J9QZN4   B4Q8A7   A0A1E1XB38   A0A1W4UUA2   T1IUR7   A0A2R5LDK1   A0A147BRI6   B7P636   A0A2S2R8N7   A0A146MDD8   A0A210Q1P6   A0A0Q9WWP5  

PDB

4II1     E-value=3.13941e-11,     Score=165

KEGG

101738747    no KO assigned | (RefSeq) zinc finger CCCH-type with G patch domain-containing protein

GO

GO:0046872   GO:0003676   GO:0005634   GO:0003677   GO:0008270   GO:0016813   GO:0016020   GO:0016817   GO:0043565   GO:0016876   GO:0043039  

Subcellular location

Nucleus  

Length:

406

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.08546

Exp number, first 60 AAs:

0

Total prob of N-in:

0.00368

outside

1  -  406

 

 

Pi

223.897796

Theta

158.532568

Tajima's D

1.005443

CLR

0.23632

CSRT

0.654267286635668

Interpretation

Uncertain