Gene

KWMTBOMO08902  Validated by peptides from experiments

Pre Gene Modal

BGIBMGA007712

Annotation

Rab7_[Bombyx_mori]

Location

Bomo_Chr15(+):7675140-7675909      View in EpiBrowser

Location in the cell

Cytoplasmic   Reliability : 1.252 Nuclear   Reliability : 1.012

CDS

ATGTCTTCACGGAAAAAGCTCCTGCTAAAGGTAATTATCCTGGGTGACAGCGGTGTTGGAAAAACATCTCTGATGAATCAGTTTGTCAACAAAAAATTTTCCAACCAGTACAAGGCGACAATAGGTGCAGATTTTCTCACAAAAGAAGTAATCGTTGACGATAGAATCGTTACGATGCAAATATGGGATACTGCTGGCCAAGAACGGTTCCAATCGCTTGGAGTAGCTTTCTATCGTGGGGCGGATTGCTGCGTATTAGTTTTTGACGTAACTGCCCCCAACACGTTTAAGTCCTTAGAGAGTTGGAGAGACGAATTCCTGATACAGGCATCACCTCGTGACCCTGATAATTTCCCCTTCGTAATATTGGGAAACAAAGTCGACTTGGATAATCGTGCCGTTTCTGTCAAACGTGGTCAACAATGGTGCCAGAGCAAGAACGACATCCCGTATTTTGAGACAAGTGCCAAAGAAGCTGTCAATGTAGAGCTAGCTTTTCAAACAATAGCACGCAACGCATTGGCACAAGAAACCGAAGCTGAACTCTACAATGAATTCCCCGACCAAATCAAACTGAATGCTAATGACAATGGAAGAAACAGGGACGGTGACAACTGTGCTTGCTAG

Protein

MSSRKKLLLKVIILGDSGVGKTSLMNQFVNKKFSNQYKATIGADFLTKEVIVDDRIVTMQIWDTAGQERFQSLGVAFYRGADCCVLVFDVTAPNTFKSLESWRDEFLIQASPRDPDNFPFVILGNKVDLDNRAVSVKRGQQWCQSKNDIPYFETSAKEAVNVELAFQTIARNALAQETEAELYNEFPDQIKLNANDNGRNRDGDNCAC

Uniprot

Q1HQ77   A0A0L7LFE6   A0A2H1VJX1   S4P612   A0A212F3Y1   A0A2A4K037   + More
A0A0N0PEJ0   A0A194PQ44   U3MXC0   D2DW56   Q00P14   I1SV77   A0A0A0VB95   B0I567   A0A067QDV7   A0A444TIW8   A0A0P4WFP1   A0A232F637   K7IQZ8   T1D4U9   B0WPJ4   A0A182GVN7   A0A411G6I5   A0A1Q3FFT7   A0A224XSY8   A0A0V0G754   A0A069DQP0   A0A023FAJ8   A0A0C9RTE0   Q17F70   H9D2I4   T1HW94   A0A151X4W5   F4WRH1   A1YSB2   A0A2I9LPI6   E2BLX8   A0A0J7L9F0   E2A0E7   E9IRX8   A0A151IU23   A0A151IFU3   A0A195BE80   A0A195FJQ1   A0A158NR86   R4WDM7   A0A026W5Q5   A0A165VFV3   R7V5G0   A0A182VZB9   A0A2I4BBZ5   A0A1S3H716   U5EZE2   A0A3Q3K5A5   Q6EIK7   A7RT62   A0A182MDD4   A0A182NS45   A0A182R623   A0A087TYX5   V9KR15   A0A401RIF9   C3Z904   G3N6W8   H2TL09   Q4RXU9   A0A154P2A3   A0A3Q2NYM9   A0A1A7WF61   A0A0B4UCH1   A0A023GIG2   A0A023FJ91   A0A1E1X957   A0A2H5AC62   A0A3B1JRC0   Q7T2C6   W5NB94   A0A146N476   A0A3P9HE46   A0A3Q3N726   A0A0P7U322   A0A3B5KER0   A0A3B4XHC5   A0A3Q1EBB1   A0A3B4GVP1   A0A3B5BCE7   A0A3Q2ZHM9   E6ZFW1   A0A0F8BIH8   A0A3Q2WNM9   W8PGB8   A0A3Q3NCE1   G3P576   A0A3Q4I4G1   A0A3Q1IWC9   A0A3Q3ILK6   H3D0L3   I3KWY1   A0A3Q3E5K8   A0A3P8QFG8  

Pubmed

19121390    26227816    23622113    22118469    26354079    21347841    + More
17041224    24845553    28648823    20075255    24330624    26483478    26334808    25474469    17510324    21719571    17707875    29248469    20798317    21282665    21347285    23691247    24508170    30249741    23254933    12914791    17615350    24402279    30297745    18563158    21551351    15496914    25542378    28503490    29229676    25329095    23594743    17554307    25835551    24513270    25186727   

EMBL

BABH01002708    DQ443175    ABF51264.1    JTDY01001302    KOB74263.1    MK060105    + More
ODYU01002957    AZG02839.1    SOQ41117.1    GAIX01007061    JAA85499.1    AGBW02010474    OWR48446.1    NWSH01000302    PCG77607.1    KQ459937    KPJ19213.1    KQ459602    KPI93255.1    KF199870    AGW22131.1    FJ811529    ACT65737.1    DQ231062    HQ128578    ABB70064.1    ADM66002.1    JF742050    AEF33797.1    KM347964    AIW62176.1    AB379643    BAG06944.1    KK853996    KDQ65243.1    SAUD01002378    RXG69915.1    GDRN01030724    JAI67540.1    NNAY01000823    OXU26326.1    GALA01000818    JAA94034.1    DS232025    EDS32384.1    JXUM01019377    KQ560540    KXJ81943.1    MH365638    QBB01447.1    GFDL01008640    JAV26405.1    GFTR01003488    JAW12938.1    GECL01002866    JAP03258.1    GBGD01002942    JAC85947.1    GBBI01000191    GEMB01003022    JAC18521.1    JAS00182.1    GBYB01012009    GBYB01012010    JAG81776.1    JAG81777.1    CH477273    EAT45215.1    JQ581679    AFD54570.1    ACPB03013647    KQ982540    KYQ55421.1    GL888285    EGI63242.1    EF127648    ABL74414.1    GFWZ01000312    MBW20302.1    GL449059    EFN83308.1    LBMM01000197    KMR04517.1    GL435586    EFN73084.1    GL765283    EFZ16723.1    KQ980970    KYN10924.1    KQ977771    KYN00011.1    KQ976504    KYM82891.1    KQ981522    KYN40591.1    ADTU01023823    AK417669    BAN20884.1    KK107390    QOIP01000007    EZA51407.1    RLU20259.1    RLU20806.1    KT984797    AMZ00349.1    AMQN01005688    KB296584    ELU11591.1    GANO01000957    JAB58914.1    AY321151    AAQ23388.1    DS469536    EDO45332.1    AXCM01017577    KK117377    KFM70314.1    JW868678    AFP01196.1    BEZZ01001360    GCC17914.1    GG666598    EEN50916.1    CAAE01014979    CAG06783.1    KQ434804    KZC06069.1    HADW01003033    HADX01015946    SBP04433.1    KP216758    AJC97115.1    GBBM01002600    JAC32818.1    GBBK01003759    JAC20723.1    GFAC01003396    JAT95792.1    MF598474    AUG68890.1    BX323086    CR854846    BC054602    BC155202    AAH54602.1    AAI55203.1    AHAT01014731    GCES01159713    JAQ26609.1    JARO02009755    KPP61294.1    FQ310506    CBN81061.1    KQ042855    KKF09413.1    KF987077    AHL29951.1    AERX01008647   

Proteomes

UP000005204    UP000037510    UP000007151    UP000218220    UP000053240    UP000053268    + More
UP000027135    UP000288706    UP000215335    UP000002358    UP000002320    UP000069940    UP000249989    UP000008820    UP000015103    UP000075809    UP000007755    UP000008237    UP000036403    UP000000311    UP000078492    UP000078542    UP000078540    UP000078541    UP000005205    UP000053097    UP000279307    UP000014760    UP000075920    UP000192220    UP000085678    UP000261600    UP000001593    UP000075883    UP000075884    UP000075900    UP000054359    UP000287033    UP000001554    UP000007635    UP000005226    UP000007303    UP000076502    UP000265000    UP000018467    UP000000437    UP000018468    UP000265200    UP000261640    UP000034805    UP000192224    UP000261360    UP000257200    UP000261460    UP000261400    UP000264820    UP000264840    UP000261580    UP000265040    UP000005207    UP000261660    UP000265100   

PRIDE

Q1HQ77    I3KWY1   

Pfam

PF00071   Ras

Interpro

IPR027417   P-loop_NTPase        + More
IPR005225   Small_GTP-bd_dom       
IPR001806   Small_GTPase       

SUPFAM

SSF52540   SSF52540       

ProteinModelPortal

Q1HQ77   A0A0L7LFE6   A0A2H1VJX1   S4P612   A0A212F3Y1   A0A2A4K037   + More
A0A0N0PEJ0   A0A194PQ44   U3MXC0   D2DW56   Q00P14   I1SV77   A0A0A0VB95   B0I567   A0A067QDV7   A0A444TIW8   A0A0P4WFP1   A0A232F637   K7IQZ8   T1D4U9   B0WPJ4   A0A182GVN7   A0A411G6I5   A0A1Q3FFT7   A0A224XSY8   A0A0V0G754   A0A069DQP0   A0A023FAJ8   A0A0C9RTE0   Q17F70   H9D2I4   T1HW94   A0A151X4W5   F4WRH1   A1YSB2   A0A2I9LPI6   E2BLX8   A0A0J7L9F0   E2A0E7   E9IRX8   A0A151IU23   A0A151IFU3   A0A195BE80   A0A195FJQ1   A0A158NR86   R4WDM7   A0A026W5Q5   A0A165VFV3   R7V5G0   A0A182VZB9   A0A2I4BBZ5   A0A1S3H716   U5EZE2   A0A3Q3K5A5   Q6EIK7   A7RT62   A0A182MDD4   A0A182NS45   A0A182R623   A0A087TYX5   V9KR15   A0A401RIF9   C3Z904   G3N6W8   H2TL09   Q4RXU9   A0A154P2A3   A0A3Q2NYM9   A0A1A7WF61   A0A0B4UCH1   A0A023GIG2   A0A023FJ91   A0A1E1X957   A0A2H5AC62   A0A3B1JRC0   Q7T2C6   W5NB94   A0A146N476   A0A3P9HE46   A0A3Q3N726   A0A0P7U322   A0A3B5KER0   A0A3B4XHC5   A0A3Q1EBB1   A0A3B4GVP1   A0A3B5BCE7   A0A3Q2ZHM9   E6ZFW1   A0A0F8BIH8   A0A3Q2WNM9   W8PGB8   A0A3Q3NCE1   G3P576   A0A3Q4I4G1   A0A3Q1IWC9   A0A3Q3ILK6   H3D0L3   I3KWY1   A0A3Q3E5K8   A0A3P8QFG8  

PDB

1VG8     E-value=3.76982e-96,     Score=893

KEGG

732902    K07897 Ras-related protein Rab-7A | (RefSeq) Rab7; Rab7 protein

PATHWAY

04137    Mitophagy - animal - Bombyx mori (domestic silkworm)
04140    Autophagy - animal - Bombyx mori (domestic silkworm)
04144    Endocytosis - Bombyx mori (domestic silkworm)
04145    Phagosome - Bombyx mori (domestic silkworm)

GO

GO:0003924   GO:0005525   GO:0016021   GO:0090385   GO:0045335   GO:0032482   GO:0005764   GO:0008333   GO:0005770   GO:0005774   GO:0006886   GO:0016197   GO:0007264   GO:0005524   GO:0003723   GO:0016020   GO:0016817   GO:0008270   GO:0043565   GO:0016876   GO:0043039  

Length:

208

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.34749

Exp number, first 60 AAs:

0.33875

Total prob of N-in:

0.10829

outside

1  -  208

 

 

Pi

234.217834

Theta

204.887471

Tajima's D

0.412666

CLR

123.876556

CSRT

0.484725763711814

Interpretation

Uncertain