SGID Silkworm Genome Informatics Database
Gene
KWMTBOMO08798
Annotation
PREDICTED:_torsin-like_protein_isoform_X2_[Bombyx_mori]
Full name
Torsin       + More
Torsin-like protein      
Location in the cell
Cytoplasmic   Reliability : 1.88
 

Sequence

CDS
ATGTTTTTAAGTAGCACGTTATCTGAACCAATCACGATATCTTTAGTTGGATCAGCTATCGTTCTTGCTAGCGGATGGTATAAATGGGATACTTTAAAGGATGCCACATATTGTAAATTTACAGAATGTTGTAATGATTATCACATACCTTTTGATGTACAAAAATTGAGAGATTCTCTTTCACAGCGAATGTTTGGTCAGCCACTGGTCAATGAACTTTTCAATATTATCTCAGCTCACAAAGAGAATATTAATGAAAGCAATGGGAACAAGAAAGCTCTAGTAATAAGTCTCCATGGCTGGTCAGGTGTTGGTAAAAATTTTGCCTCTACAATGATTGCCGAAGCTATCTATCGCAAAGGCATGCAGAGCAACTATGTAAAACTATTTATGGGTAAAAAAGATTTCGATTGCTATGAATTGGAAAAGAAAAAACAAATGTTAGTTAATACATTGAACACTCTGGTGAAGAAATGTCCCAAATCTCTGATTATCTTTGATGAGATACATCACATGTGTCCATCAGTGCTTGATACAATAATACCAATGCTCGATCACCACAGTGCTGTTGATGAGGTGGATTATAGAAACACCATCTTTATTTTTATATCAAACATAGGAGGACATGAAATAGCAACAAAGCTTTTAGAACTCTACGAAAAAGGTGTAACTCGATCAGAAGTTGAATTCCGTGATTTTGAACCTATCATTCGGAGGACAGCATATTTCCAAGGTGGCTTCGAGAAAGCGGCCGCCATTGCACACCATTTGATCGATCACTATGTACCTTTTTTACCCTTGGAACAACATCACGTCGAAATGTGTGCACTTGCAGAATTTAAAGCTAACGGCGTTGAAAAGCCGTCGAAGAAAATGATGGCGGATGCCTTAACTGTTATAACATACGGTCCGCCAGAGACTCAACCTATTTTTGCAAATAATGGATGCAGACGATTCACAAGACACATTCCATATGTAATAAAAAAGCACACTAGAAAAACAGAATTATGA
Protein
MFLSSTLSEPITISLVGSAIVLASGWYKWDTLKDATYCKFTECCNDYHIPFDVQKLRDSLSQRMFGQPLVNELFNIISAHKENINESNGNKKALVISLHGWSGVGKNFASTMIAEAIYRKGMQSNYVKLFMGKKDFDCYELEKKKQMLVNTLNTLVKKCPKSLIIFDEIHHMCPSVLDTIIPMLDHHSAVDEVDYRNTIFIFISNIGGHEIATKLLELYEKGVTRSEVEFRDFEPIIRRTAYFQGGFEKAAAIAHHLIDHYVPFLPLEQHHVEMCALAEFKANGVEKPSKKMMADALTVITYGPPETQPIFANNGCRRFTRHIPYVIKKHTRKTEL

Summary

Description
May serve as a molecular chaperone assisting in the proper folding of secreted and/or membrane proteins.
Similarity
Belongs to the ClpA/ClpB family. Torsin subfamily.
Keywords
ATP-binding   Chaperone   Complete proteome   Endoplasmic reticulum   Glycoprotein   Nucleotide-binding   Polymorphism   Reference proteome   Signal  
Feature
chain  Torsin
EMBL
ODYU01005599    SOQ46601.1    KQ459596    KPI95510.1    KQ461195    KPJ06701.1    + More
GAIX01000454    JAA92106.1    JTDY01001240    KOB74437.1    RSAL01000266    RVE43254.1    AGBW02011012    OWR47382.1    NWSH01000179    PCG78693.1    CH477304    EAT44169.1    GFDG01002879    JAV15920.1    GFDG01002881    JAV15918.1    GFDG01003190    JAV15609.1    GFDG01003191    JAV15608.1    GFDG01002882    JAV15917.1    GFDG01002880    JAV15919.1    AAAB01008839    GFDL01000975    JAV34070.1    KA644792    AFP59421.1    GAKP01005351    JAC53601.1    GGFM01006075    MBW26826.1    CCAG010017454    GGFM01004862    MBW25613.1    GGFJ01006806    MBW55947.1    GEZM01025083    JAV87599.1    GAMC01001936    JAC04620.1    GDHF01020298    JAI32016.1    EAA05928.4    GQ326645    GQ326646    GQ326647    GQ326649    GQ326651    GQ326656    GQ326659    ACU26618.1    ACU26619.1    ACU26620.1    ACU26622.1    ACU26624.1    ACU26629.1    ACU26632.1    GQ326648    GQ326652    GQ326653    GQ326654    GQ326655    GQ326658    GQ326663    ACU26621.1    ACU26625.1    ACU26626.1    ACU26627.1    ACU26628.1    ACU26631.1    ACU26636.1    GQ326662    ACU26635.1    CM000162    EDX01188.1    GQ326660    GQ326661    AE014298    ACU26633.1    ACU26634.1    AHN59337.1    AM999060    AM999061    AM999062    AM999063    AM999064    AM999065    AM999066    AM999067    AM999068    AM999069    FM246173    FM246174    FM246175    FM246176    FM246177    FM246178    FM246179    FM246180    FM246181    FM246182    FM246183    FM246184    AF236156    AL031766    AY069592    BT003553    GQ326650    GQ326664    ACU26623.1    ACU26637.1    GAPW01002423    JAC11175.1    GEHC01000389    JAV47256.1    JXJN01012727    ADMH02002133    ETN58446.1    GQ326657    ACU26630.1    JRES01000767    KNC28465.1    GBXI01016974    JAC97317.1    GEDV01006290    JAP82267.1    JYDO01000032    KRZ76027.1    CH933812    EDW06153.2    GFPF01012536    MAA23682.1    JYDS01000074    KRZ27178.1    JYDK01000038    KRX80748.1    GAMD01002227    JAA99363.1    CVRI01000057    CRL01913.1    JYDI01000110    KRY52161.1    GACK01002128    JAA62906.1    UFQS01000118    UFQT01000118    SSX00022.1    SSX20402.1    GDHF01031045    JAI21269.1    KQ971312    EEZ98367.1    GEFH01002396    JAP66185.1    KQ979568    KYN21025.1    UYYG01001229    VDN60649.1    CH954180    EDV45827.1    JW872880    AFP05398.1    GDRN01039269    JAI67199.1    JYDJ01000084    KRX45007.1    JH712075    EFO26311.1    JYDT01000114    KRY84418.1    KK107487    QOIP01000006    EZA50031.1    RLU21666.1    KRZ76028.1    GBBM01005234    JAC30184.1    CP012528    ALC49600.1    JO841197    AEO32814.1    CH963925    EDW78479.1    CM000366    EDX17090.1    GFWV01022656    MAA47383.1    CH480819    EDW53149.1    CH940655    EDW66141.2    ABJB010030699    ABJB010242574    ABJB010333825    ABJB010377240    DS668357    EEC03428.1    GL765940    EFZ15825.1    ADTU01015037    JYDR01000100    KRY68971.1    JW869937    AFP02455.1    UYRW01000287    VDK65395.1    CMVM020000346    GFDF01004049    JAV10035.1    OUUW01000003    SPP77680.1    CH379064    EAL32230.3    GL437652    EFN70225.1    GADI01004456    JAA69352.1    LN856856    CRZ23294.1    KQ976574    KYM80362.1    NEVH01010478    PNF32486.1   
Pfam
PF06309   Torsin        + More
PF17862   AAA_lid_3
PF02709   Glyco_transf_7C
PF00004   AAA
PF13733   Glyco_transf_7N
PF08615   RNase_H2_suC
Interpro
IPR027417   P-loop_NTPase        + More
IPR010448   Torsin       
IPR003593   AAA+_ATPase       
IPR001270   ClpA/B       
IPR017378   Torsin_1/2       
IPR030553   Torsin-like       
IPR003960   ATPase_AAA_CS       
IPR003859   Galactosyl_T       
IPR029044   Nucleotide-diphossugar_trans       
IPR003959   ATPase_AAA_core       
IPR027995   Galactosyl_T_N       
IPR027791   Galactosyl_T_C       
IPR041569   AAA_lid_3       
IPR030549   Torsin-1A       
IPR013924   RNase_H2_suC       
SUPFAM
SSF52540   SSF52540        + More
SSF53448   SSF53448       
Gene 3D
PDB
5J1S     E-value=3.68966e-38,     Score=396

Ontologies

Topology

Subcellular location
Endoplasmic reticulum lumen  
Length:
336
Number of predicted TMHs:
0
Exp number of AAs in TMHs:
6.06515
Exp number, first 60 AAs:
5.74322
Total prob of N-in:
0.04948
outside
1  -  336
 
 

Population Genetic Test Statistics

Pi
204.251105
Theta
233.320918
Tajima's D
-1.850012
CLR
1856.882961
CSRT
0.0266986650667467
Interpretation
Uncertain
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