SGID Silkworm Genome Informatics Database
Gene
KWMTBOMO08869
Pre Gene Modal
BGIBMGA007840
Annotation
PREDICTED:_polycomb_protein_Pcl_isoform_X3_[Bombyx_mori]
Location
Bomo_Chr15(-):6800713-6811385      View in EpiBrowser
Location in the cell
Nuclear   Reliability : 4.308
 

Sequence

CDS
ATGGACATCAAGGCTGAGGTCTCAAAACAACTGTCACTAATAGACGAACTCCTAAGGGACCTTGACAAAACGATTACACCATGTGCAAGTAAAAAGAATGAAAAAAAAGAAGAAGAAACACAGGATGCAATGCCAGACTCAACAACTAGCACCGAGAAAAACAATGCTAACCCATTCCACTGCGGAGATGATGTACTTGTGGCCAATAAGGATGGAAGATATTATTTAGGAACAATAATAGAGTTAAGTACGAGTAATGACAACGACTTGTGTGAGGTGGGCGCAAGCGTGGCCCGATGCTTAGTCAAGTTCGGCGACGGCACGCACTCATGGGCGCCAGTGTCGTCGCTAAAGCTGCTCAGCGTACCGCCCGCCGATGACGGTCGCATCATGTGCGTGGTGTGCAAGCGACGCGAGGGGCCTGCCACTGGACCGGCCACCAACGCTATCATCGCGTGCGACATGTGTGGCAGGGGCTACCACGCCAAATGTCACTCGCCCCCCGTCGATGCCTGGATCAATGGTGCATCATGGCATTGTAAAAGGTGTGTTGACCAAAGATACAGAGTAGCAGCAGCAGAAAACCGGGCATTGAAACGCTCAGATCTATTCAGGTTCAAAGGAGGACAACAACGAAGGCAACAGCAGGAGCTCACTCCACCTTGTGATACTGCATCCACTACTTCATCAACCGCATCTGAAGCTGGAAAAGATCAAAATGAAGCACATTGTTATTGTGGCGAAAAGAGTGATTGGCTTGCTCAGATGTTGCTGTGCTGTCGTTGCAGCCGTTGGTTTCACCAAAGATGTGTTTCAAGTCTACAATATCCTCTCTATGCAGGAGATAAGTTGTATATATTCGCTTGTGCTAGCTGTAACGGTGGTTCGGAGTATCTACGGCGGCTCGAGTTATGCTGGCTGGACCTGGCGCATCTTGCGCTATACAACCTCACCGCCTACAACGCGCCCAACTACTTTGATCTCGATAATGTAATCATGCCGTACATTATGGACAACTGGCACGCCCTGCAGTTACCCGAGAAAATGTGGCGAACTCCCGTAAATGAACGACGGGAGAAAATTCTAACAGCACTCACTTCGTCTCGAAAAAGATTCAAATGTGGTCGAGAGATGAAAAAACGAGCTACAATCTGGGGTCTCCGTCTCCGTCGACCTCCACCACCTCCGATGCAACTTTCAGCTTTAGAACAGATAAAGAAGGGAGAACCATTGACGGACGACTTGGTGCAACAACACGCTCCCAGACTCCGGTTTCTACCTCGTGCTCCTACACCGAAATCTGTTGTTGATGATAGTTCTCAGCCCTCTAGCAGCAATCCTGTAAAATGTTCCTATAAAAGTAACCATCAACGAATGATTGTTCCCGTTGATGGCCACTGGTTAAATTTAATGATGGGCAAACGGTTCCATGAGAACCTTAACTCAAACTCAAATTCAGAAAACGATTCTGCCAGTTCCTACGAGTCCATCAAGCTTATTGAGGCTGATGAACAAAACTCACCGTCCGTGTCTACAACTAATAGAAAATCTGAAGCCAAAGTTGATAATGTAGAAAATATAAAAGAAACCCGATCCAATGATAAACTAAGCTATGAAGAAGACCCTCCGATATCAGTGCCATCAGTAGTTCCGTGTTCAGTAAAGTTAGATAAAATATCCAAAGAGAATGTTGATCAGACTAGTATCTCTAAAAGTGAAGAAACTCATTTAAATTACAATGCCCATACAACAAGAATAGCTACAATGAATTTGGAAGTATCCAAGCTGTCCACAAAAAACATAATTGAACATTCCAAAATAATGTCACTGCAACATATGGAAACTGTACCATCATACACTAGCTTTAACCATGACCTAGAATCGTCTGGAGATGAAACTTCAAGTAGAGGAACTTTGGATGCTATTATACCGCCCCTGAAGAATTTTCAGGGAAGAAATAATCCTTTTTTGATGCAAAATACATCATCAAAAAAACCATTTTCGTCAATGACGAATATTTACCTTAAACCAAATAAAAAAGTGAACAATTTTCACTCAAGGTTTTCTTTGCCAGTACTGTTCAATCCCACAATGGGACCATTAATAAGACCTACGAAAAGAAAACTTAGTGAAAAGGATATTGTTATTGGACCAAATGGAGAGGTGAAGCGAAGAAAATATCGACGACCAAGAAAGTATTTACAAATGCAGTTAAACAAATCATGCCCCCTGCCTGATGACAGTAATAAGACTGCACCAACGCCGATGCCAACAGACAATGTCGAAGCACCATCTCAAACAGGGCACATCAATAACGTGAAATTTCACGGTAGAAGACTGAGACAAAGACAGGAAAAAAACTATTACGAGAATGCTAGACGGAACACGAATAGTAATAACACGGGTAATAACAACAGTGTGAAAAGTCTGCAGCTGAGCCCTCACAAATCGAACAGTAGTGCAAATGAAGTGAACGCTGAACAATTATCTGCTCTGAAGTCGAGTGTCCAGTCATACTTCCGCGCAGAGCAGACTTTCCGTGTACTGGCCAGACGACTCTGTCCGGGCGCGCCTCCTGCCTACCTCATTGAATGGGACTCCAACACATCATAA
Protein
MDIKAEVSKQLSLIDELLRDLDKTITPCASKKNEKKEEETQDAMPDSTTSTEKNNANPFHCGDDVLVANKDGRYYLGTIIELSTSNDNDLCEVGASVARCLVKFGDGTHSWAPVSSLKLLSVPPADDGRIMCVVCKRREGPATGPATNAIIACDMCGRGYHAKCHSPPVDAWINGASWHCKRCVDQRYRVAAAENRALKRSDLFRFKGGQQRRQQQELTPPCDTASTTSSTASEAGKDQNEAHCYCGEKSDWLAQMLLCCRCSRWFHQRCVSSLQYPLYAGDKLYIFACASCNGGSEYLRRLELCWLDLAHLALYNLTAYNAPNYFDLDNVIMPYIMDNWHALQLPEKMWRTPVNERREKILTALTSSRKRFKCGREMKKRATIWGLRLRRPPPPPMQLSALEQIKKGEPLTDDLVQQHAPRLRFLPRAPTPKSVVDDSSQPSSSNPVKCSYKSNHQRMIVPVDGHWLNLMMGKRFHENLNSNSNSENDSASSYESIKLIEADEQNSPSVSTTNRKSEAKVDNVENIKETRSNDKLSYEEDPPISVPSVVPCSVKLDKISKENVDQTSISKSEETHLNYNAHTTRIATMNLEVSKLSTKNIIEHSKIMSLQHMETVPSYTSFNHDLESSGDETSSRGTLDAIIPPLKNFQGRNNPFLMQNTSSKKPFSSMTNIYLKPNKKVNNFHSRFSLPVLFNPTMGPLIRPTKRKLSEKDIVIGPNGEVKRRKYRRPRKYLQMQLNKSCPLPDDSNKTAPTPMPTDNVEAPSQTGHINNVKFHGRRLRQRQEKNYYENARRNTNSNNTGNNNSVKSLQLSPHKSNSSANEVNAEQLSALKSSVQSYFRAEQTFRVLARRLCPGAPPAYLIEWDSNTS

Summary

Uniprot
H9JE93   A0A2A4J3V6   A0A3S2LTC8   S4PXS3   A0A2H1WGI6   A0A212FHA7   + More
A0A194PQ21   A0A194RCI5  
Pubmed
19121390    23622113    22118469    26354079   
EMBL
BABH01002774    NWSH01003398    PCG66368.1    RSAL01000255    RVE43426.1    GAIX01004538    + More
JAA88022.1    ODYU01008515    SOQ52181.1    AGBW02008520    OWR53103.1    KQ459602    KPI93230.1    KQ460367    KPJ15553.1   
Proteomes
UP000005204    UP000218220    UP000283053    UP000007151    UP000053268    UP000053240    + More
PRIDE
H9JE93   
Pfam
PF00628   PHD
Interpro
IPR011011   Znf_FYVE_PHD        + More
IPR013083   Znf_RING/FYVE/PHD       
IPR001965   Znf_PHD       
IPR019787   Znf_PHD-finger       
IPR019786   Zinc_finger_PHD-type_CS       
SUPFAM
SSF57903   SSF57903       
Gene 3D
3.30.40.10    
ProteinModelPortal
H9JE93   A0A2A4J3V6   A0A3S2LTC8   S4PXS3   A0A2H1WGI6   A0A212FHA7   + More
A0A194PQ21   A0A194RCI5  
PDB
5XFR     E-value=1.94653e-50,     Score=506

Ontologies

KEGG
100862749    K11485 metal regulatory transcription factor 2 | (RefSeq) PCL; polycomb protein Pcl
GO
GO:0046872   GO:0005515   GO:0008270   GO:0035246   GO:0015074   GO:0016817   GO:0043565   GO:0016876   GO:0043039  

Topology

Length:
870
Number of predicted TMHs:
0
Exp number of AAs in TMHs:
0.00325
Exp number, first 60 AAs:
0
Total prob of N-in:
0.00017
outside
1  -  870
 
 

Population Genetic Test Statistics

Pi
233.336886
Theta
182.311123
Tajima's D
0.859147
CLR
0.090973
CSRT
0.624068796560172
Interpretation
Uncertain
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