Gene

KWMTBOMO08885

Annotation

reverse_transcriptase_[Bombyx_mori]

Location

Bomo_Chr15(+):7269967-7271418      View in EpiBrowser

Location in the cell

Mitochondrial   Reliability : 1.896 Nuclear   Reliability : 1.34 PlasmaMembrane   Reliability : 1.346

CDS

ATGCACTATTTCAAACCCATTCCGACAGGAGCCCTCTTCTTCGATATAGCGAAGGCGTTCGATAAAGTCTGGCACAACGGTTTGATATACAAACTGTATAACATGGGAGTGCCAGACAGGCTCGTGCTCATCATACGAGACTACTTGTCGAACCGTTCGTTCCGATATCGAGTCGAGGGAACGCGTTCCCGGCCCCGTCACGTCACAGCCGGAGTCCCGCAAGGCTCCGCCCTCTCCCCGTTACTATTCAGTTTGTATATCAACGATATACCCCGGTCTCCGGAGACCCATCTGGCGCTCTTCGCCGATGACACCGCCATCTACTACTCGTGTAGGAAGAAGGCGTTGCTTCATCGACGACTTCAGACCGCAGCTACCACCATGGGACAGTGGTTCCGGAAGTGGCGCATCGACATTAACCCCACGAAAAGCACAGCGGTGCTCTTCAAAAGGGGTCGCCCTCCGAACACCACGCTGAGCATCCCTCTCCCGACTAGGCGCGTCAATAACCCCGCCCCCGCCGTTCGCCCAATCACGATGTTCGACCAGCCCATACCGTGGGCCCCGAAGGTCAAATATTTAGGCGTCACCCTCGACAGTAGGATGACATTCCGCCCCCACATCAAGACGGTACGCGACCGTGCCGCCTTCATTCTAGGACGTCTCTACCCGATGATATGTAGGCGAAGTAAAATGTCCCTTAGAAATAAGGTGACACTCTACAAAACTTGCATACGCCCCGTCATGACCTATGCAAGTGTAGTGTTCGCTCACGCGGCCCGCATACACTTAAAATCCTTTCAAATTATTCAATCCCGTTTTTGCAGGATAGCCGTCGGAGCCCCGTGGTTCGTCAGGAACGTCGACCTCCATGACGACCTGGACTTAGAGTCCATCAGTAAGTATCTGCAGTCGGCGTCCATGCGCCACTTCGATAAAGCGGCACGACACGAGAACCCTCTCATCGTGGCCGCCGGTAACTACATTCCCGATCCTGCGGACAGAATGGAAAGCAGTCGACGTCGCCCTAAACACGTCATCTCGGATCCTCCTGATCCACTAACGGTGCTTTTAGGTACTTCAAGCACCGGTCACCGTTCTCGTCGAACCCGTCGCTTGCGACGAAGGGCTCGACGAGTAAATTAA

Protein

MHYFKPIPTGALFFDIAKAFDKVWHNGLIYKLYNMGVPDRLVLIIRDYLSNRSFRYRVEGTRSRPRHVTAGVPQGSALSPLLFSLYINDIPRSPETHLALFADDTAIYYSCRKKALLHRRLQTAATTMGQWFRKWRIDINPTKSTAVLFKRGRPPNTTLSIPLPTRRVNNPAPAVRPITMFDQPIPWAPKVKYLGVTLDSRMTFRPHIKTVRDRAAFILGRLYPMICRRSKMSLRNKVTLYKTCIRPVMTYASVVFAHAARIHLKSFQIIQSRFCRIAVGAPWFVRNVDLHDDLDLESISKYLQSASMRHFDKAARHENPLIVAAGNYIPDPADRMESSRRRPKHVISDPPDPLTVLLGTSSTGHRSRRTRRLRRRARRVN

Uniprot

Q9XXW0   K9N5J5   Q93137   Q9BPQ0   A0A194Q1H8   A0A0N0PA09   + More
A0A0N1PFV1   O96544   O96546   A0A1Y1NA23   V5I850   V5GNF3   A0A139WA11   A0A2S2PR14   A0A2S2Q823   V5GNJ2   X1WMU5   X1WLB2   J9KKL3   A0A139W8G9   X1WXU3   X1WWC4   A0A087T1W0   A0A224XF24   A0A2J7QQP1   A0A087U2S8   A0A023EZE6   U4UTK6   A0A2J7PF43   A0A2J7RRU8   X1WL89   A0A2J7RB54   A0A2J7RPU2   A0A2J7QUJ9   A0A1B6LG18   A0A2J7RIW7   A0A2J7RS77   A0A2J7Q059   A0A2J7R4B7   A0A2J7PMP6   A0A2J7RM10   A0A2J7Q4F7   A0A3N5Z7I3   J9KC83   A0A2J7R2E1   A0A2J7Q0Q6   A0A2J7R6U1   X1X928   A0A2J7QFL0   X1X5Q5   A0A2J7QR37   A0A2J7RKP3   A0A1Y1MAT4   A0A2J7PMP9   A0A2J7QY69   A0A2J7PBY3   A0A2S2NKN0   A0A2J7PDS9   A0A2J7Q6J2   A0A2J7Q1Y9   A0A2J7QEZ4   A0A2J7Q5G9   A0A069DZL8   A0A023EYS8   J9KCZ4   Q07995   A0A0L0CBP5   A0A352X8G4   A0A2S2PH29   A0A087TPE4   A0A2J7QAT1   A0A2J7PU96   Q8T9X4   X1WNI2   Q8I7P8   A0A2J7Q2R1   A0A2J7RL12   A0A2S2QZC0   A0A2J7Q627   A0A2J7RS81   A0A2S2PPK8   A0A2J7R8R8   A0A2S2RAN7   A0A1Y1M7E9   X1WSV5   A0A2J7PDM0   A0A087T2T6   A0A087TG24   A0A0J7MT32   A0A2M4BD67   J9LR29   X1XFE3   A0A087TRT5   A0A1B6D7J6   A0A2M4BDV6   A0A2J7PVE7   A0A069DRZ5   A0A0A9Z4E6   A0A2H8TES1  

Pubmed

10333566    23652563    26354079    10380107    28004739    18362917    + More
19820115    25474469    23537049    30086797    26334808    8387152    26108605    30148503    25401762   

EMBL

AB018558    BAA76304.1    KC165845    AFY12622.1    U07847    AAA17752.1    + More
AB055391    BAB21761.1    KQ459580    KPI99178.1    KQ459259    KPJ02068.1    KQ459265    KPJ02064.1    AF081101    AAC72919.1    AF081103    AAC72921.1    GEZM01008457    JAV94772.1    GALX01005300    JAB63166.1    GALX01005359    JAB63107.1    KQ971729    KYB24751.1    GGMR01019198    MBY31817.1    GGMS01004685    MBY73888.1    GALX01005299    JAB63167.1    ABLF02014862    ABLF02014866    ABLF02061908    ABLF02042518    ABLF02057746    ABLF02029306    ABLF02029314    ABLF02060138    KQ973342    KXZ75569.1    ABLF02008933    ABLF02003961    ABLF02059872    KK113014    KFM59099.1    GFTR01008038    JAW08388.1    NEVH01012084    PNF30905.1    KK117880    KFM71667.1    GBBI01004571    JAC14141.1    KB632361    ERL93526.1    NEVH01026085    PNF14941.1    NEVH01000598    PNF43535.1    ABLF02019349    ABLF02041900    NEVH01005938    PNF38077.1    NEVH01001355    PNF42855.1    NEVH01010546    PNF32261.1    GEBQ01017345    JAT22632.1    NEVH01003017    PNF40781.1    NEVH01000280    PNF43672.1    NEVH01020071    PNF21969.1    NEVH01007443    PNF35684.1    NEVH01023962    PNF17612.1    NEVH01021586    NEVH01006600    NEVH01002584    PNF19589.1    PNF37419.1    PNF41868.1    NEVH01018383    PNF23463.1    RPOV01000134    RPJ78669.1    ABLF02033757    NEVH01007838    PNF34986.1    NEVH01019964    PNF22161.1    NEVH01006754    PNF36554.1    ABLF02066620    NEVH01014858    PNF27387.1    ABLF02041993    NEVH01011985    PNF31054.1    NEVH01002716    PNF41415.1    GEZM01039082    JAV81425.1    NEVH01023961    PNF17613.1    NEVH01009134    PNF33528.1    NEVH01027074    PNF13841.1    GGMR01004707    MBY17326.1    NEVH01026154    PNF14491.1    NEVH01017470    PNF24199.1    NEVH01019376    PNF22596.1    NEVH01015305    NEVH01006671    PNF27154.1    PNF37357.1    NEVH01017559    PNF23833.1    GBGD01000415    JAC88474.1    GBBI01004395    JAC14317.1    ABLF02008463    S59870    AAB26437.2    JRES01000644    KNC29657.1    DNOY01000259    HBE18313.1    GGMR01016114    MBY28733.1    KK116158    KFM66983.1    NEVH01016327    PNF25684.1    NEVH01021205    PNF19912.1    AF456125    AAL57609.1    ABLF02008153    ABLF02008462    ABLF02008464    AY180919    AAN87272.1    NEVH01019080    PNF22876.1    NEVH01002704    PNF41489.1    GGMS01013269    MBY82472.1    NEVH01017542    PNF24034.1    NEVH01000269    PNF43694.1    GGMR01018716    MBY31335.1    NEVH01006721    PNF37225.1    GGMS01017914    MBY87117.1    GEZM01038405    JAV81653.1    ABLF02016494    ABLF02066976    NEVH01026386    PNF14434.1    KK113137    KFM59425.1    KK115055    KFM64063.1    LBMM01018951    KMQ83660.1    GGFJ01001858    MBW50999.1    ABLF02025082    ABLF02039175    ABLF02041809    ABLF02029291    KK116445    KFM67824.1    GEDC01015644    JAS21654.1    GGFJ01001857    MBW50998.1    NEVH01020963    PNF20308.1    GBGD01002174    JAC86715.1    GBHO01041571    GBHO01005400    GBHO01005396    JAG02033.1    JAG38204.1    JAG38208.1    GFXV01000774    MBW12579.1   

Proteomes

UP000053268    UP000007266    UP000007819    UP000054359    UP000235965    UP000030742    + More
UP000037069    UP000036403   

PRIDE

Q9XXW0    K9N5J5    Q93137    Q9BPQ0    Q8T9X4    Q8I7P8    + More

Pfam

PF14529   Exo_endo_phos_2        + More
PF00078   RVT_1
PF03372   Exo_endo_phos
PF07530   PRE_C2HC
PF10551   MULE

Interpro

IPR000477   RT_dom        + More
IPR005135   Endo/exonuclease/phosphatase       
IPR036691   Endo/exonu/phosph_ase_sf       
IPR006579   Pre_C2HC_dom       
IPR018289   MULE_transposase_dom       
IPR036875   Znf_CCHC_sf       

SUPFAM

SSF56219   SSF56219        + More
SSF57756   SSF57756       

Gene 3D

3.60.10.10    

ProteinModelPortal

Q9XXW0   K9N5J5   Q93137   Q9BPQ0   A0A194Q1H8   A0A0N0PA09   + More
A0A0N1PFV1   O96544   O96546   A0A1Y1NA23   V5I850   V5GNF3   A0A139WA11   A0A2S2PR14   A0A2S2Q823   V5GNJ2   X1WMU5   X1WLB2   J9KKL3   A0A139W8G9   X1WXU3   X1WWC4   A0A087T1W0   A0A224XF24   A0A2J7QQP1   A0A087U2S8   A0A023EZE6   U4UTK6   A0A2J7PF43   A0A2J7RRU8   X1WL89   A0A2J7RB54   A0A2J7RPU2   A0A2J7QUJ9   A0A1B6LG18   A0A2J7RIW7   A0A2J7RS77   A0A2J7Q059   A0A2J7R4B7   A0A2J7PMP6   A0A2J7RM10   A0A2J7Q4F7   A0A3N5Z7I3   J9KC83   A0A2J7R2E1   A0A2J7Q0Q6   A0A2J7R6U1   X1X928   A0A2J7QFL0   X1X5Q5   A0A2J7QR37   A0A2J7RKP3   A0A1Y1MAT4   A0A2J7PMP9   A0A2J7QY69   A0A2J7PBY3   A0A2S2NKN0   A0A2J7PDS9   A0A2J7Q6J2   A0A2J7Q1Y9   A0A2J7QEZ4   A0A2J7Q5G9   A0A069DZL8   A0A023EYS8   J9KCZ4   Q07995   A0A0L0CBP5   A0A352X8G4   A0A2S2PH29   A0A087TPE4   A0A2J7QAT1   A0A2J7PU96   Q8T9X4   X1WNI2   Q8I7P8   A0A2J7Q2R1   A0A2J7RL12   A0A2S2QZC0   A0A2J7Q627   A0A2J7RS81   A0A2S2PPK8   A0A2J7R8R8   A0A2S2RAN7   A0A1Y1M7E9   X1WSV5   A0A2J7PDM0   A0A087T2T6   A0A087TG24   A0A0J7MT32   A0A2M4BD67   J9LR29   X1XFE3   A0A087TRT5   A0A1B6D7J6   A0A2M4BDV6   A0A2J7PVE7   A0A069DRZ5   A0A0A9Z4E6   A0A2H8TES1  

PDB

6AR3     E-value=0.000912856,     Score=100

KEGG

105842121    no KO assigned | (RefSeq) uncharacterized LOC105842121

GO

GO:0003964   GO:0004519   GO:0008270   GO:0003676  

Length:

381

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.570480000000001

Exp number, first 60 AAs:

0.03522

Total prob of N-in:

0.03024

outside

1  -  381

 

 

Pi

77.316743

Theta

59.119744

Tajima's D

0.862862

CLR

0.068555

CSRT

0.623518824058797

Interpretation

Uncertain