Gene

KWMTBOMO08806  Validated by peptides from experiments

Pre Gene Modal

BGIBMGA007698

Annotation

PREDICTED:_exosome_complex_component_RRP4_[Bombyx_mori]

Location

Bomo_Chr15(+):5578398-5580336      View in EpiBrowser

Location in the cell

Nuclear   Reliability : 2.319

CDS

ATGGTCAGTCATGTATCTATAAAACTCGCATCTGAAAGAGTAAATCATTCGGTTGCCTCAAATAATGACCCGCCGCGTTTTTACACTCCTGGCGAAGTCATAACTGGGATACAAGATTTTATGAGAGGCCACGGAACTTACGCAGAAGATGATTGCCTAAAAGCATCTGTTGCTGGGGTTATGCAAAAAGTAAATAAACTTATATGCATTCGCCCATTGAAGAGTCGTTACGTTGGAGAAATAGGCGATGTGGTAGTCGGAAGAGTATTGGAAGTTCAACAGAAAAGATGGAAAGTTGATACCAATTCACGACTTGATTCAATACTTCAACTTTCTTCAGTAAATCTACCTGGCGGAGAATTGAGAAGGCGTTCAGAAGAGGATGAGCAGATGATGAGAAAACATTTACAGGAAGGTGATTTGATAAGCGCTGAAGTACAGAATGTATTTTCTGATGGTTCGCTCTCATTGCATACAAGAAGTTTGAAATATGGCAAGCTTTCACAGGGAACTTTAATAAAAGTATTCCCGTCATTGATAAAGCGCAGAAAAAATCATTTTCACAACTTACCATGTGCAGTATCTGTCATAATAGGGAATAATGGATATATATGGATTAGTCCACACAAAAGTGATATTCTTATGGAAGGAAATAAGGATGCAATTGAAAATTATGAAATTCAGCCTGTTGGGAAATCAGAAAGAGAAACGATGGCGCGAGTGAAAAATTGTATTTTGGCACTTGTGGCATCTAAGATGATGTTAGATGATACTAGCATAATGTTTGCATTCGAAGAAAGTCTCAAATACGACAATGTAAAGGAACTCTTGGATCCTGAAGCTATGCTTGACGTAGCATTTTTAACTCAGCATAGAATAAATATTATTGCAGAAGAGTGA

Protein

MVSHVSIKLASERVNHSVASNNDPPRFYTPGEVITGIQDFMRGHGTYAEDDCLKASVAGVMQKVNKLICIRPLKSRYVGEIGDVVVGRVLEVQQKRWKVDTNSRLDSILQLSSVNLPGGELRRRSEEDEQMMRKHLQEGDLISAEVQNVFSDGSLSLHTRSLKYGKLSQGTLIKVFPSLIKRRKNHFHNLPCAVSVIIGNNGYIWISPHKSDILMEGNKDAIENYEIQPVGKSERETMARVKNCILALVASKMMLDDTSIMFAFEESLKYDNVKELLDPEAMLDVAFLTQHRINIIAEE

Uniprot

A0A3S2TE02   A0A212F0U7   A0A2H1W0G5   A0A1E1WLH3   A0A2A4K376   A0A194QMF0   + More
A0A194PRD6   A0A1I8PLC8   A0A1S4FXG8   T1P9A5   A0A1W4X7T5   A0A0K8UVM1   A0A1B6D3W3   A0A182HBL6   A0A1B6GLX1   Q16KT2   A0A1L8DXU4   W8BW77   A0A1Q3F074   A0A2J7RGE7   B0XEH0   A0A1B6MIS7   A0A0T6AYS8   A0A182PI85   D6WCP9   A0A182K1A8   A0A0L0BTR8   A0A182LHN2   A0A182HFY7   A0A182V4B5   A0A182UCP1   Q7QHJ5   A0A182MD70   A0A182J4A1   A0A1A9X7X5   A0A1B0ALS0   A0A182YEB2   A0A182WDD5   B0WN41   B0XEG9   D3TQI0   A0A1L8DXU1   A0A1A9UUA7   A0A182QT87   A0A084W3J7   A0A2M3ZAE6   A0A2M4BVU4   E0VMT8   A0A1A9WUK6   W5JLK6   A0A2M4AUY3   A0A336KYJ6   Q28ZE6   B4GHV8   A0A3B0IYB1   B4J751   A0A1W4ULR8   A0A067RDM3   R7TUR3   B4LLW4   B3MFH2   A0A1S3JN63   B4QIR6   A0A0M4ELL5   B4P9P3   Q9W1M9   A0A1Y1LLF7   Q8MSZ7   B3NPN8   A0A182X5H3   M9THE4   B4I8P8   B4NNA4   A0A182FVI9   A0A2C9JMM9   A4VBG0   A0A210R138   A0A3S1BG78   A0A1J1I077   A0A0B6ZXL9   A0A0L7R503   B4KRZ0   J3JTA6   A0A0L8H8V4   H3B6W2   A0A1A8SN53   A0A1A8M7G9   A0A1A8U6L3   A0A1A8HXN1   A0A1A8D8E3   V4AST0   A0A154PN47   A0A1A8HD24   A0A0N0BJG2   A0A182RCY7   A0A1A7ZUD9   M3ZSU1   A0A1A7YJR7   A0A3Q4B4P1   A0A3P8PT22  

Pubmed

22118469    26354079    25315136    26483478    17510324    24495485    + More
18362917    19820115    26108605    20966253    12364791    14747013    17210077    25244985    20353571    24438588    20566863    20920257    23761445    15632085    17994087    24845553    23254933    22936249    17550304    10731132    12537568    12537572    12537573    12537574    16110336    17569856    17569867    26109357    26109356    28004739    15562597    28812685    22516182    23537049    9215903    23542700   

EMBL

RSAL01000266    RVE43259.1    AGBW02011012    OWR47376.1    ODYU01005599    SOQ46595.1    + More
GDQN01003353    JAT87701.1    NWSH01000179    PCG78705.1    KQ461195    KPJ06707.1    KQ459596    KPI95518.1    KA644740    AFP59369.1    GDHF01021731    JAI30583.1    GEDC01030373    GEDC01016917    GEDC01007594    JAS06925.1    JAS20381.1    JAS29704.1    JXUM01125259    KQ566925    KXJ69729.1    GECZ01006436    JAS63333.1    CH477938    EAT34927.1    GFDF01002804    JAV11280.1    GAMC01000985    JAC05571.1    GFDL01014094    JAV20951.1    NEVH01003814    PNF39909.1    DS232831    EDS25967.1    GEBQ01004107    JAT35870.1    LJIG01022505    KRT80218.1    KQ971317    EEZ98806.1    JRES01001349    KNC23480.1    APCN01005439    AAAB01008816    EAA05284.3    AXCM01008841    JXJN01000086    DS232006    EDS31460.1    EDS25966.1    CCAG010001014    EZ423682    ADD19958.1    GFDF01002848    JAV11236.1    AXCN02001709    ATLV01020055    KE525293    KFB44791.1    GGFM01004742    MBW25493.1    GGFJ01007910    MBW57051.1    DS235324    EEB14694.1    ADMH02001208    ETN63659.1    GGFK01011272    MBW44593.1    UFQS01001263    UFQT01001263    SSX10032.1    SSX29754.1    CM000071    EAL25667.1    CH479183    EDW36078.1    OUUW01000001    SPP73004.1    CH916367    EDW01039.1    KK852703    KDR18084.1    AMQN01010772    KB308499    ELT97658.1    CH940648    EDW61987.1    CH902619    EDV36657.1    CM000362    CM002911    EDX08394.1    KMY96058.1    CP012524    ALC42492.1    CM000158    EDW92351.1    AE013599    AAF47028.1    AHN56566.1    GEZM01052494    JAV74482.1    AY118465    AAM49834.1    CH954179    EDV56829.1    BT150044    AGJ51083.1    CH480824    EDW56973.1    CH964282    EDW85843.1    AM709652    CAM96513.1    NEDP02000942    OWF54694.1    RQTK01000265    RUS82933.1    CVRI01000036    CRK92972.1    HACG01025736    CEK72601.1    KQ414654    KOC65965.1    CH933808    EDW09431.1    APGK01017071    BT126462    KB739995    AEE61426.1    ENN82033.1    KQ418832    KOF85711.1    AFYH01027437    AFYH01027438    AFYH01027439    AFYH01027440    AFYH01027441    HAEH01007522    HAEI01016466    SBS18935.1    HAEF01011801    HAEG01006322    SBR52960.1    HAEJ01002550    SBS43007.1    HAED01004184    HAEE01004969    SBQ90214.1    HADZ01022359    HAEA01000719    SBQ29199.1    KB201304    ESO97905.1    KQ434998    KZC13279.1    HAEB01008187    HAEC01013050    SBQ81267.1    KQ435715    KOX79092.1    HADY01007992    SBP46477.1    HADW01020407    HADX01008600    SBP30832.1   

Proteomes

UP000283053    UP000007151    UP000218220    UP000053240    UP000053268    UP000095300    + More
UP000095301    UP000192223    UP000069940    UP000249989    UP000008820    UP000235965    UP000002320    UP000075885    UP000007266    UP000075881    UP000037069    UP000075882    UP000075840    UP000075903    UP000075902    UP000007062    UP000075883    UP000075880    UP000092443    UP000092460    UP000076408    UP000075920    UP000092444    UP000078200    UP000075886    UP000030765    UP000009046    UP000091820    UP000000673    UP000001819    UP000008744    UP000268350    UP000001070    UP000192221    UP000027135    UP000014760    UP000008792    UP000007801    UP000085678    UP000000304    UP000092553    UP000002282    UP000000803    UP000008711    UP000076407    UP000001292    UP000007798    UP000069272    UP000076420    UP000242188    UP000271974    UP000183832    UP000053825    UP000009192    UP000019118    UP000053454    UP000008672    UP000030746    UP000076502    UP000053105    UP000075900    UP000002852    UP000261620    UP000265100   

PRIDE

Q9W1M9    Q8MSZ7    M9THE4   

Pfam

PF14382   ECR1_N        + More
PF15985   KH_6
PF13855   LRR_8

Interpro

IPR036612   KH_dom_type_1_sf        + More
IPR012340   NA-bd_OB-fold       
IPR025721   Exosome_cplx_N_dom       
IPR004088   KH_dom_type_1       
IPR026699   Exosome_RNA_bind1/RRP40/RRP4       
IPR003029   S1_domain       
IPR022967   S1_dom       
IPR001611   Leu-rich_rpt       
IPR003591   Leu-rich_rpt_typical-subtyp       
IPR032675   LRR_dom_sf       
IPR026053   HPS1       

SUPFAM

SSF54791   SSF54791        + More
SSF50249   SSF50249       

Gene 3D

3.80.10.10    

ProteinModelPortal

A0A3S2TE02   A0A212F0U7   A0A2H1W0G5   A0A1E1WLH3   A0A2A4K376   A0A194QMF0   + More
A0A194PRD6   A0A1I8PLC8   A0A1S4FXG8   T1P9A5   A0A1W4X7T5   A0A0K8UVM1   A0A1B6D3W3   A0A182HBL6   A0A1B6GLX1   Q16KT2   A0A1L8DXU4   W8BW77   A0A1Q3F074   A0A2J7RGE7   B0XEH0   A0A1B6MIS7   A0A0T6AYS8   A0A182PI85   D6WCP9   A0A182K1A8   A0A0L0BTR8   A0A182LHN2   A0A182HFY7   A0A182V4B5   A0A182UCP1   Q7QHJ5   A0A182MD70   A0A182J4A1   A0A1A9X7X5   A0A1B0ALS0   A0A182YEB2   A0A182WDD5   B0WN41   B0XEG9   D3TQI0   A0A1L8DXU1   A0A1A9UUA7   A0A182QT87   A0A084W3J7   A0A2M3ZAE6   A0A2M4BVU4   E0VMT8   A0A1A9WUK6   W5JLK6   A0A2M4AUY3   A0A336KYJ6   Q28ZE6   B4GHV8   A0A3B0IYB1   B4J751   A0A1W4ULR8   A0A067RDM3   R7TUR3   B4LLW4   B3MFH2   A0A1S3JN63   B4QIR6   A0A0M4ELL5   B4P9P3   Q9W1M9   A0A1Y1LLF7   Q8MSZ7   B3NPN8   A0A182X5H3   M9THE4   B4I8P8   B4NNA4   A0A182FVI9   A0A2C9JMM9   A4VBG0   A0A210R138   A0A3S1BG78   A0A1J1I077   A0A0B6ZXL9   A0A0L7R503   B4KRZ0   J3JTA6   A0A0L8H8V4   H3B6W2   A0A1A8SN53   A0A1A8M7G9   A0A1A8U6L3   A0A1A8HXN1   A0A1A8D8E3   V4AST0   A0A154PN47   A0A1A8HD24   A0A0N0BJG2   A0A182RCY7   A0A1A7ZUD9   M3ZSU1   A0A1A7YJR7   A0A3Q4B4P1   A0A3P8PT22  

PDB

6H25     E-value=4.63767e-88,     Score=826

KEGG

101737211    K03679 exosome complex component RRP4 | (RefSeq) exosome complex component RRP4

PATHWAY

03018    RNA degradation - Bombyx mori (domestic silkworm)

GO

GO:0003723   GO:0004527   GO:0000178   GO:0000176   GO:0071034   GO:0071049   GO:0000177   GO:0034475   GO:0034427   GO:0071038   GO:0043928   GO:0000467   GO:0071035   GO:0071051   GO:0051607   GO:0010468   GO:0005737   GO:0005652   GO:0003676   GO:0005840   GO:0006412   GO:0008097   GO:0016817   GO:0008270   GO:0043565   GO:0016876   GO:0043039  

PANTHER

PTHR21321   PTHR12761  

Length:

299

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.89239

Exp number, first 60 AAs:

0

Total prob of N-in:

0.05713

outside

1  -  299

 

 

Pi

199.433703

Theta

177.496215

Tajima's D

0.512809

CLR

0.064112

CSRT

0.516174191290436

Interpretation

Possibly Positive selection