SGID Silkworm Genome Informatics Database
Gene
KWMTBOMO08813
Pre Gene Modal
BGIBMGA007870
Annotation
PREDICTED:_probable_ATP-dependent_RNA_helicase_CG8611_[Bombyx_mori]
Location
Bomo_Chr15(-):5832176-5851121      View in EpiBrowser
Full name
RNA helicase      
Location in the cell
Mitochondrial   Reliability : 1.828 Nuclear   Reliability : 2.065
 

Sequence

CDS
ATGGATGATTTACAGTTAAACATATCTGTTTCACAAGGGAGTAAGAAGAAAGCAACATTGAAAAATAATGTATCAGAATATAAGTTTAAGTCTAAACCTACGTTTACTGGCAAAATTATAGCTAGAAAAAGGCCCGTAAACCTCGGGCAGAAGAATATAGATACTAAATCAGTTGATGATGGACCAAAGAAAAAGATTCTTAAAGCTTCACAAACACAAACAGGTGATTTAGCAACAAATTTAAGAGATCTTAGTGAAAACAAAGGAAAATTCCAAGGGAAGAACTATCAAGATCTCAGTGATGATATTCAAATGAAACAAAAGCCAAGAACAGGTGGATGGATATCTTCTCTTTTTAAAAATAATCCTGATGTTCCACGTATTGGGCAGCGTGCAGTCAAACCAATTGTTGAAAAAGTCTTTACTAGTAAAACATTTTCCGAGTTAGATATACATCCTCATAGTATTGCAAATTTACAACAGAATTTAGGTCTCAAAGAACTTATGACTGTACAACAAAATGCTATACCAGTTATTTTATGTGGACGAGATGTACTTATTAGGTCTCAGACAGGCTCAGGAAAAACCTTAGCATATGCTTTGCCAATAATAGAAGGACTTCAGGCGATAAGACCTAAAATAAATAGACATGACGGAATTCGGGCCATCATTGTTGTTCCGACACGTGAATTGGCAGTACAAACTTATGAATTGCTTGTTAAGCTTGTTAAGCCTTTTACCTGGATCGTACCTGGTCTTTTAAGTGGTGGTCAAAAACGGAAAGCAGAAAAAGCTAGGCTAAGAAAAGGATTAAGCATCCTTGTGGGAACACCGGGAAGGATAAATGACCACTTGAGGCATACAAAGTCTCTGAATTTTGATAAAACAGGTTGTTTAATTTTAGATGAAGCTGATAGGCTCTTGGATATGGGATATGAAAAAGACGTAGCTGCGATCGTCAAAGCTATTGAGGATCACAAAAAAGCTGCCACATACGATCCTATTGCTATGATTAAACAAAATGCAAAGAAGACGATCATAGATGATGATGAGTCTAAGCAAGTAGAACAGATTGATAATAAAGATGACTCGGTTGTTGCTAAACATCATTTGACTGAAGTGTTTCTTGGTAAAGACAGACAAACGATCTTATTATCTGCTACACTCACTAAGGCTGTAGAGAATTTAGCAGGAATCACAATGGTTGATCCTGTTTTCATTGATACATCCGAGGGAAAAGCAGTAGTTGCTGATTCTTTGAAACTACATACTAGCAATGTCATTAATAAAGAAGATGTATCAAAGGAAAAGAATGCAGCAATAGAGATCGAAACTGGAAATGAAATTAATATTAAGAAATCAAAAGAAAAAATATCCGTAAAGTCCGAAGAAGGCAATAAAACTGCTCTAGAAGCCAGAAGAGGTCTGAAATCCTTTGGCGGTATAAATAATTCTGAATTATTAAGTTCTAATACTAGTAAACTTGATAATGTAAATGAGAATAATATAACAAAAGATGTTAAAGACGAAACAAATAGTGATAGTGACTCTGACTATGAATATTTCAAAGTGCAAAAAGAACTTGAATCGAAAAAAGTAAGCGTGGAAACTATAAACGACGTAATAAAACCATCGGAAGTTGGCAACACTTTTGTTGAAGCTATAAAGACTGCAATAGTTGAAGATGAACTAGTGCTGCCCGCAACAGTGAATCAGACATTTTTAATTGTCCCAATGAAACTACGATTAGTCACCCTTTGTTCGTTGATCGTCGAACATTGTGTACTGAATAAGAAAGGCGGTAAAATGATTGTTTTTATGGCAACACTAGAGATGGTCGATTATCACTCCGAATTAATTGAGAATGTTTTAACTGGGAACAATGTAAAGGTAAAGAAATCTGGAAATGAAAAGAACAAAGCTAAGAAAAGAAAGGCCAACGATAATGAAAATCAGGATAAATCGGAATCGTCGGATTCGGAATTTGAAATTGATTATCAAGAGGCAAACGAAGGCGGCCTAGTGCCAGTCGACTTGGAGATGTTTAGTCTCCACGGCTCGATGCCGCACGAAAGGAGAATGGAAGTGTTCAAACAGTTTCGGACGGCCAGAAGCGGTGTTTTAATCTGTACGGATGTGGCGGCCCGTGGCTTGGACGTGCCTCGAGTGGACCTCGTCTTGCAGTACTGCGCACCCGCATCCGCAACTGATTATGTTCACAGGGTTGGGCGTACCGGACGAGCGGCGCGTATCGGTGCTGCGGTAATGTTTCTCTTACCGAACGAAGCGGATTTTGTTCGATATTTAGAACAAAAACGTATTAGGCTGCGGCAAGACGATGAATCGAAATGTCTGGAAGCGTTACGTAGCGTTGCACCGGCGGCGCCGAGCGTGCAACGCGCCGCCATCGCGCTACAAGCCCGCCTCGAACACACCGCGCACAGCTCAAAGGAATGGCTCGCTAGGGCCAGTCGAGCGTACACATCATGGGTGCGGTTTTACTCGGGCTACCCTCGCGACGTGCGTCAGTACTTGGATCCCAAACTGTTGCACCTCGGTCACGCGGCCAAAGCCTTCGCTTTGAGAGACACCCCTGCGGCCCTCGCCAGGAGAACTAAGTCCGATCCTAAACTGAAGAAAGAGAGACCCGTCAACAGACTTACAGTCCACGACGAAGAAGAAAGGAAGAGGCCCGGCTTCCCCAAAGTGAAGATCGGTTTTAATAGCAGAGTTATGAATAAGCAAAGTTCAATGCACACGGCCAGTGAATTCGATAGCGGACTGCCCCCACTTGAAAATTCATACAAAAAGAAAAAGAAAAACTGA
Protein
MDDLQLNISVSQGSKKKATLKNNVSEYKFKSKPTFTGKIIARKRPVNLGQKNIDTKSVDDGPKKKILKASQTQTGDLATNLRDLSENKGKFQGKNYQDLSDDIQMKQKPRTGGWISSLFKNNPDVPRIGQRAVKPIVEKVFTSKTFSELDIHPHSIANLQQNLGLKELMTVQQNAIPVILCGRDVLIRSQTGSGKTLAYALPIIEGLQAIRPKINRHDGIRAIIVVPTRELAVQTYELLVKLVKPFTWIVPGLLSGGQKRKAEKARLRKGLSILVGTPGRINDHLRHTKSLNFDKTGCLILDEADRLLDMGYEKDVAAIVKAIEDHKKAATYDPIAMIKQNAKKTIIDDDESKQVEQIDNKDDSVVAKHHLTEVFLGKDRQTILLSATLTKAVENLAGITMVDPVFIDTSEGKAVVADSLKLHTSNVINKEDVSKEKNAAIEIETGNEINIKKSKEKISVKSEEGNKTALEARRGLKSFGGINNSELLSSNTSKLDNVNENNITKDVKDETNSDSDSDYEYFKVQKELESKKVSVETINDVIKPSEVGNTFVEAIKTAIVEDELVLPATVNQTFLIVPMKLRLVTLCSLIVEHCVLNKKGGKMIVFMATLEMVDYHSELIENVLTGNNVKVKKSGNEKNKAKKRKANDNENQDKSESSDSEFEIDYQEANEGGLVPVDLEMFSLHGSMPHERRMEVFKQFRTARSGVLICTDVAARGLDVPRVDLVLQYCAPASATDYVHRVGRTGRAARIGAAVMFLLPNEADFVRYLEQKRIRLRQDDESKCLEALRSVAPAAPSVQRAAIALQARLEHTAHSSKEWLARASRAYTSWVRFYSGYPRDVRQYLDPKLLHLGHAAKAFALRDTPAALARRTKSDPKLKKERPVNRLTVHDEEERKRPGFPKVKIGFNSRVMNKQSSMHTASEFDSGLPPLENSYKKKKKN

Summary

Catalytic Activity
ATP + H2O = ADP + H(+) + phosphate
Similarity
Belongs to the DEAD box helicase family.
Uniprot
A0A194QP13   A0A212F3R8   A0A2H1WJX6   A0A2A4JJ07   A0A3S2N789   A0A194PQD8   + More
A0A0L7L8Z3  
EC Number
3.6.4.13
Pubmed
26354079    22118469    26227816   
EMBL
KQ461195    KPJ06715.1    AGBW02010513    OWR48362.1    ODYU01009058    SOQ53202.1    + More
NWSH01001323    PCG71698.1    RSAL01000266    RVE43265.1    KQ459596    KPI95527.1    JTDY01002234    KOB71835.1   
Proteomes
UP000053240    UP000007151    UP000218220    UP000283053    UP000053268    UP000037510    + More
Pfam
PF00271   Helicase_C        + More
PF13959   DUF4217
PF00270   DEAD
Interpro
IPR025313   DUF4217        + More
IPR027417   P-loop_NTPase       
IPR001650   Helicase_C       
IPR000629   RNA-helicase_DEAD-box_CS       
IPR014001   Helicase_ATP-bd       
IPR014014   RNA_helicase_DEAD_Q_motif       
IPR011545   DEAD/DEAH_box_helicase_dom       
SUPFAM
SSF52540   SSF52540       
CDD
cd00079  HELICc
ProteinModelPortal
A0A194QP13   A0A212F3R8   A0A2H1WJX6   A0A2A4JJ07   A0A3S2N789   A0A194PQD8   + More
A0A0L7L8Z3  
PDB
6EM5     E-value=1.49648e-29,     Score=327

Ontologies

KEGG
101737069    K14806 ATP-dependent RNA helicase DDX31/DBP7 [EC:3.6.4.13] | (RefSeq) probable ATP-dependent RNA hel
GO
GO:0004386   GO:0005524   GO:0003723   GO:0003676   GO:0043565   GO:0006412   GO:0008097   GO:0016817   GO:0008270   GO:0016876   GO:0043039  

Topology

Length:
941
Number of predicted TMHs:
0
Exp number of AAs in TMHs:
0.0320500000000001
Exp number, first 60 AAs:
0
Total prob of N-in:
0.00009
outside
1  -  941
 
 

Population Genetic Test Statistics

Pi
271.294304
Theta
181.676843
Tajima's D
1.451293
CLR
0.52548
CSRT
0.772911354432278
Interpretation
Uncertain
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