Silkworm Genome Informatics Database

Gene

KWMTBOMO08815 Validated by peptides from experiments

Pre Gene Modal

BGIBMGA007869

Annotation

PREDICTED:_ATP-binding_cassette_sub-family_F_member_1_[Amyelois_transitella]

Location

Bomo_Chr15(-):5874997-5889601 View in EpiBrowser

Location in the cell

Nuclear Reliability : 4.312

CDS

ATGTCGAAAAAGAAAGGAAACAAAAAAAATCAAGATTTAGATGACGATTTCGATGAAAAGCCTTCAGTCGTGAATGAAAAGACAGAACTAACCTCTAAAAATAAAGGAAAAGGCAAGAAGAAGAATAAAACTGGAGATTGTAGCGATAGCGACGAAGAGAACATAAAGAAAGTTCCAGTTTCAGACGAAGAGGACGTCCCGAAACCGGCTGCCAAAAAGTCACAAAAGAAAGGAAAGAGTAAAAAAAAGGGTGCTGATAGGTCAGATGATGAAGAGGATGATAACAAATCCATTATCAACAATACAACAAATGTTTCATCAAAGCCAGCTAAACTTGCAAAAAAGAAAAAAGGGAAAGGTAAGAAAGATGATGATTGGTCTTCGGAAGGCAGTGATGTAGATCTCAAAATGGCTTCAGATGAAGATGTTGCAAAGCCTGTTGGTAAGAAGAAAACCAAGGGTAAAAAGGATGACTTACCTGATGAAGACAGTGACAAAGAATTGAAAATTGAAGCTTCAGAAGATGATGAATTAGTCATACCTTTAGTAAAAAGTAAAGGAAAACATAAAAAGAAGAATAATATGGATGATATTGAGGCAGAGTTAAAGAAATTTGAAATAAAAGATCCAGAGCATGAAGAGAAATCGCTAAAGGGCAAAGATAAAAAGAAAAAGCGACAAGAAGATGAATCCATTGTTGAAGAAAAAGATGACGATAAGGTGACAGAATTGCCTTCAAAAGAAAAAGAAGATTCTGTAGAAAAGAAATTGAGCCACAAAGAAAAGAAGAAACTGAAGAAACAGCAGGAGTATGAGAAACAGATGGAATTGATGACAAAAAAAGGTGGTCAGGGGCACAGTGAACTTGATGCAAACTTCACGGTCAGTCAGGCACAGAAAACAGCTGGTCAAATGGCAGCCCTAGAAAACGCAGTAGACATAAAAGTCGAAAACTTCTCGATCAGTGCGAAAGGAAAAGATTTATTCTTGAACGCGAATCTCTTGATTGCCAACGGACGTCGATATGGTTTGGTCGGGCCTAATGGACACGGAAAAACAACTTTATTGAGGCATTTAGCACAACGCGCCTTCCCGCTCCCGCCCCATATAGACATACTGTTGTGCGAGCAAGAGGTGACGGCCAGTGATATGTCAGCTGTAGATACGCTCCTCGAATCTGATGTTAAGAGAACCGAATTACTAAAGGAATGCAAAGAGCTTGAAGCTGAAACAGAGAAAGGCAACCTCAGCAAACAGGATAGACTTAATGAGGTTTACGCAGAACTGAAAGCGATAGGAGCGGACGCGGCTGAGCCTCGAGCGCGCCGTATCCTCGCGGGTCTGGGCTTCAGCCGTGAGATGCAGGATCGACCCACCAAGAACTTCTCCGGTGGATGGAGAATGAGAGTTTCGCTCGCTAGAGCCCTGTACATAGAACCGACTCTGCTGTTACTAGACGAGCCTACGAACCATTTAGATCTGAACGCCGTGATCTGGTTAGACAATTACCTGCAAGGATGGAAGAAGACGTTACTAGTGGTATCTCACGATCAATCTTTCTTGGATAACGTTTGCAACGAAATCATACATTTAGATCAACAGAAATTGTTTTATTACAAAGGCAATTATTCGATGTTCAAGAAAATGTACGCACAGAAACGAAAGGAGATGATCAAGGAATATGAGAAACAAGAGAAGAGGATAAAGGAACTGAAGGCCCACGGACAGTCCAAGAAGCAAGCCGAAAAGAAGCAGAAGGATGCGTTGACGCGGAAACAGGAGAAGAACCGCAGCAAGGCGCAGCGCGAGGACGAGGACGGCGCCGCGCCCGTCGCCCTGCTGCAGCGGCCTAAGGAGTACATCGTCAAGTTCAGCTTCCCCGACCTGTCGCCGCTGCAGCCGCCCATCCTGGGACTGCACGACGTGGATTTCAACTTCCCCGGTCAGAAGCCTCTCTTCAAGGGCGTGAACTTCGGTATCGATCTTAATTCTCGTATCGCGATCGTGGGCCCCAACGGAGTCGGGAAATCGACGTTCCTGAAGCTACTCGTCGGCGAATTGACTCCTATACGCGGCGAACTGTTTAAGAACCACAGATTGAGGATAGGCAGATTCGACCAGCACTCTGGCGAGCACCTGACGGCGGAGGAGACGCCGGCGGAGTACCTGCAGCGCTTGTTCGGTCTGCAGTACGAGAAGGCGAGGAAGGCGCTCGGCACGTTCGGGCTGGCGAGCCACGCGCACATCATCAAGATGAAAGACCTCAGCGGCGGACAGAAGGCCCGCGTGGCGCTCGCCGAAATGACCCTCATGGGGCCCGACGTTATCATTCTGGATGAACCCACAAATAACTTGGACATCGAGAGTATAGACGCGTTGGCCGAAGCGATCAACGACTACAAGGGGGGCGTGGTCATAGTGTCCCACGACGAACGACTTATCAGAGAGACGGATTGCGCGCTCTACGTCATCGAAGATCAGACCATCAACGAGGTCGACGGTGACTTCGACGATTACCGTAAGGAGCTCCTCGAGAGCCTCGGGGAAACGGTCAACTCACCATCCATCATCGCTAACCAAGCAGTCCAACAATGA

Protein

MSKKKGNKKNQDLDDDFDEKPSVVNEKTELTSKNKGKGKKKNKTGDCSDSDEENIKKVPVSDEEDVPKPAAKKSQKKGKSKKKGADRSDDEEDDNKSIINNTTNVSSKPAKLAKKKKGKGKKDDDWSSEGSDVDLKMASDEDVAKPVGKKKTKGKKDDLPDEDSDKELKIEASEDDELVIPLVKSKGKHKKKNNMDDIEAELKKFEIKDPEHEEKSLKGKDKKKKRQEDESIVEEKDDDKVTELPSKEKEDSVEKKLSHKEKKKLKKQQEYEKQMELMTKKGGQGHSELDANFTVSQAQKTAGQMAALENAVDIKVENFSISAKGKDLFLNANLLIANGRRYGLVGPNGHGKTTLLRHLAQRAFPLPPHIDILLCEQEVTASDMSAVDTLLESDVKRTELLKECKELEAETEKGNLSKQDRLNEVYAELKAIGADAAEPRARRILAGLGFSREMQDRPTKNFSGGWRMRVSLARALYIEPTLLLLDEPTNHLDLNAVIWLDNYLQGWKKTLLVVSHDQSFLDNVCNEIIHLDQQKLFYYKGNYSMFKKMYAQKRKEMIKEYEKQEKRIKELKAHGQSKKQAEKKQKDALTRKQEKNRSKAQREDEDGAAPVALLQRPKEYIVKFSFPDLSPLQPPILGLHDVDFNFPGQKPLFKGVNFGIDLNSRIAIVGPNGVGKSTFLKLLVGELTPIRGELFKNHRLRIGRFDQHSGEHLTAEETPAEYLQRLFGLQYEKARKALGTFGLASHAHIIKMKDLSGGQKARVALAEMTLMGPDVIILDEPTNNLDIESIDALAEAINDYKGGVVIVSHDERLIRETDCALYVIEDQTINEVDGDFDDYRKELLESLGETVNSPSIIANQAVQQ

Uniprot

H9JEC2 A0A2A4JHX9 A0A2W1CSI3 A0A2H4KAY1 A0A2H1WJF2 A0A3S2NM68 + More
A0A194PS01

Pubmed

19121390 28756777 26354079

EMBL

BABH01002870 BABH01002871 NWSH01001323 PCG71695.1 NHMN01024548 PZC87416.1 + More
KY484784 ASS36026.1 ODYU01009058 SOQ53200.1 RSAL01000266 RVE43267.1 KQ459596 KPI95529.1

Proteomes

UP000005204 UP000218220 UP000283053 UP000053268

PRIDE

H9JEC2

Pfam

PF00005 ABC_tran + More
PF12848 ABC_tran_Xtn

Interpro

IPR003593   AAA+_ATPase        + More
IPR032781   ABC_tran_Xtn
IPR017871   ABC_transporter_CS
IPR003439   ABC_transporter-like
IPR027417   P-loop_NTPase

SUPFAM

SSF52540 SSF52540

ProteinModelPortal

H9JEC2 A0A2A4JHX9 A0A2W1CSI3 A0A2H4KAY1 A0A2H1WJF2 A0A3S2NM68 + More
A0A194PS01

PDB

5ZXD E-value=0, Score=1648

KEGG

101746856 K06184 ATP-binding cassette, subfamily F, member 1 | (RefSeq) ATP-binding cassette sub-family F memb

GO

GO:0005524 GO:0016887 GO:0043565 GO:0006412 GO:0008097 GO:0016817 GO:0008270 GO:0016876 GO:0043039

Length:

864

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.00112

Exp number, first 60 AAs:

0

Total prob of N-in:

0.00037

outside

1 - 864

Pi

213.550416

Theta

155.73891

Tajima's D

1.384097

CLR

0.385062

CSRT

0.761461926903655

Interpretation

Uncertain

Source	Sequence	Identity	Evalue
31250652	QADEPTNNLDIESIDALAEAINDYK	100.00	5e-09
31250652	VSVEVDARYVEHTK	100.00	1e-08
27530593	KFDFHNNIDSDEDDFLQVKT	100.00	0.003
27530593	KFDFHNNIDSDEDDFLQVKT	100.00	0.003

Sequence

Summary

Ontologies

Topology

Population Genetic Test Statistics