SGID Silkworm Genome Informatics Database
Gene
KWMTBOMO08908
Annotation
PREDICTED:_zinc_metalloproteinase_nas-13-like_isoform_X3_[Bombyx_mori]
Full name
Metalloendopeptidase      
Location in the cell
Cytoplasmic   Reliability : 1.448 Extracellular   Reliability : 1.197
 

Sequence

CDS
ATGTTTATTATTTTGTCTGCAATATTACTTATTAGTGTGAAAGCTGCACCTGTTCCCGATGAATTAGTTGATGATGAAGAAATTGAAATAATAATTGGTGGGTTATCTGAGTTATCGAATAAATCGTGTGTCGAATTCCGAGCCAGAGAAGGCGACGAGTATGCTGTGATTATAGAGAGTAGTGCGAACGGCTGTTTCTCCAGAGTGGGGTTTAGCAAAGGCGATCATGAGGATGGAATTAATCAAGTTCTAAATCTCGGTAAAGGATGCATTAGACACGGAGTCGTCATTCATGAAATGTTGCACACCCTCGGATTTTATCACATGCAGAGTACATACGACAGAGATGACTTTGTTAAAATCGTGTGGGAAAATATTGCATCTGGACATGAACATAACTTTGAGATGTACAAGAATGACACAGTGACAGATTTCGGAGTTCCCTACGACTACGGTAGCGTAATGCATTATTCAGAGCATGCGTTCTCTAAAAATGGAGAAAAAACAATAATTCCGTTGCAGGAAAACGTGAAAATAGGTCAGAGAGATGCTTTATCTATCAGCGATATAGAAAAGTTAAACAAAATGTATTGTGCTGACGAGAACCTCGCACGCGCGCCTCTAAACTAG
Protein
MFIILSAILLISVKAAPVPDELVDDEEIEIIIGGLSELSNKSCVEFRAREGDEYAVIIESSANGCFSRVGFSKGDHEDGINQVLNLGKGCIRHGVVIHEMLHTLGFYHMQSTYDRDDFVKIVWENIASGHEHNFEMYKNDTVTDFGVPYDYGSVMHYSEHAFSKNGEKTIIPLQENVKIGQRDALSISDIEKLNKMYCADENLARAPLN

Summary

Cofactor
Zn(2+)
Feature
chain  Metalloendopeptidase
EC Number
3.4.24.-
EMBL
KQ459602    KPI93260.1    KQ459937    KPJ19219.1    NWSH01000058    PCG80078.1    + More
RSAL01000401    RVE41920.1    ODYU01011338    SOQ57025.1    PCG80092.1    PCG80093.1    GBYB01013139    JAG82906.1    RVE41921.1    GBYB01001991    JAG71758.1    PYGN01001103    PSN37554.1    GL434776    EFN74588.1    KPI93261.1    KQ435936    KOX68305.1    ODYU01000638    SOQ35753.1    JXUM01099345    KQ564484    KXJ72215.1    LBMM01003276    KMQ93717.1    JXUM01086354    JXUM01086355    GL446201    EFN88281.1    AAZX01009351    QOIP01000001    RLU27314.1    KQ414646    KOC66604.1    KK107260    EZA54126.1    GL888828    EGI57769.1    KPJ19220.1    CH477215    EAT47551.1    AXCN02001809    DS232839    EDS26029.1    GDHF01013198    JAI39116.1    CH916370    EDV99812.1    ADMH02000766    ETN65116.1    CH940651    KRF82521.1    KQ976438    KYM86823.1    JXJN01008602    CH379065    EAL31439.2    CH479218    EDW33769.1    ADTU01012326    ADTU01012327    ADTU01012328    GAMD01001161    JAB00430.1    KQ978057    KYM97749.1    GAMC01004723    JAC01833.1    EDW65979.1    GAKP01005096    JAC53856.1    GDHF01012102    JAI40212.1    APCN01003503    CCAG010010601    KQ980341    KYN16417.1    KQ982776    KYQ50764.1    JRES01000348    KNC32032.1    CH902625    EDV35049.1    CM000162    EDX02754.1    CH933814    EDW05709.1    CH954180    EDV46620.1    AE014298    AAF48872.1    CH480823    EDW56053.1    KQ981744    KYN36456.1    GAMC01004721    JAC01835.1    OUUW01000003    SPP77902.1    GAMC01004719    GAMC01004718    JAC01837.1    AAAB01008979    EAA13734.4    CH964239    EDW82804.1    JXUM01008840    KQ560270    KXJ83413.1    QCYY01002014    ROT73629.1    GAKP01004672    GAKP01004671    JAC54280.1    GDHF01017706    JAI34608.1    CP012528    ALC49373.1    ACPB03028567    ACPB03028568    CH480818    EDW51845.1    CM000157    EDW89734.1    AE014134    AY113485    AAF53470.1    AAM29490.1    AHN54473.1    CM000361    CM002910    EDX05145.1    KMY90388.1    PYGN01002500    PSN30375.1    GEDC01024827    GEDC01018357    JAS12471.1    JAS18941.1    CH479189    EDW25426.1    APCN01003509    CH954177    EDV58036.1   
Pfam
PF01400   Astacin
Interpro
IPR024079   MetalloPept_cat_dom_sf        + More
IPR001506   Peptidase_M12A       
IPR034035   Astacin-like_dom       
IPR006026   Peptidase_Metallo       
IPR017050   Metallopeptidase_nem       
Gene 3D
PDB
4GWN     E-value=1.52384e-30,     Score=328

Ontologies

Topology

SignalP
Position:   1 - 15,         Likelihood:  0.996845
 
 
Length:
209
Number of predicted TMHs:
0
Exp number of AAs in TMHs:
0.00518999999999999
Exp number, first 60 AAs:
0.00424
Total prob of N-in:
0.00679
outside
1  -  209
 
 

Population Genetic Test Statistics

Pi
195.938705
Theta
149.357787
Tajima's D
0.018185
CLR
2.055629
CSRT
0.373881305934703
Interpretation
Uncertain
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