Silkworm Genome Informatics Database

Gene

KWMTBOMO08903

Annotation

endonuclease_and_reverse_transcriptase-like_protein_[Bombyx_mori]

Location

Bomo_Chr15(-):7689056-7692199 View in EpiBrowser

Location in the cell

Mitochondrial Reliability : 1.229 Nuclear Reliability : 1.747

CDS

ATGAAGTCGACAAAGAAAAAGAAAAGGGTTTCACAGGCGGTTCCCCATTCCACATTTAATGTGGATTTCAGCAATGTCAGGGGCCTACATAGCAACCTTGACGCCGTACACCACCACCTTGAGACGGCGCAGCCTGCCCTGCTTTTTTTAACGGAGACACAGATATCTGCTCCGGATGATACCTCATACCTTGAATACCCCGGCTACGTATTGGAGCACAACTTCCTGCGTAAAGCCGGGGTGTGCGTATTCGTCCGGGCTGATGTCTGTTGTCGCCGTCTTCGGGGCCTCGAACAACGGGACCTGTCCCTCTTGTGGCTGCGCGTAGATCACGGGGGCCGTAGCCGAATCTACGCGTGCCTGTACAGGTCCCACAGCAGTGATGCAGGTTCAGCTCTGTTTGAGCATGTGCAAGAGGAGACTAACCGCGTGCTTGAGCAGTACCCATCTGCGGAGGTGGTGGTTCTTGGAGACTTTAACGCTCACCACCAAGAGTGGTTGGGATCCAGAACCACTGACCTCCCGGGTCGGACTGCCTACGATTTCGCCTTGGCCTACGGCTTCTCCCAGCTGGTGACACAGCCCACCCGTGTCCCAGATATCGAGGGGCACGAGCCTTCTTTGTTGGACCTTCTGCTGACCACAGATCCGGCCGGATACAGTGTGGTGGTCGACGCTCGCTTGGATCGTCTGATCACTGCCTTATTCGTGCTGCCGTACCACTCTCTCGTCCTGATCGTCGAACGACGACCGGGTATCGAAGAGTTTGGCGGTATATGTCAGCAGATTGGGATGGATTGCGGGATGGAATTGTTTATTCCCTCCTCTAAAGTGCCCGTTGGGGGTCGCAGCAGACCCTGGTATAACAATGCCAGCAGGGATGCTGCACACCTCAAGCGGTCCGCATACGTGACATGGGATAATGCCAGGAGACGTCGGGATCCTAACATCTCAGGGGAAAGGCGGAAATATAACGCCGCTTCCAGGTCCTACAAGAAGGTAATTGCCAAGGCGAAGTCGGAGCACGTGGCTAGAGTTGGCGAGCGATTGAAGAGCTATCCCTCTGGGAGCCGTGCTTTTTGGTCGCTCGCCAAAGCTGCAGAAGGAAACTTTTGCAGGTCAAGTCTCCCACCACTGCGCAAGTCCGATGACAATCTGGCCCACAGCGCGAAAGAGAAGGCTGACCTTCTGGTCAAACTCTTCGCCTCGAACTCGACTGTGGACGACGGGGGTGCCACACCACCGAGCATCCCCCGGTGTGATAGCTCCCTGCCGGATATCTGCTTCACACAGTGTGCAGTCAGGCGGGAGCTCCGACTCCTGGACGTCCATAAGTCGAGTGGGCCAGACGGCATCCCCGCAGTGGTTTTGAAAACGTGCGCCCCTGAGCTGACACCTGCGCTAACGCGTTTGTATCGCCTCTCTTATTGCACTAACAGGGTTCCGTCTTCATGGAAGACCGCCCACGTCCACCCTATCCCCAAGAAGGGTGACCGGTCGGACCCATCGAGCTACAGGCCTATCGCGATAACTTCCTTGCTTTCCAAGGTGATGGAGCGAATAATAAATACACAACTCTTGAAGTATCTTGAAGATCGCCAGCTGATCAGTGACCGACAGTACGGTTTCCGTCACGGTCGCTCAGCTGGTGATCTTCTTGTATACCTTACTCACAGGTGGGCTGAAGCCTTGGAGAGCAAGGGCGAGGCTCTTGCTGTGAGCCTTGATATCGCGAAGGCCTTCGACAGGGTCTGGCATAGGGTACTTCTATCGAAGCTACCATCTTACGGAATCCCCGAGGGTCTCTGCAAGTGGATCGCTAGCTTTTTGGATGGGCGGAGCGTCACGGTCGTTGTAGACGGTGACTGTTCTGATACCATGACCATTAACGCTGGCGTTCCACAAGGTTCGGTGCTCTCCCCCACGCTTTTCATCCTGTATATCAATGACATGCTGTCTATTGATGGCATGCATTGCTATGCGGATGACAGCACGGGGGATGCGCGATATATCGGCCATCAGAGTCTTTCTCGGAGCGCGGTGCAAGAGAGACGATCAAAACTTGTGTCTGAAGTGGAGAACTCTCTGGGGCGAGTCTCCGAATGGGGTGAATTGAACTTGGTTCAATTCAACCCGATAAAGACACAAGTTTGCGCGTTCACTGCGAAGAAGGACCCCTTTGTCATGGCGCCGCAATTCCAAGGAGTATCCCTGCAACCTTCCGAGAGTATCGGGATACTTGGGGTCGACATTTCGAGCGATGTCCAGTTTCGGAGTCATTTGGAAGGCAAAGCCAAGTTGGCGTCCAAAATGCTGGGAGTCCTCAACAGAGCGAAGCGGTACTTCACGCCTGGACAAAGACTTTTGCTTTATAAAGCACAAGTCCGGCCTCGCATGGAGTACTGCTCCCATCTCTGGGCCGGGGCTCCCAAATACCAGCTTCTTCCATTTGACTCCATACAGAGGAGGGCCGTTCGGATTGTCGATAATCCCATTCTCTCGGATCGTTTCGAGCCTCTGGGTCTGCGGAGGGACTTCGGTTCCCTCTGTATTTTATACCATATGTTCCATGGGGAGTGCTCTGAGGAATTGTTCGAGATGATACCAGCATCTCGTTTTTACCATCGCACCGCCCGCCACCGGAGTAGAGTTCATCCATACTACCTGGAGCCGCTGCGGTCATCCACAGTGCGTTTCCAGAGATCTTTTTTGCCACGTACCATCCGGCTATGGAATGAGCTCCCCTCCACGGTGTTTCCCGAGCGCTATGACATGTCCTTCTTCAAACGAGGCTTGTGGAGAGTATTAAGCGGTAGGCAGCGACTTGGCTCTGCCCCTTGCATTGCTGAAGTCCATGGGCGACGGTAA

Protein

MKSTKKKKRVSQAVPHSTFNVDFSNVRGLHSNLDAVHHHLETAQPALLFLTETQISAPDDTSYLEYPGYVLEHNFLRKAGVCVFVRADVCCRRLRGLEQRDLSLLWLRVDHGGRSRIYACLYRSHSSDAGSALFEHVQEETNRVLEQYPSAEVVVLGDFNAHHQEWLGSRTTDLPGRTAYDFALAYGFSQLVTQPTRVPDIEGHEPSLLDLLLTTDPAGYSVVVDARLDRLITALFVLPYHSLVLIVERRPGIEEFGGICQQIGMDCGMELFIPSSKVPVGGRSRPWYNNASRDAAHLKRSAYVTWDNARRRRDPNISGERRKYNAASRSYKKVIAKAKSEHVARVGERLKSYPSGSRAFWSLAKAAEGNFCRSSLPPLRKSDDNLAHSAKEKADLLVKLFASNSTVDDGGATPPSIPRCDSSLPDICFTQCAVRRELRLLDVHKSSGPDGIPAVVLKTCAPELTPALTRLYRLSYCTNRVPSSWKTAHVHPIPKKGDRSDPSSYRPIAITSLLSKVMERIINTQLLKYLEDRQLISDRQYGFRHGRSAGDLLVYLTHRWAEALESKGEALAVSLDIAKAFDRVWHRVLLSKLPSYGIPEGLCKWIASFLDGRSVTVVVDGDCSDTMTINAGVPQGSVLSPTLFILYINDMLSIDGMHCYADDSTGDARYIGHQSLSRSAVQERRSKLVSEVENSLGRVSEWGELNLVQFNPIKTQVCAFTAKKDPFVMAPQFQGVSLQPSESIGILGVDISSDVQFRSHLEGKAKLASKMLGVLNRAKRYFTPGQRLLLYKAQVRPRMEYCSHLWAGAPKYQLLPFDSIQRRAVRIVDNPILSDRFEPLGLRRDFGSLCILYHMFHGECSEELFEMIPASRFYHRTARHRSRVHPYYLEPLRSSTVRFQRSFLPRTIRLWNELPSTVFPERYDMSFFKRGLWRVLSGRQRLGSAPCIAEVHGRR

Uniprot

Q6UV17 A0A437B259 A0A3S2M451 A0A3S2NTH0 A0A3S2LQP1 A0A437BF96 + More
A0A3D5S1K1 A0A437BQ08 T2M4I6 A0A0P4VVV8 A0A0P4VPK5 A0A2H9T4U7 W4YEI4

Pubmed

30148503 24065732 29150518

EMBL

AY359886 AAQ57129.1 RSAL01000210 RVE44225.1 RSAL01000041 RVE50934.1 + More
RSAL01000090 RVE48098.1 RSAL01000422 RVE41792.1 RSAL01000072 RVE49051.1 DPOC01000269 HCX22453.1 RSAL01000021 RVE52490.1 HAAD01000593 CDG66825.1 GDRN01111277 JAI56804.1 GDRN01111278 JAI56803.1 NSIT01000225 PJE78229.1 AAGJ04103823

Proteomes

UP000283053 UP000007110

PRIDE

Q6UV17

Pfam

PF00078   RVT_1        + More
PF14529   Exo_endo_phos_2
PF00002   7tm_2
PF04939   RRS1
PF01585   G-patch
PF14306   PUA_2
PF01747   ATP-sulfurylase
PF02460   Patched

Interpro

IPR000477   RT_dom        + More
IPR005135   Endo/exonuclease/phosphatase
IPR036691   Endo/exonu/phosph_ase_sf
IPR028082   Peripla_BP_I
IPR000832   GPCR_2_secretin-like
IPR017981   GPCR_2-like
IPR007023   Ribosom_reg
IPR012677   Nucleotide-bd_a/b_plait_sf
IPR000504   RRM_dom
IPR034653   SPF45_RRM
IPR003954   RRM_dom_euk
IPR000467   G_patch_dom
IPR040052   RBM17
IPR035979   RBD_domain_sf
IPR027417   P-loop_NTPase
IPR002891   APS_kinase
IPR002650   Sulphate_adenylyltransferase
IPR025980   ATP-Sase_PUA-like_dom
IPR014729   Rossmann-like_a/b/a_fold
IPR024951   Sulfurylase_cat_dom
IPR015947   PUA-like_sf
IPR030223   Dispatched
IPR003392   Ptc/Disp
IPR000731   SSD
IPR019786   Zinc_finger_PHD-type_CS
IPR011011   Znf_FYVE_PHD
IPR019787   Znf_PHD-finger
IPR013083   Znf_RING/FYVE/PHD

SUPFAM

SSF56219   SSF56219        + More
SSF53822   SSF53822
SSF54928   SSF54928
SSF52540   SSF52540
SSF88697   SSF88697
SSF57903   SSF57903

Gene 3D

3.60.10.10 3.30.70.330 3.40.50.620 3.30.40.10

CDD

cd12647  RRM_UHM_SPF45
cd00517  ATPS
cd02027  APSK

ProteinModelPortal

Q6UV17 A0A437B259 A0A3S2M451 A0A3S2NTH0 A0A3S2LQP1 A0A437BF96 + More
A0A3D5S1K1 A0A437BQ08 T2M4I6 A0A0P4VVV8 A0A0P4VPK5 A0A2H9T4U7 W4YEI4

PDB

6AR3 E-value=5.13712e-06, Score=124

KEGG

105842661 no KO assigned | (RefSeq) uncharacterized LOC105842661

GO

GO:0003964 GO:0004519 GO:0016021 GO:0003723 GO:0046872

PANTHER

PTHR17602 PTHR13288 PTHR45951:SF3

Length:

955

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.33251

Exp number, first 60 AAs:

0.00042

Total prob of N-in:

0.01790

outside

1 - 955

Pi

41.778802

Theta

35.111851

Tajima's D

0

CLR

351.062572

CSRT

0.368881555922204

Interpretation

Uncertain

Sequence

Summary

Ontologies

Topology

Population Genetic Test Statistics

Multiple alignment of Orthologues

Gene Tree