SGID Silkworm Genome Informatics Database
Gene
KWMTBOMO08803
Pre Gene Modal
BGIBMGA007697
Annotation
PREDICTED:_zyxin_[Bombyx_mori]
Location in the cell
Nuclear   Reliability : 3.619
 

Sequence

CDS
ATGCTATATGAGGCTCGCACACTCACGCACGTCGGACAGGCAGCAACATCCGCGGCCTGCGCGACTCCCGCTCTGAAGTCTGAGCGAGCAGTCAGTTCGGCGCCGTCAACCAACACGCGCACACGTATCCACAGTAAAATGGCAGCCGCCCACACGCACCCTGCCCCCGCGCCCTCAGACCGTCGCGCTGAGGGCCGAGCTGGTTCCCGCCGTATTTTTCCACCACAATTTAAACTACAAGTCCTTGAAGCGTACAGACGTGATTCCCAATGTAGAGGAAACCAACGTGCCACCGCTAGGAAGTTTGGCATCCATCGCAGACAGATCCAAAAGTGGCTACAAGCTGAACCTGCTTTGCGAGCGGCGCTGTTAAGGAGAGCTCCACAGCCGGCGCCATCACCTCCTCCATATGCTGCTGGTTCCCCCGAAAGTGCAAGATTACCTACACCACCTCCACCTCCTACGATGCCAACGTCAGTTTCATTGCCTACACCTCTACCTGTTCAAGCATTGGTACAGCCGTCAACAGAACCTATAGATTTATCAGTACGGAGATGTTCACCGCTAACGTTAGCGCATCCACCAGTTGCACCTGAACCACCTCGCAAGCCGTTTAAATTATTCCGACCTTACTTACTTGAAGATGAAGATGAGAAGCGACCATCAATCGCTTCATTGCCAGTTTCGAATACAGGATATGTTTCTGCGTTTGTGCCAGTACAAAGTGCAGCGGGTTGCGCCTTGACCGCGTGTTCTGCTCCTCATTGGTGTGCAGCTATGCCCTCTTACTCGGCTCCTTTGAGATGA
Protein
MLYEARTLTHVGQAATSAACATPALKSERAVSSAPSTNTRTRIHSKMAAAHTHPAPAPSDRRAEGRAGSRRIFPPQFKLQVLEAYRRDSQCRGNQRATARKFGIHRRQIQKWLQAEPALRAALLRRAPQPAPSPPPYAAGSPESARLPTPPPPPTMPTSVSLPTPLPVQALVQPSTEPIDLSVRRCSPLTLAHPPVAPEPPRKPFKLFRPYLLEDEDEKRPSIASLPVSNTGYVSAFVPVQSAAGCALTACSAPHWCAAMPSYSAPLR

Summary

Pfam
PF09607   BrkDBD
Interpro
IPR018586   Brinker_DNA-bd        + More
IPR010921   Trp_repressor/repl_initiator       
SUPFAM
SSF48295   SSF48295       
PDB
2GLO     E-value=7.67611e-17,     Score=211

Ontologies

Topology

Length:
268
Number of predicted TMHs:
0
Exp number of AAs in TMHs:
0.07153
Exp number, first 60 AAs:
0.00162
Total prob of N-in:
0.05432
outside
1  -  268
 
 

Population Genetic Test Statistics

Pi
274.214388
Theta
232.029594
Tajima's D
0.556009
CLR
0
CSRT
0.528723563821809
Interpretation
Possibly Positive selection
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