Gene

KWMTBOMO08870  Validated by peptides from experiments

Pre Gene Modal

BGIBMGA007706

Annotation

PREDICTED:_leucine-rich_repeat-containing_protein_57_[Amyelois_transitella]

Location

Bomo_Chr15(+):6812876-6813864      View in EpiBrowser

Location in the cell

Nuclear   Reliability : 2.175

CDS

ATGGGGAACGCTGGTTTAAAACAACATTATGAAACTGCATCGAAAACTGGTGTATTGCAAATAGCTGATTGTAAGCTTAAAGAAATTCCCATCGACGTATTCAGTTTATGTGATGTGCTACGAAATCTAGATCTGTCAAAAAACAAACTTTCTGTTTTACCTGACGATTTAAGCAAATTAAAACACCTGAAACAATTAAATTTAGATAGTAATAAACTTCAAGCTTTACCTGAATCACTCATAAACTTAAAAAAACTTGAAGTTTTAAATATATCAAACAACTTTGTACAAACACTCCCAGTTTGTTTGAAGAATTTAAATAATTTAAAACAGGTTTATGCAAGCAATAATAAATTACAGGCTTTTCCGAAACAAATACTTGGATTACAGAGCTTAGATGTTTTAGATCTGTCACATAATAAGATTACAGAGATTCCATATGGAATGTCAGAATTATATGTGATAGAGTTAAATCTGAGTCAAAATGAAATATCTTTGATTGGAGAAGACTTACACCAAGCTCCAAGATTAAAGATATTGCGATTGGATGAGAACTGTTTGAGTTTGGATGAAATCAAACCAAGTTTGCTTCGAGATTCCAAGATACACACTGTTAGTGTAGATGGTAATTTATTTGAGCCTAAACAGTTAGCATCACTTGAGGGCTATAATGAATACAGTGAAAGATATACTGCAATGAAGAAAAAAATGTTTTGA

Protein

MGNAGLKQHYETASKTGVLQIADCKLKEIPIDVFSLCDVLRNLDLSKNKLSVLPDDLSKLKHLKQLNLDSNKLQALPESLINLKKLEVLNISNNFVQTLPVCLKNLNNLKQVYASNNKLQAFPKQILGLQSLDVLDLSHNKITEIPYGMSELYVIELNLSQNEISLIGEDLHQAPRLKILRLDENCLSLDEIKPSLLRDSKIHTVSVDGNLFEPKQLASLEGYNEYSERYTAMKKKMF

Uniprot

H9JDV9   A0A2H1WH15   A0A212FH83   A0A0L7L0P3   A0A437AZX0   A0A194PII8   + More
A0A194RD64   A0A067QWT0   A0A2J7PJ32   A0A0L7QYZ0   A0A2P8YLN6   A0A026WF94   A0A0M8ZQL3   U5EL17   A0A232ET50   A0A0C9Q1M4   K7IZN7   A0A088ACM2   A0A2A3EP03   A0A310SH01   A0A154PJJ1   A0A195ERM0   A0A1J1I075   E2AFH1   A0A0J7KYZ3   E2C5V2   A0A195BR21   A0A195CND2   A0A1W4WT49   A0A195DHT4   F4WKD2   A0A0A1WQC5   W8B810   A0A158P1Q2   A0A0K8WDP5   A0A034V8F9   A0A1Y1K4U9   A0A151XAS9   E9J3Y3   A0A1B6EB31   A0A1L8DB69   A0A034V677   A0A0V0GC11   B4JLB7   A0A0K8UM95   A0A1W4UWD2   B3NXX9   B4NCS2   A0A0L0BWI8   A0A1L8DCR9   B4Q1D1   A0A084W2Z9   A0A182M5W2   B4R5W0   B4IHI2   Q9W3T9   A0A182PGZ5   A0A0P4ZMD2   A0A182JZM5   J3JYE1   A0A182VWE1   B0X7R9   A0A1A9XRV7   A0A1B0AP68   A0A023EKR0   A0A0P5KIT9   A0A1A9ZE58   A0A182UIF8   A0A182QMZ7   A0A182HL12   A0A182R505   A0A182V2A0   Q7PXN5   A0A182WS64   A0A336ML58   B4M6N2   A0A182L9D1   A0A093BDG7   E0VWT8   B4L204   A0A1A9UUN7   A0A093GAJ3   L7MDG9   A0A1E1XRJ6   B3MS52   E9HRR4   A0A091J250   A0A182YB91   A0A0K8TLW7   A0A0Q3RJI6   A0A1A9WPJ4   A0A093K7D1   A0A093FQX2   A0A182FRR5   A0A2M4BY96   A0A2M4AY58   A0A293LCF0   A0A2M3ZJA3   A0A2R5LGS1  

Pubmed

19121390    22118469    26227816    26354079    24845553    29403074    + More
24508170    30249741    28648823    20075255    20798317    21719571    25830018    24495485    21347285    25348373    28004739    21282665    17994087    26108605    17550304    24438588    10731132    12537568    12537572    12537573    12537574    16110336    17569856    17569867    26109357    26109356    22516182    24945155    26483478    12364791    14747013    17210077    20966253    20566863    25576852    29209593    21292972    25244985    26369729   

EMBL

BABH01002773    ODYU01008515    SOQ52182.1    AGBW02008520    OWR53102.1    JTDY01003880    + More
KOB68881.1    RSAL01000255    RVE43425.1    KQ459602    KPI93231.1    KQ460367    KPJ15552.1    KK853274    KDR09114.1    NEVH01024952    PNF16329.1    KQ414685    KOC63781.1    PYGN01000508    PSN45158.1    KK107274    QOIP01000008    EZA53684.1    RLU19216.1    KQ436003    KOX67633.1    GANO01001617    JAB58254.1    NNAY01002329    OXU21538.1    GBYB01007798    JAG77565.1    KZ288204    PBC33244.1    KQ766904    OAD53545.1    KQ434936    KZC11983.1    KQ982021    KYN30524.1    CVRI01000024    CRK92214.1    GL439108    EFN67864.1    LBMM01001944    KMQ95499.1    GL452837    EFN76680.1    KQ976419    KYM89333.1    KQ977595    KYN01594.1    KQ980824    KYN12463.1    GL888199    EGI65356.1    GBXI01013659    JAD00633.1    GAMC01009200    GAMC01009198    JAB97355.1    ADTU01006747    GDHF01003334    JAI48980.1    GAKP01020158    JAC38794.1    GEZM01092697    JAV56492.1    KQ982335    KYQ57483.1    GL768069    EFZ12440.1    GEDC01002167    JAS35131.1    GFDF01010373    JAV03711.1    GAKP01020156    JAC38796.1    GECL01000581    JAP05543.1    CH916370    EDW00370.1    GDHF01024517    GDHF01000534    JAI27797.1    JAI51780.1    CH954180    EDV47430.1    CH964239    EDW82631.1    JRES01001325    KNC23629.1    GFDF01009832    JAV04252.1    CM000162    EDX02420.1    ATLV01019742    KE525279    KFB44593.1    AXCM01003927    CM000366    EDX17296.1    CH480839    EDW49333.1    AE014298    AY060823    AAF46224.2    AAL28371.1    GDIP01214492    LRGB01000115    JAJ08910.1    KZS20812.1    BT128267    AEE63227.1    DS232459    EDS42081.1    JXJN01001236    JXUM01022600    GAPW01003851    KQ560636    JAC09747.1    KXJ81492.1    GDIQ01190582    JAK61143.1    AXCN02001524    APCN01000878    AAAB01008987    EAA00886.2    UFQT01000718    SSX26748.1    CH940653    EDW62449.2    KN125638    KFU83536.1    DS235824    EEB17844.1    CH933810    EDW07725.2    KL215719    KFV66193.1    GACK01003014    JAA62020.1    GFAA01001758    JAU01677.1    CH902622    EDV34607.1    GL732740    EFX65577.1    KL218481    KFP05866.1    GDAI01002254    JAI15349.1    LMAW01000714    KQK85865.1    KL206840    KFV86329.1    KK399431    KFV59085.1    GGFJ01008914    MBW58055.1    GGFK01012403    MBW45724.1    GFWV01006367    MAA31097.1    GGFM01007906    MBW28657.1    GGLE01004532    MBY08658.1   

Proteomes

UP000005204    UP000007151    UP000037510    UP000283053    UP000053268    UP000053240    + More
UP000027135    UP000235965    UP000053825    UP000245037    UP000053097    UP000279307    UP000053105    UP000215335    UP000002358    UP000005203    UP000242457    UP000076502    UP000078541    UP000183832    UP000000311    UP000036403    UP000008237    UP000078540    UP000078542    UP000192223    UP000078492    UP000007755    UP000005205    UP000075809    UP000001070    UP000192221    UP000008711    UP000007798    UP000037069    UP000002282    UP000030765    UP000075883    UP000000304    UP000001292    UP000000803    UP000075885    UP000076858    UP000075881    UP000075920    UP000002320    UP000092443    UP000092460    UP000069940    UP000249989    UP000092445    UP000075902    UP000075886    UP000075840    UP000075900    UP000075903    UP000007062    UP000076407    UP000008792    UP000075882    UP000009046    UP000009192    UP000078200    UP000053875    UP000007801    UP000000305    UP000054308    UP000076408    UP000051836    UP000091820    UP000053584    UP000069272   

PRIDE

H9JDV9    Q9W3T9   

Pfam

PF13855   LRR_8        + More
PF00560   LRR_1
PF13516   LRR_6
PF12799   LRR_4

Interpro

IPR003591   Leu-rich_rpt_typical-subtyp        + More
IPR001611   Leu-rich_rpt       
IPR032675   LRR_dom_sf       
IPR025875   Leu-rich_rpt_4       
IPR018247   EF_Hand_1_Ca_BS       

Gene 3D

3.80.10.10    

ProteinModelPortal

H9JDV9   A0A2H1WH15   A0A212FH83   A0A0L7L0P3   A0A437AZX0   A0A194PII8   + More
A0A194RD64   A0A067QWT0   A0A2J7PJ32   A0A0L7QYZ0   A0A2P8YLN6   A0A026WF94   A0A0M8ZQL3   U5EL17   A0A232ET50   A0A0C9Q1M4   K7IZN7   A0A088ACM2   A0A2A3EP03   A0A310SH01   A0A154PJJ1   A0A195ERM0   A0A1J1I075   E2AFH1   A0A0J7KYZ3   E2C5V2   A0A195BR21   A0A195CND2   A0A1W4WT49   A0A195DHT4   F4WKD2   A0A0A1WQC5   W8B810   A0A158P1Q2   A0A0K8WDP5   A0A034V8F9   A0A1Y1K4U9   A0A151XAS9   E9J3Y3   A0A1B6EB31   A0A1L8DB69   A0A034V677   A0A0V0GC11   B4JLB7   A0A0K8UM95   A0A1W4UWD2   B3NXX9   B4NCS2   A0A0L0BWI8   A0A1L8DCR9   B4Q1D1   A0A084W2Z9   A0A182M5W2   B4R5W0   B4IHI2   Q9W3T9   A0A182PGZ5   A0A0P4ZMD2   A0A182JZM5   J3JYE1   A0A182VWE1   B0X7R9   A0A1A9XRV7   A0A1B0AP68   A0A023EKR0   A0A0P5KIT9   A0A1A9ZE58   A0A182UIF8   A0A182QMZ7   A0A182HL12   A0A182R505   A0A182V2A0   Q7PXN5   A0A182WS64   A0A336ML58   B4M6N2   A0A182L9D1   A0A093BDG7   E0VWT8   B4L204   A0A1A9UUN7   A0A093GAJ3   L7MDG9   A0A1E1XRJ6   B3MS52   E9HRR4   A0A091J250   A0A182YB91   A0A0K8TLW7   A0A0Q3RJI6   A0A1A9WPJ4   A0A093K7D1   A0A093FQX2   A0A182FRR5   A0A2M4BY96   A0A2M4AY58   A0A293LCF0   A0A2M3ZJA3   A0A2R5LGS1  

PDB

4U06     E-value=2.75562e-16,     Score=206

KEGG

101741815    no KO assigned | (RefSeq) leucine-rich repeat-containing protein 57-like

GO

GO:0005515   GO:0008270   GO:0035246   GO:0015074   GO:0016817   GO:0043565   GO:0016876   GO:0043039  

Length:

238

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.00059

Exp number, first 60 AAs:

0

Total prob of N-in:

0.25445

outside

1  -  238

 

 

Pi

258.66944

Theta

201.966015

Tajima's D

0.883764

CLR

0

CSRT

0.627918604069796

Interpretation

Possibly Positive selection