Silkworm Genome Informatics Database

Gene

KWMTBOMO08766 Validated by peptides from experiments

Pre Gene Modal

BGIBMGA007685

Annotation

PREDICTED:_cyclic_AMP-dependent_transcription_factor_ATF-6_alpha_isoform_X2_[Amyelois_transitella]

Location

Bomo_Chr15(+):4733249-4745713 View in EpiBrowser

Transcription factor

TF_bZIP

Location in the cell

Nuclear Reliability : 4.411

CDS

ATGGATGAGGATATTCTAATTGATAACAAAACTGGTTTTTATGGTGAAGATTTTCTAGATGAGCTCCTATCAAAGGACTACTGGCCTTCATTACTGGATGGAGCAGATGCATCGCCCAGTGAAATTCTAGCAGATGCAGCTCCAGTTCTTGTACCACCTATATCACCTGTGTTGAGTTTAAATTCATCTCAGAGCAGCGGTAATTGCGATTCTGGCAGTGACGATGACTCTAAAAATGGTTCGAATACATCAACAAGACAATCATCGAATTCACCCTGTGACTGGATGTTAAATTTGGATCAGGAGCCTACAAGCAACCTGAAACTTGAAGACGTGGAACTATTTTTACATAAAACAGGTCCATCAAATGTACAGCCAAAAGGCTACATACAAGATGCAGTTCACAAAGAAAAAAGGCCTGTCATGTCGATTGAAAACGGTGTTATCAAGGGTATCAAGACTGAGATTGAAAGCAGCGATACAAAAGTAACGTGCCCTATGACACACAAAGGAAATGGTTATGTTCAAAATGCATATTTTAAAGTTGTAAACGAAAATACATCATCATGTATTTTTGTTAAAGACGAAAACCAAATCAAATTAAATGATCAAATTAAGTTAGTTGTTCAACAAAAAAATTCCAAACATGAGAGATCTTTGAGTGTCATTCCATCACATTTAGTGCCATCAGAGAAAAATGCTAAAATTGCCTTAATACCAATACCACAGACTAAGCTTAACGATAAGAATGGACATTCCATTAAGGCAGTGTCTCCAAGAAGTAATACTTCGATCGTGATAAATACAGATCTTCCCTTAAGTGATAATGGATACGAAACAAAAGTACAAAACGGGACGATATGTACGACAGAACCAACGAATCCCAGTTTCGACGGTATTGATCTCTCTAGTTTAACTGCAAATGAAATAAGGGCATTGAAAAAACAACAACGGATGATAAAAAATCGCGAATCAGCTTGTCAGTCACGACAAAAGAAGAAAGAATATGTGACTGCGCTGGAACAACAATTACTGGAAGCACATCAGGAGATAGCAAGTCTACGACTCGAAAATAAGTTGTTGAGGGATCAACTCGACAGCAACGTAAGAAGTCGGAAGTTACCACGCCTCGATCCGTCGATATTAATACCTAAAAAGAACATAGCTGTTATCTTTGCTATGGTTTTTATGGTTTCACTGAACTGGAATGTCCTTGGGTGGAACTCAAAGCCATTCCTGAAACCGTCCCCAGAACGACAAAGCACGAGACATTTACTATGGGCTGATGAGAGCAGTGTGGAATTAGCTGAAAGTGATCAAATAACAAATAGCAGTTACGATTGCCAAAACATGACAAATCCTCTCGATTCTATATATGTAAACCAAACTGAGAGTATTAGGATAGCCGGAGACCTGAGTCGTTGGATTAGAGGAGGCAAGACTTTGAATTGGACCGAAAACAAGTTTCGACGAAAAAGAAGCGCATATATTAGTGAAGAAAAAATTAATGGTGGTATTTTAGAAACATACAAACTCTTTAACAAATTAAATTTGGAAGCGAACAATATCGATTTTCAAAACACAAGAAATCAGGTGCGTAACATCCGTGATAAGTCGCGACTGCGACGCCTTAGGCGGAATAATAAAGACATTGATTTCCCCGAGAGTTCTGTGATCGACTACGACCTGTACACAAAACCAATGAGAAAATCTATGAACGATATTAACATGGAGGACTTCGGAGAATGGAACACTCTGCTGCAGGCCCTGGACAGGCGCGACGACACCTTTTATGTGGTCGGAGTTGGGAAGGGCGAACACCTGCTGCTGCCTGCCGTCTCGCATAATGTCACTCGTCCTCCTAAAATGGCACTCATACTTCCTGCACGAAATGGAAATGATTCCATATTGAACGACCACGTGATGTTGATGCAAATAGATTGTTCTGTATTGAATACAACACTGGTGAAGCTCAGGTCGGACGCGCTTCCGGAAAGTTTAAGGAAAACTCAAACAAATGATAAAGTACGCAGTGACAAGTTCGATATTAAAAAAGTGAATAAAGAAACAATTGATGCTAGTCTCTCTAAAGTTCTACAAAATGCCAGCAATAATCTGCCTAATAACATAATTAAGAGAAATAAAATTTCTACTAACCTAGATTATGACATGATGTCGAATTACTTAATGTCTAAGGAAGACCCTAAACCAACTAATAAGGTCCAAAAGGTCCAGTATACAGAATCGAACAACGTCACTGTTAGTCCATGA

Protein

MDEDILIDNKTGFYGEDFLDELLSKDYWPSLLDGADASPSEILADAAPVLVPPISPVLSLNSSQSSGNCDSGSDDDSKNGSNTSTRQSSNSPCDWMLNLDQEPTSNLKLEDVELFLHKTGPSNVQPKGYIQDAVHKEKRPVMSIENGVIKGIKTEIESSDTKVTCPMTHKGNGYVQNAYFKVVNENTSSCIFVKDENQIKLNDQIKLVVQQKNSKHERSLSVIPSHLVPSEKNAKIALIPIPQTKLNDKNGHSIKAVSPRSNTSIVINTDLPLSDNGYETKVQNGTICTTEPTNPSFDGIDLSSLTANEIRALKKQQRMIKNRESACQSRQKKKEYVTALEQQLLEAHQEIASLRLENKLLRDQLDSNVRSRKLPRLDPSILIPKKNIAVIFAMVFMVSLNWNVLGWNSKPFLKPSPERQSTRHLLWADESSVELAESDQITNSSYDCQNMTNPLDSIYVNQTESIRIAGDLSRWIRGGKTLNWTENKFRRKRSAYISEEKINGGILETYKLFNKLNLEANNIDFQNTRNQVRNIRDKSRLRRLRRNNKDIDFPESSVIDYDLYTKPMRKSMNDINMEDFGEWNTLLQALDRRDDTFYVVGVGKGEHLLLPAVSHNVTRPPKMALILPARNGNDSILNDHVMLMQIDCSVLNTTLVKLRSDALPESLRKTQTNDKVRSDKFDIKKVNKETIDASLSKVLQNASNNLPNNIIKRNKISTNLDYDMMSNYLMSKEDPKPTNKVQKVQYTESNNVTVSP

Uniprot

A0A2A4K929 A0A2H1WXQ5 A0A437BS30 A0A194PQ91 A0A194QMB4

Pubmed

26354079

EMBL

NWSH01000054 PCG80162.1 ODYU01011831 SOQ57797.1 RSAL01000014 RVE53267.1 + More
KQ459596 KPI95482.1 KQ461195 KPJ06672.1

Proteomes

UP000218220 UP000283053 UP000053268 UP000053240

Pfam

PF00170 bZIP_1

Interpro

IPR004827 bZIP

ProteinModelPortal

A0A2A4K929 A0A2H1WXQ5 A0A437BS30 A0A194PQ91 A0A194QMB4

PDB

3A5T E-value=0.0169011, Score=92

KEGG

101739272 K09054 cyclic AMP-dependent transcription factor ATF-6 alpha | (RefSeq) cyclic AMP-dependent transcr

PATHWAY

04141 Protein processing in endoplasmic reticulum - Bombyx mori (domestic silkworm)

GO

GO:0006357 GO:0003700 GO:0035497 GO:0005634 GO:0012505 GO:0030968 GO:0045944 GO:0005789 GO:0016021 GO:0006355 GO:0043565 GO:0006811 GO:0016020 GO:0005509 GO:0050793 GO:0003676 GO:0016876 GO:0043039

Length:

756

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

1.09407

Exp number, first 60 AAs:

0.00057

Total prob of N-in:

0.02930

outside

1 - 756

Pi

25.842842

Theta

23.284243

Tajima's D

0.15558

CLR

1.771337

CSRT

0.411579421028949

Interpretation

Uncertain

Sequence

Summary

Ontologies

Topology

Population Genetic Test Statistics