Gene

KWMTBOMO08814

Annotation

PREDICTED:_dynein_light_chain_1?_axonemal-like_[Amyelois_transitella]

Location

Bomo_Chr15(+):5853952-5857087      View in EpiBrowser

Location in the cell

Cytoplasmic   Reliability : 1.799 Mitochondrial   Reliability : 1.199

CDS

ATGGCTTTGAAACCTACTACCTGCAAAGAAGCAATAGCTCGTTGGGAAAAACAAAAGGGCGAATCAGCAGCAGATGCGAAAGTTATAGAACTTCAATTTCAGTGGCCTCCAATTGAGAAAATGGATGGCGCGCTTTCCACTCTAGTGAGTTGCGAAAAATTAAGCTTATCGTCCAATATGATCGATAAAATAGCCGGGATTGCGGGAATGAGAAATCTTAAGATATTGTCTCTTGGAAGAAACTACATAAAGTCATTGTCAGGCGTGGAAACTGTGGCAGATAGCCTTGAAGAGCTATGGATCAGCTACAATCCCATCGACAAGCTGAAAGGTATTGGAGCACTAAAGAATCTCCGCGTCCTATATATGGCCAATAACGCTGTCAAGGAATGGGTGGAATTCAACAGATTACAGGAGTGTCCGGCGCTACGAGACTTAGTATTTACTGGCAATCCCATATGCGAAAATCAACCGGACATCGATACATGGCGCGCTCAGGCAGCGAACAGATTGCAACAAATTATAAAACTTGACGGCATACCGATTCTTAGAGATTAA

Protein

MALKPTTCKEAIARWEKQKGESAADAKVIELQFQWPPIEKMDGALSTLVSCEKLSLSSNMIDKIAGIAGMRNLKILSLGRNYIKSLSGVETVADSLEELWISYNPIDKLKGIGALKNLRVLYMANNAVKEWVEFNRLQECPALRDLVFTGNPICENQPDIDTWRAQAANRLQQIIKLDGIPILRD

Uniprot

A0A3S2LT45   A0A194QT50   A0A194PRE6   A0A2A4JI11   A0A2H1WJF6   A0A212F3Q7   + More
K7IQF1   A0A310SAV3   A0A026VWJ1   A0A0N1PK27   A0A1B6FSZ3   A0A0L7R2X4   A0A087ZUP2   A0A1B0GQJ4   A0A1A9YBJ8   A0A0J7L1K8   E2AP37   A0A1B0B6H1   A0A2A3E6K9   A0A0N1IAX3   A0A195D8M2   A0A2J7PR94   A0A1B6H9S6   A0A1J1IJ68   A0A158P121   F4WBH0   A0A310SRH2   D6WR95   A0A0L7QNN7   E9IBZ7   A0A232F3R2   A0A151WWD0   A0A182GQE9   A0A3S2LXD1   A0A087ZZH0   A0A2A3EP63   Q17H43   A0A232F431   A0A1I8M3I4   B0WNF7   K7IUE2   A0A195C3N9   A0A182JQ70   A0A182FAF9   A0A084WPB4   A0A1I8P7Z1   A0A2A4IUC3   W5JSX5   C1LFH9   A0A182Y901   A0A182NCV6   T1HVM5   A0A182XF74   A0A182KZS7   Q7QA64   A0A182HVP5   A0A195FQA0   A0A182SJ34   A0A2H1V0U4   F4WCG6   A0A182RI19   A0A182W390   A0A182QHY7   A0A195B3N5   A0A067RJ51   A0A151XK78   R7U8S6   Q17FZ4   A0A034WSE6   A0A195ELT7   J3JWL3   A0A267GPI9   A7RP35   E3TDT8   A0A2D0RLD6   A0A195DKJ8   A0A1B6L624   A0A336L7V8   G4VT99   A0A195FVH0   A0A3M7RZC5   B4LNV1   E0W4A5   B0WWM7   A0A195B6J8   W5JDK4   A0A182F2M0   A0A182NB45   A0A074ZGJ7   U4UCQ5   A0A1A9WA46   B4J5U1   A0A3B5K5A3   A0A3B5KCC3   H3CI66   A0A1Y1M8L2   A1Z7U2   B4P414   B4HSR7   B3N7H4  

Pubmed

26354079    22118469    20075255    24508170    20798317    21347285    + More
21719571    18362917    19820115    21282665    28648823    26483478    17510324    25315136    24438588    20920257    23761445    25244985    20966253    12364791    14747013    17210077    24845553    23254933    25348373    22516182    17615350    20634964    22253936    30375419    17994087    20566863    23537049    21551351    15496914    28004739    10731132    12537568    12537572    12537573    12537574    16110336    17569856    17569867    17550304   

EMBL

RSAL01000266    RVE43266.1    KQ461195    KPJ06716.1    KQ459596    KPI95528.1    + More
NWSH01001323    PCG71697.1    ODYU01009058    SOQ53201.1    AGBW02010513    OWR48361.1    KQ761906    OAD56454.1    KK107921    EZA47204.1    LADJ01064520    KPJ21653.1    GECZ01016464    GECZ01016180    JAS53305.1    JAS53589.1    KQ414663    KOC65227.1    AJVK01017152    LBMM01001340    KMQ96483.1    GL441439    EFN64869.1    JXJN01009096    KZ288351    PBC27348.1    KQ458725    KPJ05372.1    KQ976749    KYN08774.1    NEVH01022633    PNF18839.1    GECU01036324    JAS71382.1    CVRI01000053    CRK99810.1    ADTU01006080    GL888063    EGI68449.1    KQ761246    OAD57931.1    KQ971354    EFA07038.1    KQ414855    KOC60101.1    GL762140    EFZ21910.1    NNAY01001054    OXU25325.1    KQ982691    KYQ52212.1    JXUM01080395    KQ563183    KXJ74315.1    RSAL01000131    RVE46425.1    KZ288212    PBC32821.1    CH477253    EAT45970.1    NNAY01001004    OXU25521.1    DS232010    EDS31611.1    AAZX01013097    KQ978292    KYM95479.1    ATLV01025015    KE525367    KFB52058.1    NWSH01007082    PCG63096.1    ADMH02000180    ETN67467.1    FN317727    CAX73457.1    ACPB03010729    AAAB01008898    EAA09125.4    APCN01005809    KQ981305    KYN42765.1    ODYU01000153    SOQ34439.1    GL888070    EGI68146.1    AXCN02001207    KQ976641    KYM78809.1    KK852653    KDR19353.1    KQ982052    KYQ60688.1    AMQN01001949    KB306824    ELT99520.1    CH477267    EAT45480.1    GAKP01000446    JAC58506.1    KQ978739    KYN28844.1    BT127631    AEE62593.1    NIVC01000900    NIVC01000346    NIVC01000211    PAA75139.1    PAA85120.1    PAA87941.1    DS469524    EDO46786.1    GU588518    ADO28474.1    KQ980765    KYN13362.1    GEBQ01020867    JAT19110.1    UFQS01001948    UFQT01000542    UFQT01001948    SSX12767.1    SSX25108.1    HE601631    CCD83033.1    KQ981272    KYN43859.1    REGN01002352    RNA28705.1    CH940648    EDW61120.1    DS235886    EEB20461.1    DS232149    EDS36119.1    KQ976582    KYM79809.1    ADMH02001848    ETN60889.1    KL596750    KER26333.1    KB632299    ERL91739.1    CH916367    EDW01867.1    GEZM01037152    JAV82129.1    AE013599    AAF58946.1    CM000157    EDW89497.1    CH480816    EDW47094.1    CH954177    EDV59379.1   

Proteomes

UP000283053    UP000053240    UP000053268    UP000218220    UP000007151    UP000002358    + More
UP000053097    UP000053825    UP000005203    UP000092462    UP000092443    UP000036403    UP000000311    UP000092460    UP000242457    UP000078542    UP000235965    UP000183832    UP000005205    UP000007755    UP000007266    UP000215335    UP000075809    UP000069940    UP000249989    UP000008820    UP000095301    UP000002320    UP000075881    UP000069272    UP000030765    UP000095300    UP000000673    UP000076408    UP000075884    UP000015103    UP000076407    UP000075882    UP000007062    UP000075840    UP000078541    UP000075901    UP000075900    UP000075920    UP000075886    UP000078540    UP000027135    UP000014760    UP000078492    UP000215902    UP000001593    UP000221080    UP000008854    UP000276133    UP000008792    UP000009046    UP000030742    UP000091820    UP000001070    UP000005226    UP000007303    UP000000803    UP000002282    UP000001292    UP000008711   

PRIDE

A1Z7U2   

Pfam

PF12799   LRR_4        + More
PF01603   B56
PF00071   Ras

Interpro

IPR001611   Leu-rich_rpt        + More
IPR025875   Leu-rich_rpt_4       
IPR032675   LRR_dom_sf       
IPR011989   ARM-like       
IPR002554   PP2A_B56       
IPR016024   ARM-type_fold       
IPR020849   Small_GTPase_Ras-type       
IPR027417   P-loop_NTPase       
IPR001806   Small_GTPase       

SUPFAM

SSF48371   SSF48371        + More
SSF52540   SSF52540       

Gene 3D

3.80.10.10     1.25.10.10    

ProteinModelPortal

A0A3S2LT45   A0A194QT50   A0A194PRE6   A0A2A4JI11   A0A2H1WJF6   A0A212F3Q7   + More
K7IQF1   A0A310SAV3   A0A026VWJ1   A0A0N1PK27   A0A1B6FSZ3   A0A0L7R2X4   A0A087ZUP2   A0A1B0GQJ4   A0A1A9YBJ8   A0A0J7L1K8   E2AP37   A0A1B0B6H1   A0A2A3E6K9   A0A0N1IAX3   A0A195D8M2   A0A2J7PR94   A0A1B6H9S6   A0A1J1IJ68   A0A158P121   F4WBH0   A0A310SRH2   D6WR95   A0A0L7QNN7   E9IBZ7   A0A232F3R2   A0A151WWD0   A0A182GQE9   A0A3S2LXD1   A0A087ZZH0   A0A2A3EP63   Q17H43   A0A232F431   A0A1I8M3I4   B0WNF7   K7IUE2   A0A195C3N9   A0A182JQ70   A0A182FAF9   A0A084WPB4   A0A1I8P7Z1   A0A2A4IUC3   W5JSX5   C1LFH9   A0A182Y901   A0A182NCV6   T1HVM5   A0A182XF74   A0A182KZS7   Q7QA64   A0A182HVP5   A0A195FQA0   A0A182SJ34   A0A2H1V0U4   F4WCG6   A0A182RI19   A0A182W390   A0A182QHY7   A0A195B3N5   A0A067RJ51   A0A151XK78   R7U8S6   Q17FZ4   A0A034WSE6   A0A195ELT7   J3JWL3   A0A267GPI9   A7RP35   E3TDT8   A0A2D0RLD6   A0A195DKJ8   A0A1B6L624   A0A336L7V8   G4VT99   A0A195FVH0   A0A3M7RZC5   B4LNV1   E0W4A5   B0WWM7   A0A195B6J8   W5JDK4   A0A182F2M0   A0A182NB45   A0A074ZGJ7   U4UCQ5   A0A1A9WA46   B4J5U1   A0A3B5K5A3   A0A3B5KCC3   H3CI66   A0A1Y1M8L2   A1Z7U2   B4P414   B4HSR7   B3N7H4  

PDB

5YXM     E-value=2.53694e-40,     Score=411

KEGG

101746993    K10411 dynein light chain 1, axonemal | (RefSeq) dynein light chain 1, axonemal-like

GO

GO:0045504   GO:0005737   GO:0003774   GO:0043014   GO:0036158   GO:0019888   GO:0000159   GO:0007165   GO:0003924   GO:0005525   GO:0016020   GO:0016021   GO:0036157   GO:0005515   GO:0005524   GO:0043565   GO:0006412   GO:0008097   GO:0016817   GO:0008270   GO:0016876   GO:0043039  

PANTHER

PTHR10257  

Length:

185

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.000960000000000001

Exp number, first 60 AAs:

0.00029

Total prob of N-in:

0.19231

outside

1  -  185

 

 

Pi

387.601237

Theta

206.553846

Tajima's D

2.755064

CLR

0.01799

CSRT

0.964251787410629

Interpretation

Uncertain