SGID Silkworm Genome Informatics Database
Gene
KWMTBOMO08780
Pre Gene Modal
BGIBMGA007885
Annotation
PREDICTED:_probable_Ras_GTPase-activating_protein_isoform_X2_[Amyelois_transitella]
Location
Bomo_Chr15(-):5152443-5196618      View in EpiBrowser
Location in the cell
Nuclear   Reliability : 4.217
 

Sequence

CDS
ATGGACCTAGGCCCTCCGAATCAGGTTGAAATACGCGCGCTTCATTCGTCAGTACTGGGCAGAGCGCATTGCTTCGCGCTGAGCGCAGAGAACCGCGCACCTCGATACTTCGCTTGTGCTTCCAGAAAGGAGCGAGACCGGTGGATATACAGTTTGCGACAAGCGGCCCGACCGGACGAGATGCGGACGCGACGGTGCGAGCGGACTGTCAAGCTGTGGTTGTTGGAAGCCAAGGCCATACCACCGAAGAAGCGGTATTACTGCGAGATCATGCTCGATGAAACATTATATGCAAGGTCATCGTCAAAGCTGAAGACCGAGTTGTGTTTCTGGGGCGAAGTGTACGAGTTCAGCGGTCTGCCGGCCGTGCGCGCGATACACGTGAACGTGTACCGCGAGCCGGAACGACGCAGCCGGAAACGAGACAAGCACGCTCTTGTCGGCACAGTGCGCATCCCGGTCGACGACGTATCGTCGCGATACCTCAACGAGCGGTGGTACGCGCTGTCGGAGAGCGACAAGCCGCAGTCCCCCGGCGCCCGCGCCCCACCGCCCCCCGCGCCCGCCCTGCGCATCAAGTGTCGCTACCAGTGCGTGGACGTGCTGCCGCTGGACTGCTACGCGAGGTTCCTCGACTACCTCAAGAGGAATTACAGGCGGCTCTGCGAATATCTAGAGCCTGTTATCGGCGTGAAGGCGAAGGAGGACATCGGGTGCGCGCTGGTGCTGTGCATGGCGGGCGCGGGGATGGCGCCGCGGTACCTGGCCGACGTGGTGGCGCTGGACGTGCGCCGCACCGGCGACCACTCGCTCACCTTCCGCGGGAACTCGCTCGCCACCAAGAGCATGGAGGCCTATCTCAAGCTCGTCGGCGATCAGTATCTACAGGACACACTAGGCGAGGCGGTGGCCGCGGCGGCCGGTCCCGCGGCTGTGGAGTGCGAGGTGGATCCCCTCCGGACGAGCAGCAATGCAGCCCTCCGCAGACAACAGACGGCTCTGAGAGACGCCGTGACGCTTGCCTGGAGATCTATTGCGTCATCAGCGCCACACTTCCCACCACCTCTGAGGGACTGTTTCGCTACCTTCCGAGAAAGATTGACTTCGATGGGACGAGAAGACATCTCTGACAACCTGATCAGCGCGTCCATATTCCTTCGCTTCCTATGTCCAGCTATATTGTCTCCCAGCCTTTTTGGAATTACTCACGAATACCCGAACGAGCGCGCGGCACGTAACTTGACGTTGGTCGCGAAGACGCTGCAGACGTTGGCGAACTTCACGCGGTTCCAGGGGAAGGAGGCCTTCATGGAGTTCCTAAACGACTTCCTCGAACAAGAGGCGCCTAATATGAAAGCCTTCCTTAGGACTATTTCCTCACGTCCACCAGCGCCCGAGCAGCAGATCCCAACGCAGCCACAGGAAGGCAGCAACAGAAATTCGTCGTCTTCCCAAGGCTCCCTCCCGGGCGAGGGTCCGCGCGGAGACGCCTCCGTGGAGCCTGACCCGGAATGGGCGCCTCACGTCGACTTGGGCAAACAACTGGCAACACTGCACGGGCTGCTCGTTGACAGCTTGCCGAAATTGCCAGCCGCTAAAATTCAGGAACTGGATCCACTAAATGATATATTAGACGAACTAAGTAAGAGGCTGGTGAACAACGATATTTCGATTACACAGCAAGTCACTGACAACATATTTAGGTTCAACGACCCAACGTGCAATACCGCAACGTTACCAGCGAACCCAGAGCCGCCGCCGAACGTGCAGCTCACTAACAACTTCGCGCACAGCTCGCCGCTCACGAACAGAAACGGCGTCCAGTTCAACGTGAGCCCTTCGAAGTCGAACGCCGACGAAACGAAGCCCAAAGGACCGTATGTCGCCGTCTCGAAATCGCCGAGCTTCAATTTGCGCTCGGCAACGTTACCGAGAAACGGATACGGAAGTAACACCTCTAACGCGAACGTGAACCCCGATCGATACAGCTCTCAGTACAACAACCAGGAGCATTGCGTCAATTTGAAGGTCGTCCAGATCGGCTTCGGCTCGGATCAGTACGCTAAAGGTATCAGCAACGGCGTCAACGAAAGCCTAGAGAGGAGGATCCAGGAACGGTACAAACCGAACAACTACGCCCAACATTATCATAACGCGAACTACAACACGGAGAGATCGCCCAGCGGTGACAGCATCAACCACAACTACAGCTCCAACGAGAGACCGAACGTCATAAAGGAGACGGCCACTTTAGACGAACTCTCCGATTTGCTGAATTACGCCGACGAAGATCTATCCGAAGATAAACTGATCATGAACAAAAAGAACTTGGCTCAATCTAAAACGAATAACAACATTGTGAACGGAAACAAAACGAACTACGCCAACAACGGCTCGAACGTATCGATCAGCGGCCTCTCCAACGTGGCCAGCTCCGGCTACCAGAGCATCGCCACGTACAGCCAGAGCTCCAGTCCGGTCGAGAACCCGACTCACCAGCATCAGACCTTCGAGAACGGCGGCCAGCCCATGAGCCGGTATTCACAGCTCAACTACCAAAAGCAGAGAGACCGGCAGTACTACGACAGTAAAAACGAAAAGTTCTACCCGAAGAGCCCAGTGCAACAGAAGATCGAATACGACATTCAGAAATACGGGATACAGAACTTCACAACGGCCGACAACAACGCACACGCAAACGCCAACGTCAACGCAAAGATGGCGCCGCTGGTGTTCACTAACCCGGTATACAACATGGAGGACGGCCGTCAATCGCAAGAGAAAAAGACAAACGATAACAGAAACTCAAAGCGTTGCCCTTGCGGCTCGTCCAGTTCATCGATCGATGAGGAGGGCTTGAGCACAGACAACGTGGAAACCAACTCGGAGGAGGGTTCTGCTAACTTCAACGAGGACGGCAGGAACTATGACCAACAGAACCGCAACAATACCCACCGAAAATTAACCAGAGATAATTGTAATTACGAAGATTTATACCAGAGAAGTAATCATAGTCACTCACCGAGAATCAGGGACGACGAGTCGTCGAGCAACTCGCCCAGCCTGCGGAAACACAGCAAGACGCGCATGCCCAGAACCAACCCGATGCTCTCTTATTCCACGAATCAAAACCAGTTGAACCTAAAACATTTCGGGCAAAGAGGAGACTCGTTGTACGAGAGCAAACCTCACCACATCTCGACCGACTCCGGCTACCCGATGAGCAGATCGGAATCGAACGTCGAAGAAGTCAACAAGGAAATGTACAGGTTACAGATATCGAGATCTCAGAAGGCGTTGTTCAATATGGAGAACACGAAAAATTCTCCAGAGAAATATACAATGACGGAAAGTGCAATAACCGAATCGAACTATCCGCTAGATCGGACTTATTCCGGAGCTAAGGTATCCGGCAGCAGGCTGAACGAGGATCTCGAAAGACAGCAAGATTATTATGGGGTTAGAGAACGAAGGGAGTCGCCTTCGCAGGGGATATTCAGTCGCGAGTCTCAGTCGAGCGAGGCGAGCGAGCGGGCGCTGGTCAGAACCGAACGGGAAGTCGCCGGTCGAGAGAAACTGCAGAGACGACTTAGTCTGGAGTCGGCGCGAGAGCTGACCGACAGCTCTGATGAGATCGAGGAGACGTTGTACAGCACCACCGGCCGACGCCGGATGAACAAACATCACAGGACCATTGAACAGTATGAACGAGAAATCGAAAGACTGAAATGCTCCGTCGAATTACTACGAGGGAGGTTGGGACCAACCGAACCAGGTCAAGATCACACCGATGCTAAAATGAAGGCTATAATTTCAAGGTTAATCTGTGTCGAGGAAGAATTGAGGAGGGAACAACGCAAGATGGCCGCCGCACTGTCCCACAAGCAACGAGTGATCGAAGCACAAGAACACCGTATCGCAGCTCTCGACGAGGCCAACACCAGGCTTCTCTCGGCTCTTGTTCACTTACAACAGAGAGCCCCCCACACTCCCACCACACATCCCACACATAACAACTCGCACCCGCCTTCTCACACACAGCACTCTCATCAAGAACTGCAAATATAA
Protein
MDLGPPNQVEIRALHSSVLGRAHCFALSAENRAPRYFACASRKERDRWIYSLRQAARPDEMRTRRCERTVKLWLLEAKAIPPKKRYYCEIMLDETLYARSSSKLKTELCFWGEVYEFSGLPAVRAIHVNVYREPERRSRKRDKHALVGTVRIPVDDVSSRYLNERWYALSESDKPQSPGARAPPPPAPALRIKCRYQCVDVLPLDCYARFLDYLKRNYRRLCEYLEPVIGVKAKEDIGCALVLCMAGAGMAPRYLADVVALDVRRTGDHSLTFRGNSLATKSMEAYLKLVGDQYLQDTLGEAVAAAAGPAAVECEVDPLRTSSNAALRRQQTALRDAVTLAWRSIASSAPHFPPPLRDCFATFRERLTSMGREDISDNLISASIFLRFLCPAILSPSLFGITHEYPNERAARNLTLVAKTLQTLANFTRFQGKEAFMEFLNDFLEQEAPNMKAFLRTISSRPPAPEQQIPTQPQEGSNRNSSSSQGSLPGEGPRGDASVEPDPEWAPHVDLGKQLATLHGLLVDSLPKLPAAKIQELDPLNDILDELSKRLVNNDISITQQVTDNIFRFNDPTCNTATLPANPEPPPNVQLTNNFAHSSPLTNRNGVQFNVSPSKSNADETKPKGPYVAVSKSPSFNLRSATLPRNGYGSNTSNANVNPDRYSSQYNNQEHCVNLKVVQIGFGSDQYAKGISNGVNESLERRIQERYKPNNYAQHYHNANYNTERSPSGDSINHNYSSNERPNVIKETATLDELSDLLNYADEDLSEDKLIMNKKNLAQSKTNNNIVNGNKTNYANNGSNVSISGLSNVASSGYQSIATYSQSSSPVENPTHQHQTFENGGQPMSRYSQLNYQKQRDRQYYDSKNEKFYPKSPVQQKIEYDIQKYGIQNFTTADNNAHANANVNAKMAPLVFTNPVYNMEDGRQSQEKKTNDNRNSKRCPCGSSSSSIDEEGLSTDNVETNSEEGSANFNEDGRNYDQQNRNNTHRKLTRDNCNYEDLYQRSNHSHSPRIRDDESSSNSPSLRKHSKTRMPRTNPMLSYSTNQNQLNLKHFGQRGDSLYESKPHHISTDSGYPMSRSESNVEEVNKEMYRLQISRSQKALFNMENTKNSPEKYTMTESAITESNYPLDRTYSGAKVSGSRLNEDLERQQDYYGVRERRESPSQGIFSRESQSSEASERALVRTEREVAGREKLQRRLSLESARELTDSSDEIEETLYSTTGRRRMNKHHRTIEQYEREIERLKCSVELLRGRLGPTEPGQDHTDAKMKAIISRLICVEEELRREQRKMAAALSHKQRVIEAQEHRIAALDEANTRLLSALVHLQQRAPHTPTTHPTHNNSHPPSHTQHSHQELQI

Summary

Uniprot
A0A2H1VR60   A0A194PRW8   H9JED8   A0A212FL19   A0A2A4K5K0   B0X328   + More
Pubmed
26354079    19121390    22118469   
EMBL
ODYU01003939    SOQ43309.1    KQ459596    KPI95494.1    BABH01002930    BABH01002931    + More
BABH01002932    BABH01002933    AGBW02007907    OWR54434.1    NWSH01000105    PCG79501.1    DS232306    EDS39530.1   
Proteomes
UP000053268    UP000005204    UP000007151    UP000218220    UP000002320   
PRIDE
H9JED8   
Pfam
PF12004   DUF3498        + More
PF00616   RasGAP
PF00168   C2
Interpro
IPR008936   Rho_GTPase_activation_prot        + More
IPR035892   C2_domain_sf       
IPR000008   C2_dom       
IPR001936   RasGAP_dom       
IPR011993   PH-like_dom_sf       
IPR023152   RasGAP_CS       
IPR021887   DUF3498       
IPR001849   PH_domain       
IPR039360   Ras_GTPase       
SUPFAM
SSF48350   SSF48350       
Gene 3D
2.30.29.30     2.60.40.150    
ProteinModelPortal
A0A2H1VR60   A0A194PRW8   H9JED8   A0A212FL19   A0A2A4K5K0   B0X328   + More
PDB
3BXJ     E-value=7.22589e-90,     Score=848

Ontologies

KEGG
105842021    K17633 RAS protein activator-like 2 | (RefSeq) ras GTPase-activating protein nGAP-like
GO
GO:0007165   GO:0043087   GO:0005515   GO:0003707   GO:0005634   GO:0003700   GO:0008270   GO:0043565   GO:0016876   GO:0043039  
PANTHER
PTHR10194  

Topology

Length:
1355
Number of predicted TMHs:
0
Exp number of AAs in TMHs:
0.01809
Exp number, first 60 AAs:
0.00036
Total prob of N-in:
0.00060
outside
1  -  1355
 
 

Population Genetic Test Statistics

Pi
281.750682
Theta
181.62426
Tajima's D
1.970287
CLR
0.41063
CSRT
0.878106094695265
Interpretation
Uncertain
Copyright@ 2018-2023    Any Comments and suggestions mail to:zhuzl@cqu.edu.cn   渝ICP备19006517号

渝公网安备 50010602502065号