Silkworm Genome Informatics Database

Gene

KWMTBOMO08833

Pre Gene Modal

BGIBMGA007861

Annotation

PREDICTED:_collagen_alpha-1(I)_chain-like_[Papilio_machaon]

Location

Bomo_Chr15(-):6074025-6109051 View in EpiBrowser

Location in the cell

Nuclear Reliability : 3.079

CDS

ATGCTGCAAGCCATTATTCCAGTACTAGTCCTCGCAACAGCGGCGTTATCTTCCAGCAACATTCTTCCATTGCTGTCCAAAAATCAACTGGAAACAGAACCATTCGACTTGAATGATCTACAAAACGACAATATATTTAGCAGTCAATTTCATAATATAAAATTACCCGGCAGCCTATATTTGAGCCCGCAGTCCGAAGTACAAGACGATATAAATCTGGAATTAAAAAAATCAGAATTACAATTCCCAGACCCTAAAAACGATGAATGGTTAACGAACTTGAATATTATCAATAAGAAAGAGAATTACAATGATGAGGGGTTCAGGCAAGAGCAATGGCATAACTATCCCAGACAACTTGATCGACTGCACAAATATTTATACGAACATTATAATGTTGATAAAAGGAGCTTGGACGTCAACGGACAACTTGAAGACGAAGACAGAGAGCAACAAACTTTAGACGAAGAACCAATATATGAAGCAATGGCCAACAAGGCCGATTTAAATGAAAACATTGACGGCGAGTACGTCCGTTCTGCTGATCCTATGTTAAAAGACATTCGCTTTGAATATAAAGACGATGTTGAATCAGCAATCGTATCAGAAACTCAACCGCGAAAGAACGAACGTAAAGATGTAAACGCACGACTAAACATTGATTTAAACCCCGAAATCGCTTTATTAAAAGATAAATTAGATAAAACCGAAAATACAGAAAATTCCATGGAAGAAAATAAAGTGGTGGCAAAAAGGATATTCTCCCTGTGGAGTCGTCTCCAAGGTCTGAACCATAACAGAGGCCATGAACTCCACCACAGGCGGCATTTGCACGCGTTCTATGGACTTCCTGACGGCGACGGAGGAGGAGTGTTAACTGCTGAAACCAGGGCCACATTGATGAGACCGCCAGGATCTCCGCTTAGATGGGCGACAATGGTTGAAAATCGTGTGATTTTGCACGCCTATTGGCTGTCTTCGTGTTCGTGGCGTGTTCGAGCAATGCTACATGCAAAAAGCATACCTTTCGAAGAACGTCCGGTGGATATTGTAAAAACTGGTAAACAGCTAACTGAAGAGTACAGAGCCATCAATCCAGCGCAAAAAGTACCAGCTCTCGAGATAGATGGAGTCACCTTAGTCGAATCTATGGCGATAATACAGTACATAGAAGATACGAGACCTGAACCGAAACTCATGCCAGACACAGCACTACAACGCGCCCGTATGAGAGAAATATGCGAGACTATTGTATCCGGTATACAACCATTACAAAATTTCGGTCTGAAGAAACATTTGGGAACGGAGGAGAAATTCCTTAGCTTCACAAAATACTGGACTGAAAGAGGACTGCAAACGCTCAATGATTTGTTAGCGAAAACATCAGGAGCTTACTGCATCGGAGATCAAATTACGTTGGCTGATATCTGTCTTGTGCCACAAATTTATAACGGAGTAAGCAGACATAAATTGGATTTAAAGACGTATCCAATAGTATCCAAAGTTTACGAGAATTTATTGAAAGAAGAATTATTTCAGGCGACTCACCCAAAAGCCACTAAGGAAAAGTTGAAAATCAATTTTGGAGGAAGCGGGGACGATGTAGTCGATGGAGTAGCGTTCTTTGACCTACTGTCGGAGGTGCGCCGCGGTGATCTACCCGAAGGATTCACAAGAACTGAAGGACGATGCCAATCTTACTCGACGCCCAAATCTGAATACACCGCCTTCAGTCTAAACGAAAATGCGTCCTTACATCATCTCACCGCGGGGATGTTTTACAACACGTTCCCTGAGGACTTTTCCATTTTGGCCGTACTTAGAATGCCAAACGGCACAGAACAGAACCCCGTATTCGTGATGTACTCGGATGCTGGTGACGAACAACTGCAACTGGTAGTTGGAGAGATGGTCGAGTTATATTACGAAGATACAAGGGGTGACCCTCAAGATCATGAGCTCCTAACTTATCGCGCTAATATTGCTGAAGGAAGATGGCATCGTCTAGCACTCAGCCTAAAAGGCGATTCTGCCACTCTTATCGTGGATTGCGATTACATAGAAACAATGCCTCTAAATCGAAAAACTGGGAGCACGTTCAACTTAGCCGGTGCTATCGTTGTGGGAGTCCAGTATACCCCAGATCAATATTACGAGGGGGATATAGAAATGCTACAGTTCGCTGACAAACCTGATATTGCCTACGAAATGTGCACAGTAGTTGCACCAGACTGCAGAGGCCTCGGCTACTTTGCAGGAGGAATTTTTAATTCTGAACTAGAACCCCGATATCGACCTCTTCATTACAACGAAATAACTACTCAAACAGACTTTAATGTTGAAACTACAGAGCAGCCGAGGACATTTGAGAATGTCGATACAGAAAGATTCATTGATAGGAATCAAACTAATAATCCATGGGAAGTCGCTAGCAGAGAATTAACAACGATCAGACCAAACTGGCACATCACAGAGTCATACAATCCGATTACGGGACAATTCGTACGTTCTACAGATGCAGATGAAAACAGCATATTTGGAAGATTTACGGATGGCGAATTTACACCTGCTCTCTCATTAGACGCTGATAGCTCTCCGACCACTCCTGAAACTGTTGAAATAACGCCTAGTCTTGATACCTCACACATTACGCCAGGGACCGGTGAAGAGACGGAAGTAACTTTAGTAACAACAGACTCGCCCTACACCCCTATTACGACCACAGAAGACACAAATTGGCTCACACACCCGCCGGATGAAGCCGAAAATAACTCATCAAATTATGATTCATCAGAAACATATTATGATTATGGTAGCTCTGGCTCGTATAATGGTCCAAGAGGATATGCCGGACCGCCTGGACCCCAGGGACCAAGAGGACCGAAAGGTGAACCAGGCAAACCAGGAGTAGAAGGACAACAAGGGTTTCAAGGTCCGCCTGGACATGTTTTTGTCGTACCTATACAACAATCAGGCAGTGATAAAGGCCCCGATGTTCAGTCTGAAGCCTTGCGACAAATGTTAACGCAACACATGGCTGCAATGCGAGGTGTTGAGGGCCCGATGGGTCTAACCGGACCTCCGGGACCTGAAGGTGGAATTGGTCCTGAAGGACCGAAGGGTGAACAGGGCGAACAAGGAGAGCCAGGCCCACCAGGTCCAAGAGGTTCTCAAGGGCCGCCAGGCAGACAAGGACGCCGGGGTCATGCCGGCAGGGATGGCGAAAGAGGTACAACAGGACCTTTCGGTCAAAAGGGTGAACCAGGATACCCGGGATCTTCAGGCATGCCAGGAGACAAAGGAGAGCGGGGCATCTCAGGATTACAGGGTGAACCAGGAGCTCCAGGACAAGACGGTCCCCCTGGAGACGACGGTCCTCCGGGGCCACAAGGGCTTTCTGGCGAACTGGGGCCAAGAGGTTTTGTGGGACCTAGAGGTTTTCCAGGCTTAATAGGATATCCTGGCATACCTGGGAACGAGGGTCTCCAAGGATCGAAAGGAGCAACAGGACAACCAGGGCCATCCGGGCCGCAAGGACAACCAGGTATAAGTGGGCCTCCAGGAGCACCAGGTGCACAAGGACCAACCGGAATACCGGGCTTGCAGGGGCCTCAAGGAAAATCTGGAATATCCGGACAACCAGGACCGGAAGGAGTACCCGGTACCCCTGGTAATCCAGGACAACAAGGATCTCCAGGAGAAGTTGGGCCACAAGGACCACAGGGAATGTTAGGTTTCCCTGGAACTCGTGGAATAAAAGGAGATGAAGGACCACGGGGCTTACCAGGAGACAAAGGAGATAAAGGCATAAGGGGCATTGAAGGCGAGAAAGGAGACATGGGTCCTAAAGGAGAACGAGGACTATCTGGCGAAGTTGGGACTCCTGGTATAGAAGGGCCTGAAGGTCAGAAGGGCGTTGAAGGTCCAAGAGGAGAGACAGGACCAATTGGACCTTCAGGTGAGAAGGGAGCTACTGGTCCTCTCGGTCCTCAAGGATATCCGGGCACCCAAGGTGAAAAAGGAGATAAAGGAGCTTCAGGACGAAGAGGTCGAAGAGGAAACAAAGGAAATACGGGTGCTATTGGAAATCCAGGCGACCGTGGTGAAATGGGACCAAGGGTAAGTATTACAAAAACCTCTCAGTCTTAA

Protein

MLQAIIPVLVLATAALSSSNILPLLSKNQLETEPFDLNDLQNDNIFSSQFHNIKLPGSLYLSPQSEVQDDINLELKKSELQFPDPKNDEWLTNLNIINKKENYNDEGFRQEQWHNYPRQLDRLHKYLYEHYNVDKRSLDVNGQLEDEDREQQTLDEEPIYEAMANKADLNENIDGEYVRSADPMLKDIRFEYKDDVESAIVSETQPRKNERKDVNARLNIDLNPEIALLKDKLDKTENTENSMEENKVVAKRIFSLWSRLQGLNHNRGHELHHRRHLHAFYGLPDGDGGGVLTAETRATLMRPPGSPLRWATMVENRVILHAYWLSSCSWRVRAMLHAKSIPFEERPVDIVKTGKQLTEEYRAINPAQKVPALEIDGVTLVESMAIIQYIEDTRPEPKLMPDTALQRARMREICETIVSGIQPLQNFGLKKHLGTEEKFLSFTKYWTERGLQTLNDLLAKTSGAYCIGDQITLADICLVPQIYNGVSRHKLDLKTYPIVSKVYENLLKEELFQATHPKATKEKLKINFGGSGDDVVDGVAFFDLLSEVRRGDLPEGFTRTEGRCQSYSTPKSEYTAFSLNENASLHHLTAGMFYNTFPEDFSILAVLRMPNGTEQNPVFVMYSDAGDEQLQLVVGEMVELYYEDTRGDPQDHELLTYRANIAEGRWHRLALSLKGDSATLIVDCDYIETMPLNRKTGSTFNLAGAIVVGVQYTPDQYYEGDIEMLQFADKPDIAYEMCTVVAPDCRGLGYFAGGIFNSELEPRYRPLHYNEITTQTDFNVETTEQPRTFENVDTERFIDRNQTNNPWEVASRELTTIRPNWHITESYNPITGQFVRSTDADENSIFGRFTDGEFTPALSLDADSSPTTPETVEITPSLDTSHITPGTGEETEVTLVTTDSPYTPITTTEDTNWLTHPPDEAENNSSNYDSSETYYDYGSSGSYNGPRGYAGPPGPQGPRGPKGEPGKPGVEGQQGFQGPPGHVFVVPIQQSGSDKGPDVQSEALRQMLTQHMAAMRGVEGPMGLTGPPGPEGGIGPEGPKGEQGEQGEPGPPGPRGSQGPPGRQGRRGHAGRDGERGTTGPFGQKGEPGYPGSSGMPGDKGERGISGLQGEPGAPGQDGPPGDDGPPGPQGLSGELGPRGFVGPRGFPGLIGYPGIPGNEGLQGSKGATGQPGPSGPQGQPGISGPPGAPGAQGPTGIPGLQGPQGKSGISGQPGPEGVPGTPGNPGQQGSPGEVGPQGPQGMLGFPGTRGIKGDEGPRGLPGDKGDKGIRGIEGEKGDMGPKGERGLSGEVGTPGIEGPEGQKGVEGPRGETGPIGPSGEKGATGPLGPQGYPGTQGEKGDKGASGRRGRRGNKGNTGAIGNPGDRGEMGPRVSITKTSQS

Uniprot

NA

ProteinModelPortal

NA

PDB

2CZ3 E-value=1.95058e-48, Score=491

KEGG

101736673 K19721 collagen, type V/XI/XXIV/XXVII, alpha | (RefSeq) collagen alpha-1(I) chain-like

GO

GO:0005515 GO:0003824 GO:0005737 GO:0009072 GO:0015074 GO:0016817 GO:0008270 GO:0043565 GO:0016876 GO:0043039

SignalP

Position: 1 - 19, Likelihood: 0.930001

Length:

1382

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

1.60011

Exp number, first 60 AAs:

1.59958

Total prob of N-in:

0.07877

outside

1 - 1382

Pi

223.494124

Theta

172.096467

Tajima's D

0.750111

CLR

0.477218

CSRT

0.589120543972801

Interpretation

Uncertain

Sequence

Summary

Ontologies

Topology

Population Genetic Test Statistics