SGID Silkworm Genome Informatics Database
Gene
KWMTBOMO08887
Annotation
reverse_transcriptase_[Bombyx_mori]
Location in the cell
Mitochondrial   Reliability : 1.804 Nuclear   Reliability : 1.381
 

Sequence

CDS
ATGAAAGAGTTGCTGGCCGATGCACTGCAAGAGCAGTGCACCACCAGCACTCAATACGCGGACCCCGAACACACCGAGGCAGTCGACAGGGAGGTCGAGCGCAGAGCTTCCCTGCCACCCTCGGACGCGTTACCCCCCATTACCTCTGACGAAGTTGGAGAAGTAATAGATAACCTTCAACCTAAGAAGGCACCCGGCTCCGACGGCATCCGCAACCGCGCGTTAAAACTCTTACCAGTCCAACTGATAACAATGTTGGCCACCATCTTAAATGCCGCTATGACGCACTGCATCTTTCCGGCGGTATGGAAAGAAGCGGACGTTATCGGTATACACAAGCCGGGCAAACCGAATAATGAAACCGCTAGTTACCGACCGATTAGTCTCCTCCCAGCGATAGGCAAAATTTACGAACGGCTCCTTCGGAAACGCCTCTGGGACTTCGTTACCGCGAATAAAATTCTAATAGACGAGCAGTTTGGATTCCGCGCCAAACACTCGTGCGTACAACAAGTGCACCGCCTCACGGAGCACATCCTAATAGGGCTAAATAGGCGTAAACAAATCCCGACCGGCGCCCTCTTCTTCGATGTAGCGAAGGCGTTCGACAAAGTCTGGCACAACGGTTTGATCTACAAACTATACAACATGGGAGTGCCAGACAGACTCGTGCTCATCATACGAGACTTCTTGTCGAACCGTTCGTTTCGATATCGAGTAGAGGGAACTCGTTCTCGTCCCCGTCATCTGACTGCCGGAGTCCCGCAAGGCTCCGCACTCTCCCCGTTACTATTTAGTTTGTATATCAACGATATACCCCGGTCTCCGGAGACCCATCTAGCGCTCTTCGCCGATGACACGGCTATCTACTACTCGTGTAGGAAGATGTCGTTGCTTCATCGGCGACTCCAGACCGCAGTAACCACCATGGGACAGTGGTTCCGGAAGTGGCGAATAGACATTAACCCCACGAAAAGCACAGCGGTGCTATTCAAAAGGGGTCGCCCTCCGAATACCACTTCGAGCACCCCACTCCCCAATAGGCGCGTAAACACCTCCGCCGTTAGCCCCATCACTCTCTTTGACCAGCCCATACCGTGGGCCCCGAAGGTCAAATACCTAGGCGTCACCCTCGACAGAGGGATGGCATTCCGTCCCCACGTAAAAACGGTTATACAATCCCGATTCTGCAGGATAGCCGTCGGAGCACCATGGTTCCAGAGGAACGTGGACCTCCACGATGACCTGGAGCTCGACCCCGTCAGTAAGTATCTACAGTCGGCATCGCTGCGCCACTTTGAGAAGGCGGCACGACATGAGAACCCTCTTGTCGTGGCCGCCGGAAACTACATACCCGATCCTGTAGACCGTTTGCTTTTTCAATAG
Protein
MKELLADALQEQCTTSTQYADPEHTEAVDREVERRASLPPSDALPPITSDEVGEVIDNLQPKKAPGSDGIRNRALKLLPVQLITMLATILNAAMTHCIFPAVWKEADVIGIHKPGKPNNETASYRPISLLPAIGKIYERLLRKRLWDFVTANKILIDEQFGFRAKHSCVQQVHRLTEHILIGLNRRKQIPTGALFFDVAKAFDKVWHNGLIYKLYNMGVPDRLVLIIRDFLSNRSFRYRVEGTRSRPRHLTAGVPQGSALSPLLFSLYINDIPRSPETHLALFADDTAIYYSCRKMSLLHRRLQTAVTTMGQWFRKWRIDINPTKSTAVLFKRGRPPNTTSSTPLPNRRVNTSAVSPITLFDQPIPWAPKVKYLGVTLDRGMAFRPHVKTVIQSRFCRIAVGAPWFQRNVDLHDDLELDPVSKYLQSASLRHFEKAARHENPLVVAAGNYIPDPVDRLLFQ

Summary

EMBL
AB018558    BAA76304.1    AB055391    BAB21761.1    U07847    AAA17752.1    + More
KQ459265    KPJ02064.1    AF081103    AAC72921.1    KQ459259    KPJ02068.1    GEZM01008457    JAV94772.1    KQ973342    KXZ75569.1    KQ971729    KYB24751.1    GGMR01019198    MBY31817.1    GALX01005359    JAB63107.1    ABLF02014862    ABLF02014866    ABLF02061908    KQ973412    EFA12510.2    ABLF02029306    ABLF02029314    ABLF02060138    GALX01005299    JAB63167.1    KK117880    KFM71667.1    ABLF02003961    ABLF02059872    KQ973073    KXZ75680.1    GGMS01008766    MBY77969.1    ABLF02008933    GGMS01000737    MBY69940.1    KL813758    KFM83187.1    GBBI01004395    JAC14317.1    ABLF02016634    GGMS01017914    MBY87117.1    ABLF02042518    ABLF02057746    GGMR01004661    MBY17280.1    ABLF02036316    ABLF02036319    ABLF02048663    ABLF02066977    GGMS01012005    MBY81208.1    NEVH01023962    PNF17612.1    NEVH01003017    PNF40781.1    NEVH01007443    PNF35684.1    ABLF02033757    ABLF02021177    ABLF02027367    ABLF02066338    NEVH01018383    PNF23463.1    NEVH01021586    NEVH01006600    NEVH01002584    PNF19589.1    PNF37419.1    PNF41868.1    NEVH01020071    PNF21969.1    NEVH01019080    PNF22876.1    NEVH01010546    PNF32261.1    ABLF02034467    GFXV01007093    MBW18898.1    GGMS01006359    MBY75562.1    NEVH01001355    PNF42855.1    NEVH01023961    PNF17613.1    GBBI01004571    JAC14141.1    ABLF02040650    ABLF02040651    ABLF02056776    NEVH01005938    PNF38077.1    NEVH01000280    PNF43672.1    GGMR01013409    MBY26028.1    NEVH01002716    PNF41415.1    NEVH01007838    PNF34986.1    GFTR01008038    JAW08388.1    GGMS01017365    MBY86568.1    ABLF02040174    ABLF02040183    ABLF02055266    NEVH01006754    PNF36554.1    NEVH01014858    PNF27387.1    GAHY01000238    JAA77272.1    NEVH01019964    PNF22161.1    ABLF02023911    NEVH01005277    PNF39135.1    GGMR01016114    MBY28733.1    GFTR01008256    JAW08170.1    NEVH01019376    PNF22596.1    NEVH01015305    NEVH01006671    PNF27154.1    PNF37357.1    GGMR01018716    MBY31335.1    NEVH01017559    PNF23833.1    NEVH01011985    PNF31054.1    NEVH01021205    PNF19912.1    NEVH01009134    PNF33528.1    NEVH01027074    PNF13841.1    ABLF02055645    NEVH01026154    PNF14491.1    GGMS01004685    MBY73888.1    KK115908    KFM66338.1    GBYB01008290    JAG78057.1    ABLF02008463    ABLF02028535    ABLF02028545    GGMR01000676    MBY13295.1    GGMR01003407    MBY16026.1    ABLF02008605    ABLF02008608    ABLF02008609    ABLF02008610    ABLF02017023    GFTR01008251    JAW08175.1    GEZM01038405    JAV81653.1    NEVH01017470    PNF24199.1    GBHO01016303    JAG27301.1    LBMM01010106    KMQ87671.1   
Pfam
PF14529   Exo_endo_phos_2        + More
PF00078   RVT_1
PF07530   PRE_C2HC
PF03372   Exo_endo_phos
PF10551   MULE
PF13358   DDE_3
Interpro
IPR000477   RT_dom        + More
IPR005135   Endo/exonuclease/phosphatase       
IPR036691   Endo/exonu/phosph_ase_sf       
IPR006579   Pre_C2HC_dom       
IPR018289   MULE_transposase_dom       
IPR038717   Tc1-like_DDE_dom       
IPR001878   Znf_CCHC       
IPR013083   Znf_RING/FYVE/PHD       
IPR036875   Znf_CCHC_sf       
SUPFAM
SSF56219   SSF56219        + More
SSF57756   SSF57756       
Gene 3D
PDB
6AR3     E-value=0.00796389,     Score=93

Ontologies

Topology

Length:
461
Number of predicted TMHs:
0
Exp number of AAs in TMHs:
2.07919000000001
Exp number, first 60 AAs:
0
Total prob of N-in:
0.08324
outside
1  -  461
 
 

Population Genetic Test Statistics

Pi
220.269125
Theta
56.016575
Tajima's D
5.609151
CLR
1.10851
CSRT
0.999950002499875
Interpretation
Uncertain

Multiple alignment of Orthologues

 
 

Gene Tree

 
 
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