SGID Silkworm Genome Informatics Database
Gene
KWMTBOMO08831
Pre Gene Modal
BGIBMGA007861
Annotation
Collagen_alpha-1(XXVII)_chain_B_[Papilio_machaon]
Location
Bomo_Chr15(-):6062534-6070711      View in EpiBrowser
Location in the cell
Extracellular   Reliability : 1.518 Nuclear   Reliability : 2.039
 

Sequence

CDS
ATGCGTCTTTCGTCTTTGAAAAATGTAACCGGCGGCGTGGCGTCGGCGCAGGTTAAGTATGGCGGCCGCGGCGTTGTTCACACCACGCGACAACTTCGTAAAATATGCGTAGATACGTTAAATCATTTAGACCCTGATATTCCTGAGTATCCCGGACGAGAAATTGTAGGTGGTTATAGGGGTCCTAGAGGACGCCGTGGTTCAGATGGGGCCCCCGGTGCTAAAGGTGATACTGGCCAACCTGGACCACCAGGACAGATAGGAGAAAGGGGACCTCAAGGAGTTGAAGGAGTGAGAGGCTTCCCGGGAGCTATAGGCCCTCCGGGAGCTGATGGCAAAGCTGGATTGCCTGGACCAACTGGAGAACGGGGCCCTACAGGTGAACCTGGTGCCCAAGGATTAATAGGACCCGTAGGAATAATGGGCCCACAAGGACCTAATGGTGACCCGGGTCCTCCAGGACCAACTGGATCTTCCGGAATACCTGGTACTCCAGGTGAGGCTGGTTCTCCGGGCGAAGCTGGTAAAGAAGGTCCGCCTGGACCTTCAGGCCCTGAAGGAAAACAAGGACCCGTGGGCCCGTCTGGACCTCAAGGACCCCAAGGAGATCCTGGTTTACCAGGAACACCGGGAAATGCCGGAAGCAAAGGAGATTTAGGTCCACCTGGACCCCCTGGAATAAGAGGTGATAAAGGAGAGCCCGGCGAACCCGGTCATGAAGGTAATGCAGGACCTCAAGGACGTGAAGGACCGCGAGGATTTACAGGCCCAGGTGGTCAAAAAGGCGAAATTGGTGAACAGGGACCAATAGGGCCAATCGGGCGTGATGGCTTAACTGGCCCACGAGGCTTACCAGGAGTTCCAGGCCCTGTAGGTCCTCCTGGAGAAGATGGTGACAAAGGAGAAGCAGGGCCACCCGGAGAAAAAGGTTTTAAAGGTGCCACGGGCGAATCGGGTCCTCAAGGGGCACCTGGCATTCAAGGTCTTCGTGGAGAAGTTGGTCCAGTTGGTCTTCCAGGAGAAAAGGGACCTCCGGGTGATATTGGACTTCCTGGTTCTCCTGGTATCGACGGAACACGTGGACCTCCGGGACCAATTGGTCCTACAGGACTTCAAGGAATCAAAGGACAACAGGGTCCAAAAGGAGACGCTGGTGACATAGGTCCAGTTGGCGCCACCGGCCAGCCGGGTGCAACAGGGCCGCCGGGCCGACGTGGCGCTAAAGGTATAGCAGGTGAGCCTGGTCCACGTGGGCCAGAAGGACAACAAGGAGAATTGGGCAGTCCAGGACCAACGGGCCAACCAGGGCCATCGGGCCCTGAAGGAAAACAAGGGCCAACTGGACCAGTAGGACCTAAGGGTGATGACGGGTCAGTGGGCTTGCAAGGAGAACCAGGACCTAAAGGTTTACCTGGCCCGGAAGGCCCCAAAGGCGACAACGGACCTGCCGGCTTACCAGGTGAACGAGGTGAACCTGGACCTTCAGGTATCAAGGGTGAACCCGGAACTGAAGGTCCCGAGGGTAGTACTGGTCCACCAGGGCCACCCGGACCTGTGGGACCAACAGGAAAACCTGGCGAAAGTGGGATGCCCGGTAGTCCTGGCTCCGAGGGTCCTGCAGGTCTACAGGGTAGTCCTGGATTAGCCGGGGAAAAAGGCGATGTTGGAGCTAAAGGAGCTCAAGGTGAACCTGGTCCGAATGGTCCACCAGGACCTCCCGGTCCAGAAGGACAACGAGGTATTAGAGGATCACCAGGACCTAATGGCGAAGTTGGAGCACCAGGAGTAATGGGTCCATCGGGACCTTCTGGAAAGGCTGGGCCACCTGGAGCTCCGGGTATCAGAGGTGAAAAGGGAGACAGAGGACCTAAAGGGCATATCGGAAATACTGGGCCTATGGGCCTGAAAGGAGATCAAGGCGAAGTCGGAAAAACAGGAGCACCCGGCCCAATGGGTCCATCAGGCCCAAAGGGCGATAATGGACCCATAGGGCCACCAGGGCAAAAAGGCGATACGGGCCCGATTGGTCTTACAGGACCTGAGGGTCCTCTAGGACCGAAAGGCCAGACAGGACCGGAGGGCCGTCCTGGATTACCAGGACCACCAGGTGCACCAGGTCCACCCGGACCCCCCGCACCAGCCCCACAAATTCCTCAACAACTTTTATCATCTTATAGAAGAAAACGCAGTATTGACTCCATTTCCTCCTCTATTGAAACCGGCACTGAAGACAGTTTTGATGACGAGGAAGACATCAACTGGGTGAAAGAAATAATGTCAGGAATAATTGTTGCTCGCAGCACTCTGGAAACCGTTAAAAATCCAAGAGGAACTAGAACCAATCCAGCACTGTCGTGCAAAGACTTAAAGACGTCATTTCCTAATATTACTGACGGCGATTATTGGATTGATGCTAGAGGTGGAAGCGGGAGCGGACGTCCAATCAAAGCCTACTGCAAAGGATATAGTACTTGTTTATATCCGGATGTTAAAGAACAAAGCGTTTACAACAATGACGCCAATACCCATAAGTTTTCACAGATGAAAAACGGTTTCCGGATATCTTATGACGCAGAAGGATCTGGAGCCATACAATTGCGTTTCCTGAGGCTACTTTCAAAAGGAGCCCGTCAAAACTTCTCGTATGTTTGCGTAAATACCGAAATACAACAAAGATCTGATATCCCGATGGATTTGGTAAGAGCTAGCAATATCAAACTGTACGGTTTCAACTCTGCTGAATTTAGGGAACCCCAAATTGTCAAAGACGAATGTAAGGATGGATCAGGCGAGATCGTATTGGAGATTAAAACGTCAAGGACGGAAAGACTTCCGATAACAGACTTCCAACCGCTAAGCTTTAATGAAGCAAAACATCAATTTGGCTTCAAAGTTGGACCTATTTGTTTCACGTAA
Protein
MRLSSLKNVTGGVASAQVKYGGRGVVHTTRQLRKICVDTLNHLDPDIPEYPGREIVGGYRGPRGRRGSDGAPGAKGDTGQPGPPGQIGERGPQGVEGVRGFPGAIGPPGADGKAGLPGPTGERGPTGEPGAQGLIGPVGIMGPQGPNGDPGPPGPTGSSGIPGTPGEAGSPGEAGKEGPPGPSGPEGKQGPVGPSGPQGPQGDPGLPGTPGNAGSKGDLGPPGPPGIRGDKGEPGEPGHEGNAGPQGREGPRGFTGPGGQKGEIGEQGPIGPIGRDGLTGPRGLPGVPGPVGPPGEDGDKGEAGPPGEKGFKGATGESGPQGAPGIQGLRGEVGPVGLPGEKGPPGDIGLPGSPGIDGTRGPPGPIGPTGLQGIKGQQGPKGDAGDIGPVGATGQPGATGPPGRRGAKGIAGEPGPRGPEGQQGELGSPGPTGQPGPSGPEGKQGPTGPVGPKGDDGSVGLQGEPGPKGLPGPEGPKGDNGPAGLPGERGEPGPSGIKGEPGTEGPEGSTGPPGPPGPVGPTGKPGESGMPGSPGSEGPAGLQGSPGLAGEKGDVGAKGAQGEPGPNGPPGPPGPEGQRGIRGSPGPNGEVGAPGVMGPSGPSGKAGPPGAPGIRGEKGDRGPKGHIGNTGPMGLKGDQGEVGKTGAPGPMGPSGPKGDNGPIGPPGQKGDTGPIGLTGPEGPLGPKGQTGPEGRPGLPGPPGAPGPPGPPAPAPQIPQQLLSSYRRKRSIDSISSSIETGTEDSFDDEEDINWVKEIMSGIIVARSTLETVKNPRGTRTNPALSCKDLKTSFPNITDGDYWIDARGGSGSGRPIKAYCKGYSTCLYPDVKEQSVYNNDANTHKFSQMKNGFRISYDAEGSGAIQLRFLRLLSKGARQNFSYVCVNTEIQQRSDIPMDLVRASNIKLYGFNSAEFREPQIVKDECKDGSGEIVLEIKTSRTERLPITDFQPLSFNEAKHQFGFKVGPICFT

Summary

Uniprot
J9KLB3   A0A2H8U047   A0A2S2NMT1   A0A146LGP8  
Pubmed
26823975   
EMBL
ABLF02026985    GFXV01007734    MBW19539.1    GGMR01005880    MBY18499.1    GDHC01011328    + More
JAQ07301.1   
Proteomes
UP000007819   
Pfam
PF01391   Collagen        + More
PF01410   COLFI
Interpro
IPR000885   Fib_collagen_C        + More
IPR008160   Collagen       
IPR001791   Laminin_G       
IPR013320   ConA-like_dom_sf       
SUPFAM
SSF49899   SSF49899       
ProteinModelPortal
J9KLB3   A0A2H8U047   A0A2S2NMT1   A0A146LGP8  
PDB
5K31     E-value=1.06736e-23,     Score=276

Ontologies

KEGG
101736673    K19721 collagen, type V/XI/XXIV/XXVII, alpha | (RefSeq) collagen alpha-1(I) chain-like
GO
GO:0005201   GO:0005581   GO:0046872   GO:0006183   GO:0006228   GO:0006241   GO:0016817   GO:0008270   GO:0043565   GO:0016876   GO:0043039  

Topology

Length:
971
Number of predicted TMHs:
0
Exp number of AAs in TMHs:
0.000610000000000001
Exp number, first 60 AAs:
0.00043
Total prob of N-in:
0.00003
outside
1  -  971
 
 

Population Genetic Test Statistics

Pi
277.368455
Theta
214.47916
Tajima's D
0.552019
CLR
0.302319
CSRT
0.534773261336933
Interpretation
Uncertain
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