Gene

KWMTBOMO08849  Validated by peptides from experiments

Pre Gene Modal

BGIBMGA007848

Annotation

PREDICTED:_sarcosine_dehydrogenase?_mitochondrial_[Papilio_xuthus]

Location

Bomo_Chr15(-):6418759-6435827      View in EpiBrowser

Location in the cell

Mitochondrial   Reliability : 1.795

CDS

ATGTTCAAAGTCATACGAGACGGCAGCGTTAGGGTAAGAGCAAGTAATTTCCTAAAACGATCCAATACGATACGATTTTCGAGTGGCGCCGGTTCCAAAGATGAGGTCGTGTCGTCGGCCGATGTTGTTATTATCGGGGGAGGCATAGCGGGCTGTAACACGCTCTACCAGCTATCGAAGCGAGGCGTGAATGCGGTTTTATTAGAAAGAGCTAAATTAACAAGCGGAACGACATGGCACACCGCCGGAATGGTATGGTCCCTTCGACCGTGCGATTTGGAAGTAAAATTGCTTCGAGATTCGAGAACTGTATACAGCGCGCTCGCGAAAGAAGTAGACGATTACGCCGGATGGATAAACAATGGAGGCATGTTCATATCAAGAAGCACGGTTCGTACACAAGAGTATTTACGTCTTCATACTTTGGGTAAAGCAATGGGAATCCCCAGTGAAGTGTTGGACCCTCATGAAGCGCAGAAAATCTTTCCACTGTTGGACCCATCAGCGTTCAAAATGGCTCTTTACGCAACGGAAGACGGTACTATCGATCCGGCGATGGCTTGCAGTGCGCTTGTCAAGGTTGCTAAGAAGAACGGTGCAAAGGTTTACGAAGACTGTCCGGTTGTTGACGTTCATTATTCGCACAACCTGCTCGGAAATAAGGAAGTAACCGGGGTACACACGGACCGAGGTTTCATTAAGACCAAATGCGTGGTGAACTGTGGAGGTGCTTGGGGTGCAAGAGTAGCCAGGTTTGCGGGAGTACCTTCATTGCCACTGATACCTTTCAAACACGCGTATATAGTGTGCGAAGCTATCCCTGAAATAAGAGGTGGACCCAACATCAGGGATCATGACACGAGCTTATATATAAAGGTGCAAGGGGAAACCTGCAGCATTGGAGGTTACGAGGGAAACCCACATATGTTAGATCAGGTACCAGACAATCTGCAGTTCCACTTGTACGAACTGGACTGGGATGTGTTCGGTGTTCATATGCAAAGCGCCACGTCTCTGTGTCCCAAGCTCGGGACGACGGGGATCAAGAGTACGATATGCGGTCCAGAGTCGTTCACGCCTGACCACAAACCTTTGTTGGGAGAAGATACCAACGTCTTTGGTTTATACCACAACTGCGGATATAACTCGGCCGGCATGATGTTTTCCGCTGGTTGCGCCATACAAATGGCGGAATGGATCACCAAAGGCAGGCCGCACTACAACATGTTCTCGTTTGACATACGTCGCTTCACGCCCGCGCAAATGTCGAGAGCGCACTGGATGCGCGAGAGCAGCCACGAGTCGTACGTCCGGAACTACAACATCGTGTTCCCGAACGACGAGAAGCTGGCGGGCAGGGACGCCAGCCACGACGCGCTGCACCAGGAGCTGGTCGACGACGGAGCCGTCATGCAGGCCAGGGCCGGCTGGGAGAGACCCGCCTTCTATATACCCGGGGAAAAGATAAGAGTTCAGCAGTATGACTGGGGCGGTACCAACGATTATCCGAGGAACATCGACCAACGCTACGAAGACATCTTGAAGGGAGAATACACTTTCGGTTTCTCGAAGCATCACGATTTGATCGGCAAAGAGGCGCTCGCCTGCCGGAACGGGGCCGCGTTGTTCAACATGTCTTATTACGGGAAGTTCTACCTGACAGGACCCGACGCTCAGCGCACCGCCGACCTGGCCTTCACGGCTGACTTAACTAAACGAGACGAAAGGGTGATGTATTCTCTACTTCTAAATGACAAAGGCGGTGTCGAAGCCGATGTTACTGTCAGCATTATGGACGGTGGCAGTGGACAACTGCACGAACCTATATTCAAAGGTCGAGGGTACTACGTGGTGACGAGCGGTTTCAGTGCGAACCACACGTTGGCACATTTGAGGCGGATCGTGCAAACCCACAAACTCAGGGCCACCATCACTGATGTGTCGAAACAACTTTGTATCCTCAGTATACAAGGACCTAACAGCCAAAGAATCCTCCAGCGCTACACAGACGCAGGGCTATCGAACGACGCATTCCCTCTTAACACGCACCGGAGTATCCACGTATCGAAAGCTCCTTATTCCCCCGAGAATAAGACCTACACTTGCCGAGCACTGCGCGTGGCCTGGGCCGGCGAGCTGGGCTGGGAGCTGCACATCCCCTCCGCGAACGCTGTGCAAGTGTACCAGGCTCTGAGGAAAGCGAAAGGCCTGACTAATGCAGGATGGAGGGCTCTGACCTCTCTCAGTGCTGAAAAAGGTTATCATCTATGGAACGCTGATTTAAGACCGGACGACAACCCCATCGAGGCGAACCTTGGTTTCACTTGCAGGAAAGGTGGCGAGTATATCGGGAACGAGTACGTAACGAAGGCCCTCGCTAATGGCGTAACTAAGAAATATGGCTACTTCACACTTGACGACAAAGTTGCTTTGTTCGGCCACGAAGCTATATTCAGAAACGGCGTGCCGGTCGGATACCTGCGACGCGGAGACTACGGCCACTATCTAGACAAACCAATAGGGATTGGTTACGTTACGAACAAAGACTCGATCGTGACCAAAGAGTATTTGAAAGAAGGAAACTACGAGATAGAAGTGATGGGACAGAAGTACAAGGCGACGTTTCACTTCAAATCCCCTTTCGACCCTCACGGGCAAAGGCTGCTCGGAAACTACGGAGATCAGGGCATGGATGAGAACACGCACGAACCTCACGCTGGACAAAACGAACGGGCTGGCGGCAGTGAATAA

Protein

MFKVIRDGSVRVRASNFLKRSNTIRFSSGAGSKDEVVSSADVVIIGGGIAGCNTLYQLSKRGVNAVLLERAKLTSGTTWHTAGMVWSLRPCDLEVKLLRDSRTVYSALAKEVDDYAGWINNGGMFISRSTVRTQEYLRLHTLGKAMGIPSEVLDPHEAQKIFPLLDPSAFKMALYATEDGTIDPAMACSALVKVAKKNGAKVYEDCPVVDVHYSHNLLGNKEVTGVHTDRGFIKTKCVVNCGGAWGARVARFAGVPSLPLIPFKHAYIVCEAIPEIRGGPNIRDHDTSLYIKVQGETCSIGGYEGNPHMLDQVPDNLQFHLYELDWDVFGVHMQSATSLCPKLGTTGIKSTICGPESFTPDHKPLLGEDTNVFGLYHNCGYNSAGMMFSAGCAIQMAEWITKGRPHYNMFSFDIRRFTPAQMSRAHWMRESSHESYVRNYNIVFPNDEKLAGRDASHDALHQELVDDGAVMQARAGWERPAFYIPGEKIRVQQYDWGGTNDYPRNIDQRYEDILKGEYTFGFSKHHDLIGKEALACRNGAALFNMSYYGKFYLTGPDAQRTADLAFTADLTKRDERVMYSLLLNDKGGVEADVTVSIMDGGSGQLHEPIFKGRGYYVVTSGFSANHTLAHLRRIVQTHKLRATITDVSKQLCILSIQGPNSQRILQRYTDAGLSNDAFPLNTHRSIHVSKAPYSPENKTYTCRALRVAWAGELGWELHIPSANAVQVYQALRKAKGLTNAGWRALTSLSAEKGYHLWNADLRPDDNPIEANLGFTCRKGGEYIGNEYVTKALANGVTKKYGYFTLDDKVALFGHEAIFRNGVPVGYLRRGDYGHYLDKPIGIGYVTNKDSIVTKEYLKEGNYEIEVMGQKYKATFHFKSPFDPHGQRLLGNYGDQGMDENTHEPHAGQNERAGGSE

Uniprot

H9JEA1   A0A2A4JAY5   A0A2H1WIQ3   A0A437AZ57   A0A194PQH7   A0A2W1BDD2   + More
A0A212F4B6   Q16F15   Q16U39   A0A1S4G351   A0A1Q3FQR0   B0XBR3   A0A084WK71   A0A182NK58   A0A182JM33   A0A182QWE8   A0A182P0N4   A0A182MUQ5   A0A182RP61   A0A182YEL1   A0A182UYI8   A0A182I2I9   A0A182TX51   Q7QIX8   A0A182WLI4   A0A182JND4   A0A182FMR1   A0A182FM00   A0A182H1G3   W5JF49   A0A336MEF7   A0A067R4F0   D2A2T4   U5EXD6   A0A2J7PZX4   A0A1J1ICL1   A0A232FLW0   W8ARN6   B3MIC6   A0A1L8E2P6   A0A1I8PBW4   A0A1W4VEK9   A0A0M3QTG2   A0A0A1X5I3   A0A2J7Q001   A0A0K8UZQ0   K7IQ41   B4NNG9   A0A0K8UB19   B4P539   B3NLJ7   Q28XF9   B4LS22   A0A0L0CBC8   A0A0J9RFJ6   A0A1A9VJ05   B4KKA6   B4QBE0   T1PCM5   A1ZAZ2   T2FFP0   B4GG26   A0A1I8MYY1   A0A1A9YD15   A0A1B0C276   A0A3B0J195   Q8IGS5   B4HN74   A0A026WWX9   A0A3L8DBA7   A0A1A9WQP7   B4JDE3   E9IMB3   A0A1Y1KIJ0   E2BM76   A0A1Y1MDL9   A0A336L052   F4WFF6   A0A151X669   A0A154P7I9   A0A195ELR1   A0A195CQC8   A0A195F9A5   A0A158NCL2   E2AK77   A0A195BYI4   E9G245   A0A1A7X306   A0A0N8DIM5   A0A3Q2XBT7   A0A0P5EQK7   A0A3Q3AVC2   A0A0P6HX66   A0A2I4AV08   A0A0F8BHT5   A0A3B4XIJ8   A0A3B4Z3X9   A0A3Q3XRA7  

Pubmed

19121390    26354079    28756777    22118469    17510324    24438588    + More
25244985    12364791    14747013    17210077    26483478    20920257    23761445    24845553    18362917    19820115    28648823    24495485    17994087    25830018    20075255    17550304    15632085    26108605    22936249    10731132    12537568    12537572    12537573    12537574    16110336    17569856    17569867    25315136    24508170    30249741    21282665    28004739    20798317    21719571    21347285    21292972    25835551   

EMBL

BABH01002811    BABH01002812    BABH01002813    BABH01002814    NWSH01002160    PCG69019.1    + More
ODYU01008934    SOQ52953.1    RSAL01000249    RVE43496.1    KQ459596    KPI95562.1    KZ150252    PZC71804.1    AGBW02010386    OWR48588.1    CH478530    EAT32824.1    CH477632    EAT38046.1    GFDL01005084    JAV29961.1    DS232648    EDS44412.1    ATLV01024097    KE525349    KFB50615.1    AXCN02000429    AXCM01005411    APCN01000164    AAAB01008807    EAA04109.4    JXUM01103338    JXUM01103339    KQ564796    KXJ71741.1    ADMH02001376    ETN62716.1    UFQS01000716    UFQT01000716    SSX06383.1    SSX26737.1    KK852703    KDR18080.1    KQ971339    EFA02777.2    GANO01002588    JAB57283.1    NEVH01020330    PNF21879.1    CVRI01000047    CRK97292.1    NNAY01000067    OXU31337.1    GAMC01015085    JAB91470.1    CH902619    EDV36974.1    GFDF01001185    JAV12899.1    CP012523    ALC38829.1    GBXI01007703    JAD06589.1    PNF21899.1    GDHF01020529    JAI31785.1    CH964282    EDW85908.2    GDHF01028546    JAI23768.1    CM000158    EDW91740.1    CH954179    EDV54972.1    CM000071    EAL26357.2    CH940649    EDW64708.1    JRES01000655    KNC29525.1    CM002911    KMY94676.1    CH933807    EDW12637.1    CM000362    EDX07564.1    KA646517    AFP61146.1    AE013599    AAF57796.1    BT150245    AGV77147.1    CH479183    EDW35446.1    JXJN01024372    OUUW01000001    SPP74904.1    BT001625    AAN71380.1    CH480816    EDW48356.1    KK107077    EZA60557.1    QOIP01000010    RLU17616.1    CH916368    EDW03313.1    GL764129    EFZ18516.1    GEZM01085251    JAV60040.1    GL449158    EFN83202.1    GEZM01034102    GEZM01034101    JAV83919.1    UFQS01000742    UFQT01000742    SSX06520.1    SSX26869.1    GL888115    EGI67207.1    KQ982490    KYQ55799.1    KQ434831    KZC07832.1    KQ978691    KYN29215.1    KQ977408    KYN02953.1    KQ981727    KYN36961.1    ADTU01011958    ADTU01011959    GL440194    EFN66181.1    KQ976396    KYM92998.1    GL732530    EFX86182.1    HADW01011016    SBP12416.1    GDIP01030047    JAM73668.1    GDIP01144768    LRGB01002384    JAJ78634.1    KZS07890.1    GDIQ01028506    JAN66231.1    KQ046811    KKF09029.1   

Proteomes

UP000005204    UP000218220    UP000283053    UP000053268    UP000007151    UP000008820    + More
UP000002320    UP000030765    UP000075884    UP000075880    UP000075886    UP000075885    UP000075883    UP000075900    UP000076408    UP000075903    UP000075840    UP000075902    UP000007062    UP000075920    UP000075881    UP000069272    UP000069940    UP000249989    UP000000673    UP000027135    UP000007266    UP000235965    UP000183832    UP000215335    UP000007801    UP000095300    UP000192221    UP000092553    UP000002358    UP000007798    UP000002282    UP000008711    UP000001819    UP000008792    UP000037069    UP000078200    UP000009192    UP000000304    UP000000803    UP000008744    UP000095301    UP000092443    UP000092460    UP000268350    UP000001292    UP000053097    UP000279307    UP000091820    UP000001070    UP000008237    UP000007755    UP000075809    UP000076502    UP000078492    UP000078542    UP000078541    UP000005205    UP000000311    UP000078540    UP000000305    UP000264820    UP000076858    UP000264800    UP000192220    UP000261360    UP000261400    UP000261620   

PRIDE

H9JEA1    A1ZAZ2    Q8IGS5   

Pfam

PF01266   DAO        + More
PF08669   GCV_T_C
PF01571   GCV_T
PF16350   FAO_M
PF00415   RCC1
PF00632   HECT
PF03256   ANAPC10
PF06701   MIB_HERC2
PF11515   Cul7

Interpro

IPR013977   GCV_T_C        + More
IPR006076   FAD-dep_OxRdtase       
IPR032503   FAO_M       
IPR027266   TrmE/GcvT_dom1       
IPR006222   GCV_T_N       
IPR036188   FAD/NAD-bd_sf       
IPR029043   GcvT/YgfZ_C       
IPR023827   Peptidase_S8_Asp-AS       
IPR010606   Mib_Herc2       
IPR006624   Beta-propeller_rpt_TECPR       
IPR036400   Cyt_B5-like_heme/steroid_sf       
IPR009091   RCC1/BLIP-II       
IPR037252   Mib_Herc2_sf       
IPR004939   APC_su10/DOC_dom       
IPR008979   Galactose-bd-like_sf       
IPR000408   Reg_chr_condens       
IPR035983   Hect_E3_ubiquitin_ligase       
IPR037976   HERC2_APC10       
IPR014722   Rib_L2_dom2       
IPR000569   HECT_dom       
IPR021097   CPH_domain       
IPR009060   UBA-like_sf       

SUPFAM

SSF51905   SSF51905        + More
SSF101790   SSF101790       
SSF49785   SSF49785       
SSF55856   SSF55856       
SSF50985   SSF50985       
SSF46934   SSF46934       
SSF159034   SSF159034       
SSF56204   SSF56204       

Gene 3D

3.30.1360.120     3.50.50.60     2.130.10.30     2.30.30.30     2.30.30.920     2.60.120.260     3.10.120.10    

CDD

cd00078  HECTc
cd08664  APC10-HERC2

ProteinModelPortal

H9JEA1   A0A2A4JAY5   A0A2H1WIQ3   A0A437AZ57   A0A194PQH7   A0A2W1BDD2   + More
A0A212F4B6   Q16F15   Q16U39   A0A1S4G351   A0A1Q3FQR0   B0XBR3   A0A084WK71   A0A182NK58   A0A182JM33   A0A182QWE8   A0A182P0N4   A0A182MUQ5   A0A182RP61   A0A182YEL1   A0A182UYI8   A0A182I2I9   A0A182TX51   Q7QIX8   A0A182WLI4   A0A182JND4   A0A182FMR1   A0A182FM00   A0A182H1G3   W5JF49   A0A336MEF7   A0A067R4F0   D2A2T4   U5EXD6   A0A2J7PZX4   A0A1J1ICL1   A0A232FLW0   W8ARN6   B3MIC6   A0A1L8E2P6   A0A1I8PBW4   A0A1W4VEK9   A0A0M3QTG2   A0A0A1X5I3   A0A2J7Q001   A0A0K8UZQ0   K7IQ41   B4NNG9   A0A0K8UB19   B4P539   B3NLJ7   Q28XF9   B4LS22   A0A0L0CBC8   A0A0J9RFJ6   A0A1A9VJ05   B4KKA6   B4QBE0   T1PCM5   A1ZAZ2   T2FFP0   B4GG26   A0A1I8MYY1   A0A1A9YD15   A0A1B0C276   A0A3B0J195   Q8IGS5   B4HN74   A0A026WWX9   A0A3L8DBA7   A0A1A9WQP7   B4JDE3   E9IMB3   A0A1Y1KIJ0   E2BM76   A0A1Y1MDL9   A0A336L052   F4WFF6   A0A151X669   A0A154P7I9   A0A195ELR1   A0A195CQC8   A0A195F9A5   A0A158NCL2   E2AK77   A0A195BYI4   E9G245   A0A1A7X306   A0A0N8DIM5   A0A3Q2XBT7   A0A0P5EQK7   A0A3Q3AVC2   A0A0P6HX66   A0A2I4AV08   A0A0F8BHT5   A0A3B4XIJ8   A0A3B4Z3X9   A0A3Q3XRA7  

PDB

5L46     E-value=1.8831e-81,     Score=774

KEGG

101743034    K00314 sarcosine dehydrogenase [EC:1.5.8.3] | (RefSeq) sarcosine dehydrogenase, mitochondrial

PATHWAY

00260    Glycine, serine and threonine metabolism - Bombyx mori (domestic silkworm)
01100    Metabolic pathways - Bombyx mori (domestic silkworm)

GO

GO:0016491   GO:1901053   GO:0005737   GO:0005739   GO:0005759   GO:0008480   GO:0016021   GO:0033353   GO:0016740   GO:0046872   GO:0004842   GO:0016874   GO:0005515   GO:0000413   GO:0008270   GO:0015074   GO:0016817   GO:0043565   GO:0016876   GO:0043039   GO:0055114  

Length:

916

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.13629

Exp number, first 60 AAs:

0.12114

Total prob of N-in:

0.00594

outside

1  -  916

 

 

Pi

221.091547

Theta

177.630963

Tajima's D

0.116589

CLR

1.027

CSRT

0.403729813509325

Interpretation

Uncertain