SGID Silkworm Genome Informatics Database
Gene
KWMTBOMO08907
Annotation
mariner_transposase_[Bombyx_mori]
Location in the cell
Nuclear   Reliability : 3.47
 

Sequence

CDS
ATGGAATTGACTCGAGAAAATTCAAGAGCGATGATTTATTATGACTTTCGAAGTGGTTTAACACAAAAACAGTGTGTTGATCGGATGATTTCTGCATTTGGTGATGAAGCCCCATCCAAAACCACAATTGATTGCTGGTTTGCTGAGTTTCAACGTGGACGTGTCAAGCTCAGTGATGAACCCCGTCAAGGTCGTCAAAAAGCTGCAGTCACCCAAGAAAACGTTGATGCTGTCGTTTCTGAACTCCGTAAAGAGAACTGCAACCGCCGCATCATCCTCCATCACGACAATGCGAGTTCTCACACCGCGCACAGAACAAAAGAGTTTTTAGAGCAAGAAAACATAGAATTATTAGACCATCCGCCGTACAGCCCCGACCTAAGCCCTAATGATTTCTATACTTTCCCTAAAATAAAGAATAAATTGTGTGGACAGAGATTTTCATCACCTGAAGAAGCTGTGGACGCCTACAAAACGGCCATTTTGGAGACCCCAACTTCCGAATGGAATGGTTGCTTCAATGATTGGTTCCATCGTATGGAAAAATATGTCAAATTTCGCGGAGAATACTTCTAA
Protein
MELTRENSRAMIYYDFRSGLTQKQCVDRMISAFGDEAPSKTTIDCWFAEFQRGRVKLSDEPRQGRQKAAVTQENVDAVVSELRKENCNRRIILHHDNASSHTAHRTKEFLEQENIELLDHPPYSPDLSPNDFYTFPKIKNKLCGQRFSSPEEAVDAYKTAILETPTSEWNGCFNDWFHRMEKYVKFRGEYF

Summary

EMBL
KQ980031    KYN18156.1    GL888295    EGI62988.1    GECZ01012256    JAS57513.1    + More
GAKP01015435    JAC43517.1    GECL01002811    JAP03313.1    GBGD01001983    JAC86906.1    GBBI01001865    JAC16847.1    KX930998    APL98291.1    NIVC01001798    PAA63957.1    KQ982756    KYQ51169.1    NEVH01007794    PNF35638.1    NEVH01009765    PNF32944.1    NEVH01020936    PNF20612.1    NEVH01012098    PNF30316.1    NEVH01018377    PNF23576.1    HACA01033482    CDW50843.1    KQ981250    KYN44215.1    KYN44220.1    KQ981615    KQ981453    KQ981332    KYN39295.1    KYN41582.1    KYN42673.1    KQ981885    KYN33839.1    KYN33874.1    KQ981337    KYN42545.1    KQ981661    KYN38529.1    KQ981643    KYN38682.1    MTYJ01000064    OQV17200.1    NEVH01013196    PNF30090.1    KQ981733    KYN36550.1    NEVH01000595    PNF43644.1    NEVH01007822    PNF35315.1    KQ982126    KYQ59860.1    GL888247    EGI63876.1    KQ981102    KYN09459.1    KQ981832    KYN35065.1    NEVH01021198    NEVH01008206    NEVH01006571    PNF19983.1    PNF34678.1    PNF37800.1    NEVH01024950    NEVH01022640    NEVH01006723    PNF16374.1    PNF18508.1    PNF36951.1    NEVH01006721    PNF37233.1    KQ981816    KYN35367.1    KQ981948    KYN32581.1    KQ979265    KYN22061.1    AM906154    CAP20068.1    KQ981975    KYN31622.1    KQ981430    KYN41745.1    NEVH01013555    PNF28730.1    KQ982975    KYQ48580.1    NEVH01025167    PNF15526.1    NEVH01021944    PNF19091.1    AM906142    AM906144    CAP20056.1    AM906145    CAP20059.1    KK107532    EZA49234.1    AM906136    CAP20050.1    NEVH01009384    PNF33206.1    NEVH01014841    PNF27477.1    GL888401    EGI61662.1    NEVH01025655    PNF15130.1    GL888437    EGI60875.1    NEVH01010477    PNF32541.1    NEVH01017540    PNF24058.1    GBBI01001742    JAC16970.1    NEVH01012087    PNF30678.1    GBBI01001812    JAC16900.1    NEVH01020329    PNF21909.1    NEVH01008216    PNF34501.1    NEVH01001337    PNF43072.1    NEVH01026109    PNF14609.1    GL888527    EGI59805.1    NEVH01019969    PNF22065.1    NEVH01011986    PNF31047.1   
Pfam
PF17906   HTH_48        + More
PF13358   DDE_3
PF01359   Transposase_1
Interpro
IPR041426   Mos1_HTH        + More
IPR038717   Tc1-like_DDE_dom       
IPR001888   Transposase_1       
IPR032675   LRR_dom_sf       
Gene 3D
PDB
3K9K     E-value=1.85283e-12,     Score=171

Ontologies

Topology

Length:
191
Number of predicted TMHs:
0
Exp number of AAs in TMHs:
0
Exp number, first 60 AAs:
0
Total prob of N-in:
0.23018
outside
1  -  191
 
 

Population Genetic Test Statistics

Pi
28.060383
Theta
63.66158
Tajima's D
1.049555
CLR
65.071432
CSRT
0.67681615919204
Interpretation
Uncertain

Multiple alignment of Orthologues

 
 

Gene Tree

 
 
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