SGID Silkworm Genome Informatics Database
Gene
KWMTBOMO08911
Annotation
PREDICTED:_mucin-5AC_[Amyelois_transitella]
Location
Bomo_Chr15(+):7938244-7992157      View in EpiBrowser
Location in the cell
Nuclear   Reliability : 3.698
 

Sequence

CDS
ATGGGGCGGCGACGATGGAGGTTCGTGACGATCGCAGCCTTCTTGCTGTTTATTATAAAAGACACGCAATGTCAAGATGAAAATGACTTCGACTATCCACTGGTGGAACGAAGTTTTGCTCAAGTTCAACCCCCCTTATTTTCAAATGTTCGACCGACGACATTTTTTGAACACGGTGACAGTTATAGAATCCCAAGGCCCTCGCAACAACCGCTTTATAATCAAGGAAACGTAAGGTTTCCTAGCCCAAACTACAATCAAAATCCATCACCGTTTCAACTACCTACAGGAAGGAGTCAGTCTGGAGCCCAGTACTATATTAATCAACCAGAATTCACGCCGCAGCGGCAGAGATTTAGACCTGCATTACCTTATAATTTTCAACTTCATCCAGCTTCTACAAAACGACCTGAAGTTTCACAAATCCACTCGGTCGCTTATCAAAACGATCCATCGAAACCAGAAACGTTTCTGGGTCAAATAACTTTAAACAATCCCGACATAGATTACTTACAAAATAATAGATTCAAAAACATTCCATTTGACGGTAGTAACAGTTTAAAAACCAGCATTCAGAATGGACATTTAATTCGTGATGACATAGATATTGACACTGATAACCAAGACCTATTCGAGCAGCACAGAGTTACAACCTACAATCCTACTAAGCTTGTTAGCAAGCCCAAATTGAATGGCAAACCTGCAAGATTTTCGCACTTTGTTCCTCCGCTAGCCAATAATAAACCGAATTCACAAAATACACCTTTCCACACAAGAAACAATTTGACACCGGTAAAAACGAATGCTAACATATTATATCATAGTTCTACCGAATATAAAGCTTTATTAGATTTGGAACCACTTCTTGAAGAAGAAATTAGCGATTTAAGTACCTTTAGAGAATTAATGAAAAACACACAGGGTTCACATGACGTTCAAGTCATAAAACCTAATACAACTGATGATTCTGAAGCATTTGACGATAGTAAGCCTGATGCTAGTTATATGAATACCGATAATGTACCTAATTCAGATAAAAGCCAATTCCTTAAAGTAACAACTAGCTCTTCATCACCTGCTCCAACAACTATATCAACAAGTACTACCACTGCTAGTAATACACACGTTGATGAGGATAATGATGATATCTTGGATGACGAGGAATTTGTTGAGTATTACGATGATGTAGATAGTTCGGAAGTCAAACCAACTGTGCAGACGCCACATCATTCCTCTGAACATGTAACCGATATTTATGATGATTACGATTCTACGGAAGAGCCTGAAAGCTCCACAGATGGTGTAGAAACAAACGTGACAAAGGCTTTCGATGTCCTTGTAACGAATCCTAACAATACAATGGTTAAAGATGATAACTTTAAGCATTTTGTTGACACAACAGTAATAGACCAGTTAGATGGTAAAAAAGAATTGACAAGTCCTAATACTTATATACCAGTGTCGGAAGAAATAACTTCTATTGAGCCACCATCTATTTTAGGACAAGAAGTAGTTTCAGTTGTGACTACGAAAAGTGTTGTGAATGGTACTATATCTATTCCTGATGTAACATATGCTCCTAGTACTGCAAAAATTAATACAGAAACTGATACTATGTTATCCACAGTTAAGAATCATCAGAATGATTCTTCATCACCGATCACAACAGAAAGCTGGATTGTTGTTGCTTCAGTGCAAACAAGTCGAAGTGTCTCCGGTGCTCGATTTTTACCTTTCCCAACTGTCGAACAAGAAGAAAAGAAACAAGTCTTAGCCGATGACAGTGATGAAGAAGATCAAGAAAATGTAACCAGAGACCCAAAACAAGACATTGGTGCTAGCAGTGGTAGTTCATCAACAGAAAACATTAATGACAAATTAGATAGTATACAGTCAGAATTATCTAGTGCTGTTTTATCAGGAAGTTTAGACAACGAGAACAAAAATATTGAACTTATAACAGAATCTACAACTGAAAAAACTTCAACACCATCTACTACTACCACTACCACAACAACAACTACTACTACTACTACAACAACAACAACCACGCCTGCAGTTCCAAATGTTTTCACCTTGAAGAGTACTCAGCCACCGTCGACAACAGTTAGATCTGCACCAGAACCGTTACCAGTAATGGTCAAAAAGTTTGCACCTAGAGTAACATCGTCCACAACACCGAAACCAAAGAAAAAATTAGTTACAGTAATGGATGAATTGCCTGTGGGTCTCTTACCTGCTGGATATAAACCTAGGTCGTCGTTCAAAGATAAGCGAACTACTTCGACCACGACTACAACAAGTACATCTCGACCTCGTGTTAATGGAGCACCAATTATAAATAGTACGCAAGCACGATCATCTGGAATAAATAGTCAAAATAAGGTTATTATTCTAGATGATAAATCACTCCTTCCTAAAGAATACAGACCGAAAGACCATAAATCACAAGAAGAGGTGAAAAAAATCCAAAAGCACGATTCAAGTACATTGCTACCACCTAGCGATAAAAATCCTACAGAAGCACCACTAATAAATCAAACGACAACGGTTAGTTTGTTGAATAATATAGATACTGTGGATATATCAGCATTTTTGCCCAAAGGATTTAATTTAAGCGCCACAACAGAGACAAAACCAAAAGAAGTCATAAAACCTATAGCAGTACCTGTCGACATCCGAGCGCTATTACCTCCAGGTTTCAAATTGAACGGAACAGAAAATAATTCAGACGAAAGTCCAATTGTAAAATTGACCGTTGCCGACGTTTCCAACTTATTACCACCAGGGTTTAAATTAAATGATACAGATACAGAATCTGTTTCGTCTAGTTCTACAACCAAAGCACCAGGGGGTATCAAATTAGTTTTCCCTTCAAGACCAGGAGGAAAAGTCAATAGGAAAACTACTACACCTAAATCATTAGGTCCATCACCCGTTACACCAAAGATACAAAAGGGATGGCCCACCAGGGCTTCAACTGAATTCACGGGCTGGCCTTCACCATCGACAACTCCATTTTCGATTGAAAAGCTCTTGGAAGCTCAGAGAAATGCAACTGCTACAAGTCCACTACCTGAATTTAGTACTGAAGCAACGACACGACGATCCACGACTACGACAACTACGACCCCAGTACCGCCACCTTCGACTACTCCCGGTGTATGCCGTAAAGAATGTGATATAGCAGCTACTATCAAAATTGTTTCAGGAGTCAAGTGGGTACCCGAACTACTAGATCACCATACAGACGAATGGCAAAATCTTGCAAAAGATGTCAAAGAAGAGCTCAATTCTGTGTATTCGAAATCGGATAATTTAAGAAAATGGTATAAAAATATTCGAATTGACGGATTCAGTGAGGGTTCTGTTCTGGTTGACTATTTCATTGAACTGAACAATGTAGAAGAAAGAATAAACACGCTAGATTTGAAGAAAATATTCCATAAATCACTTCATGAGGCTAGACCAGGCTCAGTAGTCGAAACGGTAACAACACCACGAAACGATGATGAGTTTGATCCAGATGTGATGCTTGGAGATCAACCAGATGAAGAAAGAATGAAAAAAAGTAACGAAAAAATGACAAAAACAATAGATAAATCGGCAGGAAAATTAGAGATAGGTAAATTTGTTATGGATCCTGCATATACGGAATTCATTGTTTTACCGAAGCGTGATGAGCCTACAATGGTGGTTCCTGATGAAGAATCACTTTTACCTCAATGGGGCATTGCAGTTATTGTCATAGCATTAGCCTCCCTGCTATTCGTCGTCATTTTTGGAGTTACAGTCTTGGTGAATCGGCAAAAAAGTGCCAAGGCAAAAGCACCTATACCGTTGAGTGAAGAGATGCTTCGAGATTTAGACAAAAGTCATATGGGTGGCTTTGATGACATGCATCAGTTAAAAGAACGGGACTTACCTTATCTTCCATCAGGAAAGCGTATGTCAACTGCTTTCATTGAGCAATTAGCATACCCGAACCCTGGTGACTCTTGGCGATCGGAGTGGACGCCGCAATTACAGAAATATATGCAGCATTATACGCCAGATTCGGGTCGGGGATCACAAACTTATGGTCCAACGAACAATGGTTATGGATTCAGTGCTTCCCAAATATATGGACAGACAGGAGGCGGATCCCAAATATACGGTTACACGGGCGAATACCCGCGTGCTCACTACCCGCGACGACGCTCCGACTACGACAGCAACTTCTAG
Protein
MGRRRWRFVTIAAFLLFIIKDTQCQDENDFDYPLVERSFAQVQPPLFSNVRPTTFFEHGDSYRIPRPSQQPLYNQGNVRFPSPNYNQNPSPFQLPTGRSQSGAQYYINQPEFTPQRQRFRPALPYNFQLHPASTKRPEVSQIHSVAYQNDPSKPETFLGQITLNNPDIDYLQNNRFKNIPFDGSNSLKTSIQNGHLIRDDIDIDTDNQDLFEQHRVTTYNPTKLVSKPKLNGKPARFSHFVPPLANNKPNSQNTPFHTRNNLTPVKTNANILYHSSTEYKALLDLEPLLEEEISDLSTFRELMKNTQGSHDVQVIKPNTTDDSEAFDDSKPDASYMNTDNVPNSDKSQFLKVTTSSSSPAPTTISTSTTTASNTHVDEDNDDILDDEEFVEYYDDVDSSEVKPTVQTPHHSSEHVTDIYDDYDSTEEPESSTDGVETNVTKAFDVLVTNPNNTMVKDDNFKHFVDTTVIDQLDGKKELTSPNTYIPVSEEITSIEPPSILGQEVVSVVTTKSVVNGTISIPDVTYAPSTAKINTETDTMLSTVKNHQNDSSSPITTESWIVVASVQTSRSVSGARFLPFPTVEQEEKKQVLADDSDEEDQENVTRDPKQDIGASSGSSSTENINDKLDSIQSELSSAVLSGSLDNENKNIELITESTTEKTSTPSTTTTTTTTTTTTTTTTTTTPAVPNVFTLKSTQPPSTTVRSAPEPLPVMVKKFAPRVTSSTTPKPKKKLVTVMDELPVGLLPAGYKPRSSFKDKRTTSTTTTTSTSRPRVNGAPIINSTQARSSGINSQNKVIILDDKSLLPKEYRPKDHKSQEEVKKIQKHDSSTLLPPSDKNPTEAPLINQTTTVSLLNNIDTVDISAFLPKGFNLSATTETKPKEVIKPIAVPVDIRALLPPGFKLNGTENNSDESPIVKLTVADVSNLLPPGFKLNDTDTESVSSSSTTKAPGGIKLVFPSRPGGKVNRKTTTPKSLGPSPVTPKIQKGWPTRASTEFTGWPSPSTTPFSIEKLLEAQRNATATSPLPEFSTEATTRRSTTTTTTTPVPPPSTTPGVCRKECDIAATIKIVSGVKWVPELLDHHTDEWQNLAKDVKEELNSVYSKSDNLRKWYKNIRIDGFSEGSVLVDYFIELNNVEERINTLDLKKIFHKSLHEARPGSVVETVTTPRNDDEFDPDVMLGDQPDEERMKKSNEKMTKTIDKSAGKLEIGKFVMDPAYTEFIVLPKRDEPTMVVPDEESLLPQWGIAVIVIALASLLFVVIFGVTVLVNRQKSAKAKAPIPLSEEMLRDLDKSHMGGFDDMHQLKERDLPYLPSGKRMSTAFIEQLAYPNPGDSWRSEWTPQLQKYMQHYTPDSGRGSQTYGPTNNGYGFSASQIYGQTGGGSQIYGYTGEYPRAHYPRRRSDYDSNF

Summary

Uniprot
A0A2A4K8T3   A0A2H1WIZ0   A0A437BJ03   A0A0N0PE83   A0A194PKK5   A0A212F3X4   + More
A0A1B6C1I8   T1PFT9   A0A1I8N4Y5   A0A1I8PQZ0   A0A1A9YCX9   A0A1B0BRW6   A0A1A9ZAH8   B4KN04   A0A1A9UI96   A0A1B0FMJ4   B4LMV8   A0A0J9RGI5  
Pubmed
26354079    22118469    25315136    17994087    22936249   
EMBL
NWSH01000058    PCG80090.1    ODYU01008984    SOQ53043.1    RSAL01000049    RVE50412.1    + More
KQ459937    KPJ19222.1    KQ459602    KPI93264.1    AGBW02010474    OWR48437.1    GEDC01029915    GEDC01009549    JAS07383.1    JAS27749.1    KA647621    AFP62250.1    JXJN01019350    CH933808    EDW09926.2    CCAG010011496    CH940648    EDW61049.2    CM002911    KMY94639.1   
Proteomes
UP000218220    UP000283053    UP000053240    UP000053268    UP000007151    UP000095301    + More
UP000095300    UP000092443    UP000092460    UP000092445    UP000009192    UP000078200    UP000092444    UP000008792   
Pfam
PF01390   SEA
Interpro
IPR000082   SEA_dom        + More
IPR036364   SEA_dom_sf       
SUPFAM
SSF82671   SSF82671       
ProteinModelPortal
A0A2A4K8T3   A0A2H1WIZ0   A0A437BJ03   A0A0N0PE83   A0A194PKK5   A0A212F3X4   + More
A0A1B6C1I8   T1PFT9   A0A1I8N4Y5   A0A1I8PQZ0   A0A1A9YCX9   A0A1B0BRW6   A0A1A9ZAH8   B4KN04   A0A1A9UI96   A0A1B0FMJ4   B4LMV8   A0A0J9RGI5  

Ontologies

KEGG
101745723    no KO assigned | (RefSeq) mucin-5AC
GO
GO:0016021  

Topology

SignalP
Position:   1 - 24,         Likelihood:  0.967784
 
 
Length:
1407
Number of predicted TMHs:
1
Exp number of AAs in TMHs:
23.08547
Exp number, first 60 AAs:
0.09304
Total prob of N-in:
0.00546
outside
1  -  1244
TMhelix
1245  -  1267
inside
1268  -  1407
 
 

Population Genetic Test Statistics

Pi
255.010927
Theta
206.563655
Tajima's D
0.7092
CLR
0.538515
CSRT
0.581720913954302
Interpretation
Uncertain
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