Gene

KWMTBOMO08826

Annotation

PREDICTED:_probable_nucleoporin_Nup54_isoform_X2_[Bombyx_mori]

Location

Bomo_Chr15(+):5976202-5991868      View in EpiBrowser

Full name

Probable nucleoporin Nup54      

Location in the cell

Mitochondrial   Reliability : 1.326 Nuclear   Reliability : 1.219

CDS

ATGATTTTTAACAAAAGCGAACAAGAAATTAAGAATAACCAACAAGGTTTAATTACATCACTACAAGGCTTACTAGGGAACAAACCGAACTTAGCTGTCAATGTTGATTCTGTCAAAGCCGTGGCAGATGACAAAAGTCAGGTGGTAATATACGTGGTGGATAAGGCCGCGAACAATTCTCACGTTTCTGCGTCAGAGCTAGCGAATTTCTTAAACGCCGGCAACGCTAAGAACGCCCTGAGCAGCGCCGGCTGTTCTGCCGTGAGCGCCGTCACCGCACCGACGCCGCAGATGCTGCAGCAGTACCTTCAAACTCCTCCACCAGGCATGGATATAAGATTATGGAAACAAGCTCAAGCCGACAAACCGGACTCTGCTAATTACATTCCAGTGCCAATTATTGGATTCTCAGAGATAAAGTTCCGAGCGCAGTGCCAGGCGGAGCAGGGCCGGCTGCAGGCGAGCTGGCTGCGTCGCGCGGAGGACACGCTGTGCGAGCTGCGCACGCGCCGCGCCGCCGCCGCCGCCCGCCTGGCGCGCCTCTCCGCCGCTCTGCACGCGCTGCGACATACGCTCCTGCAGATTGTCGCGCGTCAAGAAGCCGTCGGTCGTGTTGGTGCAGCTCTTAGTCCCGAAGAGGAAGCGACCCGAGCTCGACTGCACGAACTCGCTTCACAATTAGCAGCGCCTCCACTTTCAAATGGGCGTTTGAACGAGTTGCTGTGCGCAGTGCGTTTGCAACGTAGCGCCAGTGCGGGAATGGCGCATGAACGATATCAATTAGACCCAGGTGCACAAGAAGACGTGAAGCAGTTCTTGACCCTGCAACAGAAGGGCATGGCGCATCTATTGGACACGGCGAGGAAGGACCTTGCCGCACTCAACACCATCGCCGAAGGGATGTCGCAACTTGTTCGAACTTAG

Protein

MIFNKSEQEIKNNQQGLITSLQGLLGNKPNLAVNVDSVKAVADDKSQVVIYVVDKAANNSHVSASELANFLNAGNAKNALSSAGCSAVSAVTAPTPQMLQQYLQTPPPGMDIRLWKQAQADKPDSANYIPVPIIGFSEIKFRAQCQAEQGRLQASWLRRAEDTLCELRTRRAAAAARLARLSAALHALRHTLLQIVARQEAVGRVGAALSPEEEATRARLHELASQLAAPPLSNGRLNELLCAVRLQRSASAGMAHERYQLDPGAQEDVKQFLTLQQKGMAHLLDTARKDLAALNTIAEGMSQLVRT

Description

Component of the nuclear pore complex (NPC), a complex required for the trafficking across the nuclear envelope. Essential for the nuclear import of nuclear localization signal (NLS)-containing proteins in an importin alpha/importin beta-dependent manner.

Similarity

Belongs to the NUP54 family.

Keywords

Complete proteome   mRNA transport   Nuclear pore complex   Nucleus   Protein transport   Reference proteome   Repeat   Translocation   Transport  

Feature

chain  Probable nucleoporin Nup54

Uniprot

A0A2H1VK63   A0A437AZ91   A0A2A4J557   A0A212FEI0   A0A194PRF6   A0A194QMH5   + More
A0A2J7PC86   A0A067QVF0   A0A0L0CCS3   A0A2M3ZI33   A0A1I8N1K9   T1PHR8   A0A1I8ME65   A0A1I8ME63   A0A0T6B0E2   A0A2M4ARV7   A0A2M4AQ66   A0A034WF07   A0A0A1WKH5   A0A0K8VDI0   A0A1Q3F569   A0A1I8Q4V0   A0A1I8Q4X3   A0A1S4FDT0   Q175V1   B0WT58   W5JIL1   A0A182P9M9   A0A182GSI2   W8C2L7   A0A182FDI3   A0A182GBP0   A0A2M4BI02   A0A182QB03   A2RVF6   A0A182UH09   A0A182I1P2   Q7Q657   A0A182JXH7   A0A084W421   A0A182IPA6   A0A182WB09   A0A182NKD9   A0A1A9W842   D3TPD1   A0A182KPD1   A0A182XM25   A0A1B0AGX9   A0A182UMH6   A0A182R740   A0A1B0FDV2   A0A182YPL5   A0A1A9UFB0   A0A336MVN6   A0A336MLK1   A0A1J1IEM8   A0A0C9RPD2   A0A1A9YKI4   A0A1B0C1U5   A0A1B6DMA8   A0A151XB18   A0A195DI73   Q9V6B9   B3MCK8   Q292P1   B4GD06   B3NS08   A0A158NQP2   A0A195BDB1   A0A195FSQ9   B4P5A1   A0A232F8H4   E1ZXB9   A0A1W4U5V6   F4WBW7   A0A3B0JNI2   B4HPI8   B4KRU5   A0A1L8DXF7   B4QCW4   A0A3L8E533   E2BM95   A0A026WLE2   A0A2A3EFU0   A0A1Y1NFF2   A0A088ACG9   A0A0N0BKF2   A0A0M4E5M0   B4LLR9   A0A0A1XSF1   A0A154PAG5   B4J709   C4A119   A0A0L7R5H0   A0A139WN91   D6WAW7   C3ZWP7  

Pubmed

22118469    26354079    24845553    26108605    25315136    25348373    + More
25830018    17510324    20920257    23761445    26483478    24495485    12364791    14747013    17210077    24438588    20353571    20966253    25244985    10731132    12537572    12537569    17682050    17994087    15632085    21347285    17550304    28648823    20798317    21719571    22936249    30249741    24508170    28004739    18563158    18362917    19820115   

EMBL

ODYU01003012    SOQ41239.1    RSAL01000249    RVE43520.1    NWSH01002960    PCG67215.1    + More
AGBW02008937    OWR52123.1    KQ459596    KPI95538.1    KQ461195    KPJ06727.1    NEVH01027067    PNF13949.1    KK853205    KDR09848.1    JRES01000678    KNC29259.1    GGFM01007420    MBW28171.1    KA648362    AFP62991.1    LJIG01022444    KRT80581.1    GGFK01010007    MBW43328.1    GGFK01009592    MBW42913.1    GAKP01004801    JAC54151.1    GBXI01014975    JAC99316.1    GDHF01015315    JAI36999.1    GFDL01012340    JAV22705.1    CH477395    EAT41854.1    DS232080    EDS34201.1    ADMH02001412    ETN62634.1    JXUM01084669    JXUM01084670    JXUM01084671    JXUM01084672    JXUM01084673    KQ563453    KXJ73809.1    GAMC01000388    JAC06168.1    JXUM01009362    KQ560281    KXJ83328.1    GGFJ01003297    MBW52438.1    AXCN02000404    BT029947    ABM92821.1    APCN01000070    AAAB01008960    EAA11665.4    ATLV01020271    KE525297    KFB44965.1    EZ423283    ADD19559.1    CCAG010000539    CCAG010000540    UFQS01002611    UFQT01002611    SSX14354.1    SSX33765.1    UFQT01001300    SSX29899.1    CVRI01000044    CRK96889.1    GBYB01009026    JAG78793.1    JXJN01024174    GEDC01029260    GEDC01010510    GEDC01001517    JAS08038.1    JAS26788.1    JAS35781.1    KQ982335    KYQ57565.1    KQ980824    KYN12541.1    AE013599    AY051713    CH902619    EDV36242.1    CM000071    EAL24821.1    CH479181    EDW31544.1    CH954179    EDV56310.1    ADTU01023456    KQ976511    KYM82548.1    KQ981280    KYN43483.1    CM000158    EDW90763.1    KRJ99460.1    NNAY01000688    OXU26965.1    GL435030    EFN74209.1    GL888066    EGI68395.1    OUUW01000001    SPP74211.1    CH480816    EDW47572.1    CH933808    EDW09386.1    GFDF01002963    JAV11121.1    CM000362    CM002911    EDX06775.1    KMY93202.1    QOIP01000001    RLU27485.1    GL449158    EFN83221.1    KK107154    EZA56860.1    KZ288256    PBC30590.1    GEZM01003617    GEZM01003616    JAV96673.1    KQ435702    KOX80341.1    CP012524    ALC41604.1    CH940648    EDW61942.1    GBXI01000058    JAD14234.1    KQ434845    KZC08218.1    CH916367    EDW00997.1    GG666844    EEN41513.1    KQ414654    KOC66006.1    KQ971312    KYB29364.1    EEZ98695.2    GG666702    EEN43029.1   

Proteomes

UP000283053    UP000218220    UP000007151    UP000053268    UP000053240    UP000235965    + More
UP000027135    UP000037069    UP000095301    UP000095300    UP000008820    UP000002320    UP000000673    UP000075885    UP000069940    UP000249989    UP000069272    UP000075886    UP000075902    UP000075840    UP000007062    UP000075881    UP000030765    UP000075880    UP000075920    UP000075884    UP000091820    UP000075882    UP000076407    UP000092445    UP000075903    UP000075900    UP000092444    UP000076408    UP000078200    UP000183832    UP000092443    UP000092460    UP000075809    UP000078492    UP000000803    UP000007801    UP000001819    UP000008744    UP000008711    UP000005205    UP000078540    UP000078541    UP000002282    UP000215335    UP000000311    UP000192221    UP000007755    UP000268350    UP000001292    UP000009192    UP000000304    UP000279307    UP000008237    UP000053097    UP000242457    UP000005203    UP000053105    UP000092553    UP000008792    UP000076502    UP000001070    UP000001554    UP000053825    UP000007266   

PRIDE

A2RVF6    Q9V6B9   

Pfam

PF18437   Nup54_C        + More
PF13874   Nup54

Interpro

IPR040985   Nup54_C        + More
IPR025712   Nup54_alpha-helical_dom       
IPR024864   Nup54/Nup57/Nup44       
IPR036322   WD40_repeat_dom_sf       
IPR017986   WD40_repeat_dom       
IPR015943   WD40/YVTN_repeat-like_dom_sf       
IPR001680   WD40_repeat       

SUPFAM

SSF50978   SSF50978       

Gene 3D

2.130.10.10    

ProteinModelPortal

A0A2H1VK63   A0A437AZ91   A0A2A4J557   A0A212FEI0   A0A194PRF6   A0A194QMH5   + More
A0A2J7PC86   A0A067QVF0   A0A0L0CCS3   A0A2M3ZI33   A0A1I8N1K9   T1PHR8   A0A1I8ME65   A0A1I8ME63   A0A0T6B0E2   A0A2M4ARV7   A0A2M4AQ66   A0A034WF07   A0A0A1WKH5   A0A0K8VDI0   A0A1Q3F569   A0A1I8Q4V0   A0A1I8Q4X3   A0A1S4FDT0   Q175V1   B0WT58   W5JIL1   A0A182P9M9   A0A182GSI2   W8C2L7   A0A182FDI3   A0A182GBP0   A0A2M4BI02   A0A182QB03   A2RVF6   A0A182UH09   A0A182I1P2   Q7Q657   A0A182JXH7   A0A084W421   A0A182IPA6   A0A182WB09   A0A182NKD9   A0A1A9W842   D3TPD1   A0A182KPD1   A0A182XM25   A0A1B0AGX9   A0A182UMH6   A0A182R740   A0A1B0FDV2   A0A182YPL5   A0A1A9UFB0   A0A336MVN6   A0A336MLK1   A0A1J1IEM8   A0A0C9RPD2   A0A1A9YKI4   A0A1B0C1U5   A0A1B6DMA8   A0A151XB18   A0A195DI73   Q9V6B9   B3MCK8   Q292P1   B4GD06   B3NS08   A0A158NQP2   A0A195BDB1   A0A195FSQ9   B4P5A1   A0A232F8H4   E1ZXB9   A0A1W4U5V6   F4WBW7   A0A3B0JNI2   B4HPI8   B4KRU5   A0A1L8DXF7   B4QCW4   A0A3L8E533   E2BM95   A0A026WLE2   A0A2A3EFU0   A0A1Y1NFF2   A0A088ACG9   A0A0N0BKF2   A0A0M4E5M0   B4LLR9   A0A0A1XSF1   A0A154PAG5   B4J709   C4A119   A0A0L7R5H0   A0A139WN91   D6WAW7   C3ZWP7  

PDB

5IJO     E-value=1.24633e-42,     Score=434

KEGG

101745770    K14308 nuclear pore complex protein Nup54 | (RefSeq) probable nucleoporin Nup54

PATHWAY

03013    RNA transport - Bombyx mori (domestic silkworm)

GO

GO:0005643   GO:0006607   GO:0017056   GO:0036228   GO:0044613   GO:0006999   GO:0006605   GO:0006913   GO:0006606   GO:0051028  

PANTHER

PTHR13000  

Subcellular location

  

Length:

307

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.01093

Exp number, first 60 AAs:

0

Total prob of N-in:

0.02813

outside

1  -  307

 

 

Pi

203.188613

Theta

165.213362

Tajima's D

0.958176

CLR

0

CSRT

0.651567421628919

Interpretation

Uncertain