SGID Silkworm Genome Informatics Database
Gene
KWMTBOMO08801
Annotation
reverse_transcriptase_[Bombyx_mori]
Location in the cell
Mitochondrial   Reliability : 2.748
 

Sequence

CDS
ATGACGAACTGCATCTTTCCCGCGGCGTGGAAAGAAGCGGACGTTATCGGCATACACAAGCCGGGCAAACCGAAGAACGAAACCGCGAGTTACCGCCCCATCAGTCTCCTCCCGGCGATAGGCAAACTATACGAACGGCTCCTTCGTAAACGCCTCTGGGACTTCGTATCCGCGAATAAAATTCTCATAGACGAGCAGTTTGGATTCCGCGCCAGACACTCGTGCGTCCATCAAGTGCACCGCCTCACGGAGCACATCTTACTAGGGCTGAACAGGCGGAAACCCATTCCGACAGGAGCCCTCTTCTTCGATATAGCGAAGGCGTTCGACAAAGTCTGGCACAACGGTTTGATATACAAACTGTATAACATGGGAGTGCCAGACAGACTCGTGCTCATCATACGAGACTACTTGTCGAACCGTTCGTTCCGATATCGAGTCGAGGGAACGCGTTCCCGGCCCCGTCACGTCACAGCCGGAGTCCCGCAAGGCTCCGCCCTCTCCCCGTTACTATTTAGTTTGTATATCAACGATATACCCCGGTCTCCGGAGACCCATCTGGCGCTCTTCGCCGATGACACCGCCATCTACTACTCGTGTAGGAAGAAGGCGTTGCTTCATCGACGACTTCAGACCGCAGCTACCACCATGGGACAGTGGTTCCGGAAGTGGCGCATCGACATCAACCCCACGAAAAGCACAGCGGTGCTCTTCAAAAGGGGTCGCCCTCCGAACACCACGCTGAGCATCCCCCTCCCGACTAGGCGCGTCAACACCTCCGCCCCCGCCGTTCGCCCAATCACGATGTTCGACCAGCCCATACCGTGGGCCCCGAAGGTCAAATATTTAGGCGTCACCCTCGACAGTAGGATGACATTCCGCCCCCACATCAAGACGGTACGCGATCGTGCCGCCTTCATTCTAGGACGTCTCTACCCGATGATATCTAGGCGAAGTAAAATGTCCCTTAGAAATAAGGTGACACTCTACAAAACTTGCATACGCCCCGTCATGACCTATGCAAGTGTAGTGTTCGCTCACGCGGCCCGCATACACTTGAAATCATTCCAAGTCATTCAATCCCGTTTTTGCAGGATAGCCGTCGGAGCCCCGTGGTTCGTCAGGAATGTCGACCTCCATGACGACCTGGACTTACGAGTCCATCAGTAA
Protein
MTNCIFPAAWKEADVIGIHKPGKPKNETASYRPISLLPAIGKLYERLLRKRLWDFVSANKILIDEQFGFRARHSCVHQVHRLTEHILLGLNRRKPIPTGALFFDIAKAFDKVWHNGLIYKLYNMGVPDRLVLIIRDYLSNRSFRYRVEGTRSRPRHVTAGVPQGSALSPLLFSLYINDIPRSPETHLALFADDTAIYYSCRKKALLHRRLQTAATTMGQWFRKWRIDINPTKSTAVLFKRGRPPNTTLSIPLPTRRVNTSAPAVRPITMFDQPIPWAPKVKYLGVTLDSRMTFRPHIKTVRDRAAFILGRLYPMISRRSKMSLRNKVTLYKTCIRPVMTYASVVFAHAARIHLKSFQVIQSRFCRIAVGAPWFVRNVDLHDDLDLRVHQ

Summary

EMBL
AB018558    BAA76304.1    AB055391    BAB21761.1    U07847    AAA17752.1    + More
KC165845    AFY12622.1    KQ459259    KPJ02068.1    KQ459265    KPJ02064.1    AF081103    AAC72921.1    AF081101    AAC72919.1    KQ459580    KPI99178.1    GEZM01008457    JAV94772.1    GGMR01019198    MBY31817.1    ABLF02014862    ABLF02014866    ABLF02061908    KQ973342    KXZ75569.1    GALX01005359    JAB63107.1    ABLF02008933    KK117880    KFM71667.1    GGMS01004685    MBY73888.1    GFTR01008038    JAW08388.1    KQ971729    KYB24751.1    ABLF02029306    ABLF02029314    ABLF02060138    ABLF02003961    ABLF02059872    ABLF02042518    ABLF02057746    ABLF02033757    GBBI01004571    JAC14141.1    NEVH01005938    PNF38077.1    NEVH01000280    PNF43672.1    NEVH01001355    PNF42855.1    GALX01005299    JAB63167.1    GEZM01038405    JAV81653.1    NEVH01010546    PNF32261.1    NEVH01007443    PNF35684.1    NEVH01023962    PNF17612.1    NEVH01003017    PNF40781.1    NEVH01018383    PNF23463.1    NEVH01021586    NEVH01006600    NEVH01002584    PNF19589.1    PNF37419.1    PNF41868.1    NEVH01020071    PNF21969.1    JRES01000644    KNC29657.1    NEVH01015305    NEVH01006671    PNF27154.1    PNF37357.1    NEVH01017559    PNF23833.1    GBBI01004395    JAC14317.1    GGMR01018716    MBY31335.1    NEVH01019964    PNF22161.1    NEVH01006754    PNF36554.1    NEVH01023961    PNF17613.1    NEVH01007838    PNF34986.1    GGMR01016114    MBY28733.1    KK113014    KFM59099.1    NEVH01014858    PNF27387.1    RPOV01000134    RPJ78669.1    NEVH01002716    PNF41415.1    GGMR01003407    MBY16026.1    JXUM01155316    KQ572171    KXJ68070.1    NEVH01011985    PNF31054.1    NEVH01027074    PNF13841.1    NEVH01009134    PNF33528.1    ABLF02066620    NEVH01026154    PNF14491.1    NEVH01017470    PNF24199.1    GGMS01008766    MBY77969.1    NEVH01006736    PNF36716.1    NEVH01019376    PNF22596.1    KL813758    KFM83187.1    NEVH01019080    PNF22876.1    S59870    AAB26437.2    GGMS01000737    MBY69940.1    NEVH01021205    PNF19912.1    ABLF02008463    GGFJ01002256    MBW51397.1    GGFJ01001858    MBW50999.1    GGFJ01002257    MBW51398.1    GGFJ01001857    MBW50998.1    NWSH01000032    PCG80497.1    GGFJ01001842    MBW50983.1    GGFJ01001843    MBW50984.1    GGFJ01001844    MBW50985.1    GGMR01000676    MBY13295.1    NEVH01016302    PNF25823.1    AF012049    AAC24972.1    NEVH01006721    PNF37225.1    KK115908    KFM66338.1    NEVH01012084    PNF30905.1    GGMS01017914    MBY87117.1    GGMS01002992    MBY72195.1    KK117974    KFM71881.1    NEVH01020963    PNF20308.1    GGMS01012362    MBY81565.1    GEZM01053022    JAV74219.1    ABLF02024246    LBMM01010106    KMQ87671.1    ABLF02008153    ABLF02008462    ABLF02008464    NEVH01026386    PNF14434.1    GGMS01012005    MBY81208.1    GFXV01006424    MBW18229.1    GFXV01007093    MBW18898.1    PCG80496.1    NEVH01020940    PNF20481.1    NEVH01000598    PNF43535.1    KQ973134    EFA13663.2    GFTR01008262    JAW08164.1    GGMR01004661    MBY17280.1   
Pfam
PF14529   Exo_endo_phos_2        + More
PF00078   RVT_1
PF10551   MULE
PF07530   PRE_C2HC
PF03372   Exo_endo_phos
Interpro
IPR000477   RT_dom        + More
IPR005135   Endo/exonuclease/phosphatase       
IPR036691   Endo/exonu/phosph_ase_sf       
IPR018289   MULE_transposase_dom       
IPR006579   Pre_C2HC_dom       
IPR036875   Znf_CCHC_sf       
SUPFAM
SSF56219   SSF56219        + More
SSF57756   SSF57756       
Gene 3D
PDB
6AR3     E-value=0.0018017,     Score=98

Ontologies

Topology

Length:
389
Number of predicted TMHs:
0
Exp number of AAs in TMHs:
0.38125
Exp number, first 60 AAs:
0.00092
Total prob of N-in:
0.01922
outside
1  -  389
 
 

Population Genetic Test Statistics

Pi
39.496336
Theta
16.863923
Tajima's D
1.274754
CLR
0.0139
CSRT
0.744762761861907
Interpretation
Uncertain

Multiple alignment of Orthologues

 
 

Gene Tree

 
 
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