Gene

KWMTBOMO08767  Validated by peptides from experiments

Pre Gene Modal

BGIBMGA007892

Annotation

Mitochondrial_ribosomal_protein_L30_[Operophtera_brumata]

Location

Bomo_Chr15(-):4748753-4749738      View in EpiBrowser

Location in the cell

Cytoplasmic   Reliability : 1.498 Mitochondrial   Reliability : 1.579 Nuclear   Reliability : 1.464

CDS

ATGAACGGAAAATTACTACGAAATTTTAATCCACTGGTTTCTATCATTCGATCAAAAGGTTATAAACATCCAGGAGGTATTCGTTACCCTGGGGGCATAACATACTATCCCAGATTCCCAGATTACAAAGATCCTGAAATAACTCCATCAAAGTTGTTCAGAGTAGAGCGAATTAAATCAAGCAAACATTTTCCATACTGGCAAAAAAGGATATTGGATGAATTGAAAATTCATGAGGAGACCAGAGTCACTGTGGTTAAAAATATACCAGAAATCAATGCTAAACTATGGAAAATCAAGCATTTGATTAAAATTACACCAATTGAATTTCCTTATGGAGAACCAACTGCAGATGATATAAACTACACAATCCTTAAAGAAAATGGTCAATGCTTGGTTACAAAAAAATTGGAACCGGAATTCGGCCAGATCCAGGCCCTAGAAGAATTTGATAGTGATAGAAAAAAGATGAATTCTACAACCATAAAAAGAGATACTAGACATAGATGGAATACAGGATATGGAGGGGGATTTTAA

Protein

MNGKLLRNFNPLVSIIRSKGYKHPGGIRYPGGITYYPRFPDYKDPEITPSKLFRVERIKSSKHFPYWQKRILDELKIHEETRVTVVKNIPEINAKLWKIKHLIKITPIEFPYGEPTADDINYTILKENGQCLVTKKLEPEFGQIQALEEFDSDRKKMNSTTIKRDTRHRWNTGYGGGF

Similarity

Belongs to the TCP-1 chaperonin family.

Uniprot

H9JEE5   A0A0L7LFS8   A0A2A4K8Y5   A0A1E1WH02   A0A3S2NKI8   A0A2H1WXK3   + More
A0A194QMB0   I4DL52   A0A212F5M7   A0A336M338   A0A3B0JY75   A0A1A9ZEK8   A0A1A9XBT0   A0A1I8NBC1   A0A1B0BDY2   A0A1L8DRH4   A0A1B0CCT7   W8C572   A0A1A9VCL6   B4R4J9   B4I0W9   B3MS73   A0A1B0FIV2   Q9W4I3   A0A034WHH0   A0A1W4U568   Q8SYI9   A0A1B0DRH4   A0A1I8PXK5   A0A0K8U7E3   B3NU50   A0A1A9WIM9   Q29G79   B4GW20   A0A1A9WZC4   B4JX57   B4Q037   A0A0L0CAI8   A0A1L8ED33   B4N291   B4MA81   A0A0K8TSD6   A0A0M3QZL7   A0A1L8ED32   B4L706   B4JX59   A0A1Y1KQ81   A0A1J1HZ82   U5EQI7   A0A0T6AWX3   A0A023EHE0   A0A182GMG7   D2A539   A0A1W4WXZ5   V5GLJ9   A0A1Q3FD20   Q17CV6   A0A182YA46   A0A1W4WN87   A0A2M3ZC77   B0WXT3   A0A2M3ZCT7   D6X4V9   A0A182WCV3   A0A182ITJ7   A0A2M4C0P3   A0A182RLN8   A0A2M4C0P2   A0A182Q2P9   A0A2M3ZCE9   A0A084WI48   T1DP19   W5J8U4   A0A182P8G0   A0A182MYE8   A0A182VN94   Q7Q8S3   A0A2M4AXB7   A0A2M4AWL7   J3JU30   A0A2M4AWQ0   A0A182FV10   A0A182K4Y6   A0A182X1T6   A0A182U1J6   A0A182HFQ1   A0A182LQ39   A0A2P8Z0C0   A0A1B6LYN7   A0A2S2QSE8   A0A0P4VW05   R4UM68   T1H9I4   A0A0V0G8Q3   E2AJD1   A0A069DPV9   A0A224XZP2   A0A023F1I1   A0A067QYE9   A0A2H8TZ04  

Pubmed

19121390    26227816    26354079    22651552    22118469    25315136    + More
24495485    17994087    10731132    12537568    12537572    12537573    12537574    16110336    17569856    17569867    26109357    26109356    25348373    15632085    17550304    26108605    26369729    28004739    24945155    26483478    18362917    19820115    17510324    25244985    24438588    20920257    23761445    12364791    14747013    17210077    22516182    23537049    20966253    29403074    27129103    20798317    26334808    25474469    24845553   

EMBL

BABH01002965    JTDY01001315    KOB74229.1    NWSH01000054    PCG80158.1    PCG80160.1    + More
GDQN01004771    JAT86283.1    RSAL01000014    RVE53268.1    ODYU01011831    SOQ57799.1    KQ461195    KPJ06673.1    AK402020    KQ459596    BAM18642.1    KPI95484.1    AGBW02010169    OWR49040.1    UFQT01000118    SSX20408.1    OUUW01000003    SPP77681.1    JXJN01012727    GFDF01005022    JAV09062.1    AJWK01007090    GAMC01001937    JAC04619.1    CM000366    EDX17089.1    CH480819    EDW53150.1    CH902622    EDV34628.1    CCAG010017454    AE014298    BT030799    AAF45968.1    ABV82181.1    GAKP01005352    JAC53600.1    AY071518    AAL49140.1    AJVK01020029    GDHF01029818    JAI22496.1    CH954180    EDV45826.1    CH379064    EAL32231.1    CH479193    EDW26865.1    CH916376    EDV95333.1    CM000162    EDX01189.1    JRES01000767    KNC28459.1    GFDG01002245    JAV16554.1    CH963925    EDW78480.1    CH940655    EDW66140.1    GDAI01000550    JAI17053.1    CP012528    ALC49599.1    GFDG01002243    JAV16556.1    CH933812    EDW06152.1    EDV95335.1    GEZM01081169    JAV61835.1    CVRI01000021    CRK91433.1    GANO01004263    JAB55608.1    LJIG01022640    KRT79492.1    GAPW01004800    JAC08798.1    JXUM01075592    KQ562895    KXJ74889.1    KQ971361    EFA05140.1    GALX01005994    JAB62472.1    GFDL01009657    JAV25388.1    CH477304    EAT44165.1    GGFM01005415    MBW26166.1    DS232173    EDS36743.1    GGFM01005537    MBW26288.1    KQ971381    EEZ97592.1    GGFJ01009732    MBW58873.1    GGFJ01009734    MBW58875.1    AXCN02001048    GGFM01005485    MBW26236.1    ATLV01023913    KE525347    KFB49892.1    GAMD01002345    JAA99245.1    ADMH02002040    ETN59803.1    AAAB01008933    EAA09955.3    GGFK01012090    MBW45411.1    GGFK01011667    MBW44988.1    APGK01043767    BT126742    KB741017    KB631644    AEE61704.1    ENN75254.1    ERL84939.1    GGFK01011811    MBW45132.1    APCN01005563    PYGN01000257    PSN49928.1    GEBQ01011184    JAT28793.1    GGMS01010849    MBY80052.1    GDKW01002776    JAI53819.1    KC632381    AGM32195.1    ACPB03006890    GECL01001718    JAP04406.1    GL439972    EFN66452.1    GBGD01003222    JAC85667.1    GFTR01002857    JAW13569.1    GBBI01003330    JAC15382.1    KK853197    KDR09964.1    GFXV01007691    MBW19496.1   

Proteomes

UP000005204    UP000037510    UP000218220    UP000283053    UP000053240    UP000053268    + More
UP000007151    UP000268350    UP000092445    UP000092443    UP000095301    UP000092460    UP000092461    UP000078200    UP000000304    UP000001292    UP000007801    UP000092444    UP000000803    UP000192221    UP000092462    UP000095300    UP000008711    UP000091820    UP000001819    UP000008744    UP000001070    UP000002282    UP000037069    UP000007798    UP000008792    UP000092553    UP000009192    UP000183832    UP000069940    UP000249989    UP000007266    UP000192223    UP000008820    UP000076408    UP000002320    UP000075920    UP000075880    UP000075900    UP000075886    UP000030765    UP000000673    UP000075885    UP000075884    UP000075903    UP000007062    UP000019118    UP000030742    UP000069272    UP000075881    UP000076407    UP000075902    UP000075840    UP000075882    UP000245037    UP000015103    UP000000311    UP000027135   

PRIDE

H9JEE5    Q9W4I3    Q8SYI9   

Pfam

PF00327   Ribosomal_L30        + More
PF01956   EMC3_TMCO1
PF00118   Cpn60_TCP1

Interpro

IPR016082   Ribosomal_L30_ferredoxin-like        + More
IPR005996   Ribosomal_L30_bac-type       
IPR036919   L30_ferredoxin-like_sf       
IPR002809   EMC3/TMCO1       
IPR002423   Cpn60/TCP-1       
IPR027410   TCP-1-like_intermed_sf       
IPR017998   Chaperone_TCP-1       
IPR002194   Chaperonin_TCP-1_CS       
IPR012721   Chap_CCT_theta       
IPR027413   GROEL-like_equatorial_sf       
IPR027409   GroEL-like_apical_dom_sf       

SUPFAM

SSF55129   SSF55129        + More
SSF48592   SSF48592       
SSF54849   SSF54849       
SSF52029   SSF52029       

Gene 3D

3.30.1390.20     1.10.560.10     3.30.260.10     3.50.7.10    

CDD

cd01658  Ribosomal_L30
cd03341  TCP1_theta

ProteinModelPortal

H9JEE5   A0A0L7LFS8   A0A2A4K8Y5   A0A1E1WH02   A0A3S2NKI8   A0A2H1WXK3   + More
A0A194QMB0   I4DL52   A0A212F5M7   A0A336M338   A0A3B0JY75   A0A1A9ZEK8   A0A1A9XBT0   A0A1I8NBC1   A0A1B0BDY2   A0A1L8DRH4   A0A1B0CCT7   W8C572   A0A1A9VCL6   B4R4J9   B4I0W9   B3MS73   A0A1B0FIV2   Q9W4I3   A0A034WHH0   A0A1W4U568   Q8SYI9   A0A1B0DRH4   A0A1I8PXK5   A0A0K8U7E3   B3NU50   A0A1A9WIM9   Q29G79   B4GW20   A0A1A9WZC4   B4JX57   B4Q037   A0A0L0CAI8   A0A1L8ED33   B4N291   B4MA81   A0A0K8TSD6   A0A0M3QZL7   A0A1L8ED32   B4L706   B4JX59   A0A1Y1KQ81   A0A1J1HZ82   U5EQI7   A0A0T6AWX3   A0A023EHE0   A0A182GMG7   D2A539   A0A1W4WXZ5   V5GLJ9   A0A1Q3FD20   Q17CV6   A0A182YA46   A0A1W4WN87   A0A2M3ZC77   B0WXT3   A0A2M3ZCT7   D6X4V9   A0A182WCV3   A0A182ITJ7   A0A2M4C0P3   A0A182RLN8   A0A2M4C0P2   A0A182Q2P9   A0A2M3ZCE9   A0A084WI48   T1DP19   W5J8U4   A0A182P8G0   A0A182MYE8   A0A182VN94   Q7Q8S3   A0A2M4AXB7   A0A2M4AWL7   J3JU30   A0A2M4AWQ0   A0A182FV10   A0A182K4Y6   A0A182X1T6   A0A182U1J6   A0A182HFQ1   A0A182LQ39   A0A2P8Z0C0   A0A1B6LYN7   A0A2S2QSE8   A0A0P4VW05   R4UM68   T1H9I4   A0A0V0G8Q3   E2AJD1   A0A069DPV9   A0A224XZP2   A0A023F1I1   A0A067QYE9   A0A2H8TZ04  

PDB

6GB2     E-value=3.22272e-15,     Score=194

KEGG

101739135    K02907 large subunit ribosomal protein L30 | (RefSeq) 39S ribosomal protein L30, mitochondrial

PATHWAY

03010    Ribosome - Bombyx mori (domestic silkworm)

GO

GO:0006412   GO:0003735   GO:0015934   GO:0005762   GO:0032543   GO:0016021   GO:0005739   GO:0005524   GO:0006457   GO:0051082   GO:0005737  

PANTHER

PTHR15892  

Subcellular location

Cytoplasm  

Length:

178

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.0002

Exp number, first 60 AAs:

0.0002

Total prob of N-in:

0.10243

outside

1  -  178

 

 

Pi

38.48824

Theta

38.208816

Tajima's D

0.022645

CLR

0.637933

CSRT

0.380880955952202

Interpretation

Uncertain