Gene

KWMTBOMO08809

Annotation

PREDICTED:_dynamin_isoform_X2_[Bombyx_mori]

Location

Bomo_Chr15(+):5638228-5659592      View in EpiBrowser

Location in the cell

Cytoskeletal   Reliability : 1.859 Nuclear   Reliability : 1.38

CDS

ATGGCTGGAAATTTTGGAATGCAGCAGTTGATTCCTATCGTAAACAAATTACAAGATGCATTTGTACAAATGGGCGTGCACATGTCCTTAGATCTTCCACAAATCGCTGTTGTGGGTGGTCAGTCGGCAGGAAAGAGTTCTGTTTTAGAGAATTTTGTCGGGAGGGATTTTTTACCAAGAGGCTCTGGCATTGTCACACGTCGTCCATTAATTCTGCAGCTTATAAATGGAAATACAGAATATGCAGAATTCTTACACTGCAAGGGAAAGAAGTTCACGGACTTCAATGAAGTTCGAGGAGAGATCGAGGCGGAGACAGATCGTGTTACTGGTTCCAACAAGGGTATATCTCCTGTACCTATTAACCTGCGTGTTTATTCCCCGAATGTGCTCAACCTGACGCTGATTGATTTGCCGGGTCTGACAAAAGTGCCAATCGGTGATCAGCCTATAGATATCGAGCAGCAAATCAAAGGGATGATATTCCAGTTCATCAGACGCGAATCATGCCTTATCCTGGCAGTTACTCCGGCCAACACGGATTTGGCCAACAGCGATGCTCTGAAGCTTGCCAAAGAAGTAGACCCACAAGGATTGCGTACTATCGGCGTAATAACAAAATTAGATTTGATGGACGAGGGTACCGATGCGCGGGACGTGCTCGAGAACAAGCTGCTGCCGCTGCGCCGAGGCTACATCGGAGTCGTCAACCGATCGCAGAAAGACATTGACGGTCGCAAGGACATAGCCGCTGCACTTGCGGCTGAGAGAAAATTCTTCCTTAGCCACCCGTCATACCGTCATTTGGCCGATCGTCTCGGTACCCCTTACCTACAGCGAGTGTTGAACCAACAGCTCACCAACCATATCCGCGACACTCTGCCCAGTCTCCGTGACAAGTTGCAGAAACAACTACTGACCTTGGAGAAGGACGTCGACCAGTACAAGCATTTCCGACCCGATGACCCGTCTATTAAAACTAAGGCCATGTTGCAAATGATTCAGACTTTGCAAACCGATTTTGAACGCACCATCGAAGGTTCCGGATCGGCGCAGATCAACACCAACGAATTGTCCGGTGGCGCTAAGATCAACAGGCTTTTCCACGAACGTTTTCCTTTTGAAATTGTCAAAATGGAGTTTGACGAAAAGGAACTGCGCCGCGAGATCGCGTTCGCCATTCGAAATATCCACGGTATCCGAGTGGGTTTGTTCACACCGGATATGGCGTTTGAGGCTATCGTGAAAAAGCAGATCGGACGTCTGAAGGAGCCGTGCCTGAAGTGCGTCGATCTGGTTGTGCAGGAGCTGTCCAACGTTGTACGGATTTGCACCGAACGAATGTCTCGTTACCCGCGCCTGCGCGAAGAGACGGAGCGCATCATAATGTCGCACGTGCGCTCGCGGGAGCAGATGTGCAAGGATCAGCTGGTGCTGCTCATCGACTGCGAACTGGCTTATATGAATACCAATCATGAAGATTTCATTGGATTCGCGAACGCACAAAATCAGTCTGAGAACTCTGCGAAGTCAGGACATCGAGCGCTCGGAAATCAGGTGATCCGAAAAGGATACATGTGCATTCACAATCTGGGAATTATGAAGGGAGGTTCCCGCGACTACTGGTTCGTACTGACTTCTGAGAGCATCTCGTGGTACAAGGATGAAGAGGAGCGGGAGAAGAAGTACATGTTGCCCCTCGACGGGCTCAAGTTGAGAGATCTCGAGCAGGGCTTCATGTCGCGGCGACACATGTTCGCACTCTTCAACCCTGAAGGCAGAAATGTTTACAAGGATTACAAGCAATTGGAGTTGTCGTGTGAAACTCAAGATGACGTCGATTCGTGGAAGGCTTCGTTCCTGCGCGCGGGAGTCTACCCCGAGAAGACATCGGAGGCGGCCAACGGCGACGAGAATTCGGACAGCACAGGCACCAGCAGTATGGACCCGCAGTTAGAGAGGCAGGTGGAGACCATCCGTAATCTGGTGGATTCGTACATGCGCATCGTGACGAAGACAACGCGAGATCTCGTCCCCAAGACAATCATGATGATGATTATCAATAATGCCAAAGACTTCATTAATGGAGAATTACTCGCGCATCTGTATGCGTCCGGGGATCAGTCTCAAATGATGGAAGAGTCTCCCGAGGAGGCACTGAAGCGTGAAGAGATGTTGCGCATGTACCACGCGTGCAAGGAGGCGCTGCACATCATCGGCGACGTGTCCATGGCCACCGTGAGCACGCCCGTCCCGCCGCCCGTCAAGAACGACTGGCTCGAGAGCAGACTCGACTCCAACCCGAGACTGTCGCCGCCCTCGCCCGGCGGCCCGCGCCGCGCCGCACCCGCGCAGCAAGGCACGTACACGCTCTGA

Protein

MAGNFGMQQLIPIVNKLQDAFVQMGVHMSLDLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLILQLINGNTEYAEFLHCKGKKFTDFNEVRGEIEAETDRVTGSNKGISPVPINLRVYSPNVLNLTLIDLPGLTKVPIGDQPIDIEQQIKGMIFQFIRRESCLILAVTPANTDLANSDALKLAKEVDPQGLRTIGVITKLDLMDEGTDARDVLENKLLPLRRGYIGVVNRSQKDIDGRKDIAAALAAERKFFLSHPSYRHLADRLGTPYLQRVLNQQLTNHIRDTLPSLRDKLQKQLLTLEKDVDQYKHFRPDDPSIKTKAMLQMIQTLQTDFERTIEGSGSAQINTNELSGGAKINRLFHERFPFEIVKMEFDEKELRREIAFAIRNIHGIRVGLFTPDMAFEAIVKKQIGRLKEPCLKCVDLVVQELSNVVRICTERMSRYPRLREETERIIMSHVRSREQMCKDQLVLLIDCELAYMNTNHEDFIGFANAQNQSENSAKSGHRALGNQVIRKGYMCIHNLGIMKGGSRDYWFVLTSESISWYKDEEEREKKYMLPLDGLKLRDLEQGFMSRRHMFALFNPEGRNVYKDYKQLELSCETQDDVDSWKASFLRAGVYPEKTSEAANGDENSDSTGTSSMDPQLERQVETIRNLVDSYMRIVTKTTRDLVPKTIMMMIINNAKDFINGELLAHLYASGDQSQMMEESPEEALKREEMLRMYHACKEALHIIGDVSMATVSTPVPPPVKNDWLESRLDSNPRLSPPSPGGPRRAAPAQQGTYTL

Similarity

Belongs to the TRAFAC class dynamin-like GTPase superfamily. Dynamin/Fzo/YdjA family.

Uniprot

A0A2A4K370   A0A2A4K3U0   A0A2A4K466   A0A3S2P6X9   A0A194PRE1   A0A1E1W6Q7   + More
D6X4J4   E2AA61   V9I9H2   A0A1W4WLA0   E2B692   A0A151ILI7   A0A195BYX1   A0A151IYR7   V9I7S1   A0A195FXL3   A0A0M8ZQM5   A0A151XGD9   A0A1Y1JZ95   A0A026WXD5   A0A1Y1K0B7   A0A1Y1JW64   A0A0P4VU42   A0A154PJG1   V9I9Y2   A0A088A6T0   A0A224XIG2   V9I7M3   A0A0C9PL23   A0A023F5T5   U4UBD3   A0A3T0D1N7   A0A069DX71   A0A158P3J0   N6TWX6   A0A232EYE3   K7IZQ3   A0A2A3EBL3   A0A1B6G972   A0A067RG47   A0A310SP26   A0A3L8DI49   A0A0A9X2I0   A0A146LZJ0   A0A1B6F7D2   A0A0A9WV52   A0A1B6GYH2   A0A1B6FZW1   A0A1B6M459   A0A1B6EZ89   A0A1B6LWT0   A0A0L7QPB4   E0VWF3   A0A1L8DW16   A0A1L8DVI7   A0A1B6L9E6   A0A1B6KTY4   T1I8U2   Q172Q6   Q172Q5   X1XTW3   A0A1Q3G459   A0A084VRC2   A0A2M3Z3A4   A0A182F7D9   A0A2M4A4P7   A0A182N637   A0A2M4BDG2   A0A0A1WPC2   A0A182Y4B0   A0A182QYT8   A0A1D2NFF0   A0A2M4A4L7   A0A2M4BDH6   A0A0A1WMG6   A0A182W067   A0A182P5T2   A0A0A1WHV0   U5EZL6   A0A182J339   A0A182RNQ9   A0A2M4CLP8   A0A0A1XF50   A0A182VAR5   A0A182JTF7   W8BD40   A0A0K8VD42   W8C039   W8B8L3   A0A034VHJ4   A0A182WRJ4   W8BD65   A0A182HU83   W8B1H6   Q5TU35   A0A034VLU2   A0A034VJV9   W5JEG4   A0A0V0GAN7   A0A182HU82  

Pubmed

26354079    18362917    19820115    20798317    28004739    24508170    + More
27129103    25474469    23537049    26334808    21347285    28648823    20075255    24845553    30249741    25401762    26823975    20566863    17510324    24438588    25830018    25244985    27289101    24495485    25348373    12364791    14747013    17210077    20920257    23761445   

EMBL

NWSH01000179    PCG78697.1    PCG78696.1    PCG78698.1    RSAL01000266    RVE43262.1    + More
KQ459596    KPI95523.1    GDQN01008523    JAT82531.1    KQ971380    EEZ97258.2    GL438029    EFN69699.1    JR036359    AEY57106.1    GL445930    EFN88785.1    KQ977133    KYN05491.1    KQ976394    KYM93118.1    KQ980744    KYN13711.1    JR036358    AEY57105.1    KQ981161    KYN45410.1    KQ435899    KOX69135.1    KQ982174    KYQ59310.1    GEZM01099026    JAV53561.1    KK107088    EZA59804.1    GEZM01099027    JAV53560.1    GEZM01099028    JAV53559.1    GDKW01000433    JAI56162.1    KQ434936    KZC11967.1    JR036357    AEY57104.1    GFTR01008206    JAW08220.1    JR036356    AEY57103.1    GBYB01001703    JAG71470.1    GBBI01002168    JAC16544.1    KB632184    ERL89643.1    MH143574    AZT88971.1    GBGD01000483    JAC88406.1    ADTU01008108    ADTU01008109    ADTU01008110    ADTU01008111    ADTU01008112    APGK01048488    KB741112    ENN73805.1    NNAY01001646    OXU23329.1    KZ288312    PBC28441.1    GECZ01010795    JAS58974.1    KK852705    KDR18024.1    KQ760631    OAD59709.1    QOIP01000008    RLU19508.1    GBHO01032294    GBRD01010188    JAG11310.1    JAG55636.1    GDHC01006497    JAQ12132.1    GECZ01023715    JAS46054.1    GBHO01032299    GBHO01032293    GBRD01010190    JAG11305.1    JAG11311.1    JAG55634.1    GECZ01002294    JAS67475.1    GECZ01014059    JAS55710.1    GEBQ01009265    JAT30712.1    GECZ01026541    JAS43228.1    GEBQ01011860    JAT28117.1    KQ414819    KOC60478.1    DS235819    EEB17704.1    GFDF01003481    JAV10603.1    GFDF01003633    JAV10451.1    GEBQ01019823    JAT20154.1    GEBQ01025099    JAT14878.1    ACPB03003517    CH477432    EAT41041.1    EAT41042.1    ABLF02030849    ABLF02030855    ABLF02030856    GFDL01000457    JAV34588.1    ATLV01015604    KE525023    KFB40516.1    GGFM01002250    MBW23001.1    GGFK01002379    MBW35700.1    GGFJ01001902    MBW51043.1    GBXI01013590    JAD00702.1    AXCN02000193    LJIJ01000058    ODN03957.1    GGFK01002433    MBW35754.1    GGFJ01001954    MBW51095.1    GBXI01017229    GBXI01014240    JAC97062.1    JAD00052.1    GBXI01015855    JAC98436.1    GANO01000564    JAB59307.1    GGFL01002084    MBW66262.1    GBXI01005179    JAD09113.1    GAMC01011622    JAB94933.1    GDHF01015526    JAI36788.1    GAMC01011621    JAB94934.1    GAMC01011618    JAB94937.1    GAKP01016203    GAKP01016201    GAKP01016196    GAKP01016195    JAC42756.1    GAMC01011619    GAMC01011617    JAB94938.1    APCN01000612    GAMC01011620    GAMC01011616    JAB94935.1    AAAB01008859    EAL40783.4    GAKP01016202    GAKP01016199    GAKP01016194    GAKP01016193    JAC42750.1    GAKP01016204    GAKP01016200    GAKP01016198    GAKP01016197    JAC42754.1    ADMH02001371    ETN62747.1    GECL01001199    JAP04925.1   

Proteomes

UP000218220    UP000283053    UP000053268    UP000007266    UP000000311    UP000192223    + More
UP000008237    UP000078542    UP000078540    UP000078492    UP000078541    UP000053105    UP000075809    UP000053097    UP000076502    UP000005203    UP000030742    UP000005205    UP000019118    UP000215335    UP000002358    UP000242457    UP000027135    UP000279307    UP000053825    UP000009046    UP000015103    UP000008820    UP000007819    UP000030765    UP000069272    UP000075884    UP000076408    UP000075886    UP000094527    UP000075920    UP000075885    UP000075880    UP000075900    UP000075903    UP000075881    UP000076407    UP000075840    UP000007062    UP000000673   

Pfam

PF02212   GED        + More
PF00350   Dynamin_N
PF00169   PH
PF01031   Dynamin_M
PF03114   BAR
PF14604   SH3_9

Interpro

IPR003130   GED        + More
IPR027417   P-loop_NTPase       
IPR001849   PH_domain       
IPR030381   G_DYNAMIN_dom       
IPR011993   PH-like_dom_sf       
IPR019762   Dynamin_GTPase_CS       
IPR001401   Dynamin_GTPase       
IPR027741   DNM1       
IPR000375   Dynamin_central       
IPR020850   GED_dom       
IPR022812   Dynamin_SF       
IPR004148   BAR_dom       
IPR036028   SH3-like_dom_sf       
IPR027267   AH/BAR_dom_sf       
IPR001452   SH3_domain       

SUPFAM

SSF52540   SSF52540        + More
SSF50044   SSF50044       
SSF103657   SSF103657       

Gene 3D

2.30.29.30     1.20.1270.60    

CDD

cd08771  DLP_1

ProteinModelPortal

A0A2A4K370   A0A2A4K3U0   A0A2A4K466   A0A3S2P6X9   A0A194PRE1   A0A1E1W6Q7   + More
D6X4J4   E2AA61   V9I9H2   A0A1W4WLA0   E2B692   A0A151ILI7   A0A195BYX1   A0A151IYR7   V9I7S1   A0A195FXL3   A0A0M8ZQM5   A0A151XGD9   A0A1Y1JZ95   A0A026WXD5   A0A1Y1K0B7   A0A1Y1JW64   A0A0P4VU42   A0A154PJG1   V9I9Y2   A0A088A6T0   A0A224XIG2   V9I7M3   A0A0C9PL23   A0A023F5T5   U4UBD3   A0A3T0D1N7   A0A069DX71   A0A158P3J0   N6TWX6   A0A232EYE3   K7IZQ3   A0A2A3EBL3   A0A1B6G972   A0A067RG47   A0A310SP26   A0A3L8DI49   A0A0A9X2I0   A0A146LZJ0   A0A1B6F7D2   A0A0A9WV52   A0A1B6GYH2   A0A1B6FZW1   A0A1B6M459   A0A1B6EZ89   A0A1B6LWT0   A0A0L7QPB4   E0VWF3   A0A1L8DW16   A0A1L8DVI7   A0A1B6L9E6   A0A1B6KTY4   T1I8U2   Q172Q6   Q172Q5   X1XTW3   A0A1Q3G459   A0A084VRC2   A0A2M3Z3A4   A0A182F7D9   A0A2M4A4P7   A0A182N637   A0A2M4BDG2   A0A0A1WPC2   A0A182Y4B0   A0A182QYT8   A0A1D2NFF0   A0A2M4A4L7   A0A2M4BDH6   A0A0A1WMG6   A0A182W067   A0A182P5T2   A0A0A1WHV0   U5EZL6   A0A182J339   A0A182RNQ9   A0A2M4CLP8   A0A0A1XF50   A0A182VAR5   A0A182JTF7   W8BD40   A0A0K8VD42   W8C039   W8B8L3   A0A034VHJ4   A0A182WRJ4   W8BD65   A0A182HU83   W8B1H6   Q5TU35   A0A034VLU2   A0A034VJV9   W5JEG4   A0A0V0GAN7   A0A182HU82  

PDB

4UUK     E-value=0,     Score=3034

KEGG

101735699    K01528 dynamin 1/3 [EC:3.6.5.5] | (RefSeq) dynamin

PATHWAY

04144    Endocytosis - Bombyx mori (domestic silkworm)

GO

GO:0072583   GO:0005525   GO:0003924   GO:0044327   GO:0016185   GO:0031410   GO:0005737   GO:0043197   GO:0098884   GO:0031623   GO:0050803   GO:0030424   GO:0008017   GO:0014069   GO:0045211   GO:0005886   GO:0098793   GO:0098844   GO:0045202   GO:0016020   GO:0005840   GO:0006412   GO:0008097   GO:0016817   GO:0008270   GO:0043565   GO:0016876   GO:0043039  

PANTHER

PTHR11566:SF32   PTHR11566  

Length:

791

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.00450999999999999

Exp number, first 60 AAs:

0.00302

Total prob of N-in:

0.00019

outside

1  -  791

 

 

Pi

215.484773

Theta

174.432435

Tajima's D

0.623765

CLR

0.01747

CSRT

0.547222638868057

Interpretation

Uncertain