Silkworm Genome Informatics Database

Gene

KWMTBOMO08761

Pre Gene Modal

BGIBMGA007682

Annotation

PREDICTED:_PDZ_domain-containing_protein_8_isoform_X2_[Bombyx_mori]

Location

Bomo_Chr15(+):4603919-4633686 View in EpiBrowser

Location in the cell

Nuclear Reliability : 2.163

CDS

ATGCCGGACTGGACTTGGATGTTGTTTTCGGCGCTATTCGGAGCTGTGTCTGCGCTAACTGTTCCACTGTTACTTCTCATGTATTACGTACGGCCGTTTGAAAAGAGAACTCAAGAACTGGACCAATTTAACATGCCAGTCACTTTGCCTCTGGAAATTCTGAACGAGCTTACACGTGGAGCCGGCAGCACTCCCGAGGGCGCTCTGAACGCGATGCTGCAGTTCATATTCCAACAAAGCACTGCTGATACTCGCTGGTTACGACGCCGTATGGCTACCGAACTAGCTGAGTTGCTTGCTAAAACATCTTCAGGAAAGATATTTGAATCTCTAACGCTACGTTCCTTGGAAGTTGGCACTGAGTTTCCTAGTATCAACAATCTTCACCTACTTAGCGGCGAATTGGAGGAAGATGGGGCAAGACTCAGGTCCTTGGATCTAAAATTCGATCTTGCCTACGACGGAAACTTCAGGATTGACGTAGACGCTGTGATGCTGCTCGGCAAGATTGCTAATATATCGATTACTGTTGAAAGTCTAAGCGGCAATGTACGACTCATGTTTCGACGCACTCCGTATACCCATTGGGCGCTTGCTTTTGAAGCGCCGCCAAAGTTGGAGTTGAAAGTCCGAGGTCGATTCCAAGGGCGGCAATTAAAGCCAAGACTGGCATCGCTGGTCGCGGCCCATATCAGGAGGGCAGTCGCACAACGGCACACCCTTCCCAATTATAAGATAAGATACAAACCATTCTTCCCAAAATCTGAGCCGGGTAGTGGAGAAGCTGATGACGGTCCCACCCCTCAAGGTCGACTGACGGTACGACTTGTCGAAGTTACCCGATTGCAGTGGGCAGGAGCGAATGGGACAGTAAGGGCTGCTTTAGCTGTGGATTCACATGCATGGGTATCCCTACGTCGTGGTGTTTTAGTGTTGGATGTAGTGTTGCCAGCAGTCTCCGGTCCGCTTGGCCTCGTTTGCTGCCAGGGTGTCGGCGTGGTGCTGGTAGATACAGTAGTGCCAATGTCGCCGGCATATCGCGCCGATTTACGACGAGACGATGTTGTACTGGCCATCGATAATAAGCCTATTAATAATGTCGCTCAGGTTGGCAAACTCCTTCGTCTGGTAGAAAGACGTGCTGTCACCGTGCGAGTTCGACGAGGCGGCAGTGGAAACTCAGCGCGCCGTGAAGACAACGCCGTCGAACCGAAACGGATCAAACCTAACTTTTCATTCAGAAGAGTTTCCGAAGTAATGGAGGGAGTTAGACTGCAGGGTATTAGAGCTGCGGCTTCTAAGAGTAATTTACAGGAATCCGAATCACCGGTTAAAGCTTCTGTTGAATCACACAACGAGACTGACGCACAATCCAAACCAAAAACAGAACCGGTTCGTCAACTTTCCAAGTCAAATGACCAGCCTTCACCTTCAGCCAATTTCGGTCTTCGTAAGCGCCGTTGTTCCGTGGAAAATAAATCTTCCGATAGTTCTGCGGGCAGCACACCACCGGCTTCTGGAGCCAGTACACCCTTACGACAGTCCACCGCTGTGAACAAAACCGTCAAACACCCCGAAATACCTATTATTAGAACTGATTCCTCCGAATGTAAAGTTACGGAGAGAGTTGAAACACTTTTAGATGATGATGAATTATTCGAAACAGGCGGCCCCAGACAATGCGAACATGTTGAGATATGCCAAATGTTTTTGACTAAAAGCATCCAGCTCAAGCCCATCATACCGTTTGATGAAGAAACCGAATTCAAATTGAACGAGAATCATAAATATTTAAATATAAACGTATGGGCAACGGTAACAGGAGAGAAAGATGAAGTTCTGTTGGGATACTTGAATATTCCACTAGCCGCGTTATTGAGCGAATGCCAGGACTCGACAGTTCCACATCATATGAAACGATATCAGTTTTTACCTCCCGATGTCGATATTAAATTTAGCAAAAGCCACAAACTGGCTTCACATGCAGGCTTCGAGCCATGTCTATGTTTTGGAGACGCTCTGGTTTGGTGGGAATGGGATGGGGCAGCTACTCGCAGCGCTCCTCGTCCTCCTGTGAAAGACTCAGCGCCTCCTCGGCCCCCCAAATTGACCAGAGCTGTTCACGATTTTGTACGAACTCACTTCCACAGATCTACTCAATGCGATTTTTGCAATAAAAAGATTTGGTTGAAAGACGCAATGCAATGCCGTAGTTGTGGTCTTTGTTGCCATAAAAAATGCGTTACAAAGTGTCAAGAGTCTTCGCCGTGCGTACCTAAACAAGACTTAGGCTTGAGCTGTCCTCCTCCTGAACTGATTATGACAGAAGCTGACTCGGTTCCCGATCCTGACTCCGACGAAGAACCCGATAGAAAAGATTCACTTGAAGTTCATGAAGAAGGCGGCGGCGCTATGAGCGCGCTGGTGGCGGGGCTACGGCGTGCTGGCTCTGCACACTCGCTCTCGGCTCCCAAAACGTCTGCTTCTTCCAGGTCCTTACCACCCTCACCAAGCCATACCCCCAGGAAGCAGTCGCTGGAGTCGGTGGGCAACCCGTTCGGCGCGTGTGGCGTGACGTGGGCACAGCGGGGCGACGTGAGCGCGGTGCTGGCGCCTGCGCTGCGCAGCGCTCTGCCGCCGGACGCGCTGCTCGCGGCCGCCAGGGACGCGGCGCCTGATCTCGCCGCCAGCCTCTCCGCTCAACAGATACACGATATGTTACTGGCAGTTCGTGAGGAATTATCAGCAGAAGATGCAAGTGACCCAGACGGGGCTGGTGGCGAAGGACGGGCATACGCACTAACAGCGCTGATGCTGCACTGCTGTGCCGCCGCACAACTAGCGCAGCAACGTGCTGACGCCGCACCTGATAACACCTAA

Protein

MPDWTWMLFSALFGAVSALTVPLLLLMYYVRPFEKRTQELDQFNMPVTLPLEILNELTRGAGSTPEGALNAMLQFIFQQSTADTRWLRRRMATELAELLAKTSSGKIFESLTLRSLEVGTEFPSINNLHLLSGELEEDGARLRSLDLKFDLAYDGNFRIDVDAVMLLGKIANISITVESLSGNVRLMFRRTPYTHWALAFEAPPKLELKVRGRFQGRQLKPRLASLVAAHIRRAVAQRHTLPNYKIRYKPFFPKSEPGSGEADDGPTPQGRLTVRLVEVTRLQWAGANGTVRAALAVDSHAWVSLRRGVLVLDVVLPAVSGPLGLVCCQGVGVVLVDTVVPMSPAYRADLRRDDVVLAIDNKPINNVAQVGKLLRLVERRAVTVRVRRGGSGNSARREDNAVEPKRIKPNFSFRRVSEVMEGVRLQGIRAAASKSNLQESESPVKASVESHNETDAQSKPKTEPVRQLSKSNDQPSPSANFGLRKRRCSVENKSSDSSAGSTPPASGASTPLRQSTAVNKTVKHPEIPIIRTDSSECKVTERVETLLDDDELFETGGPRQCEHVEICQMFLTKSIQLKPIIPFDEETEFKLNENHKYLNINVWATVTGEKDEVLLGYLNIPLAALLSECQDSTVPHHMKRYQFLPPDVDIKFSKSHKLASHAGFEPCLCFGDALVWWEWDGAATRSAPRPPVKDSAPPRPPKLTRAVHDFVRTHFHRSTQCDFCNKKIWLKDAMQCRSCGLCCHKKCVTKCQESSPCVPKQDLGLSCPPPELIMTEADSVPDPDSDEEPDRKDSLEVHEEGGGAMSALVAGLRRAGSAHSLSAPKTSASSRSLPPSPSHTPRKQSLESVGNPFGACGVTWAQRGDVSAVLAPALRSALPPDALLAAARDAAPDLAASLSAQQIHDMLLAVREELSAEDASDPDGAGGEGRAYALTALMLHCCAAAQLAQQRADAAPDNT

Uniprot

H9JDT5 A0A2A4K7V1 A0A2H1WQV1 A0A437BSB2 A0A194PPV4 A0A194QMA3 + More
A0A212EQZ9 D6WD07 A0A0N1IU17 A0A1Y1LUY4

Pubmed

19121390 26354079 22118469 18362917 19820115 28004739 + More

EMBL

BABH01002978 BABH01002979 NWSH01000054 PCG80149.1 ODYU01010377 SOQ55449.1 + More
RSAL01000014 RVE53263.1 KQ459596 KPI95476.1 KQ461195 KPJ06668.1 AGBW02013164 OWR43922.1 KQ971311 EEZ99089.2 KQ435712 KOX79378.1 GEZM01046197 GEZM01046191 JAV77433.1

Proteomes

UP000005204 UP000218220 UP000283053 UP000053268 UP000053240 UP000007151 + More
UP000007266 UP000053105

PRIDE

H9JDT5

Pfam

PF17820   PDZ_6        + More
PF00130   C1_1
PF00595   PDZ

Interpro

IPR001478   PDZ        + More
IPR031468   SMP_LBD
IPR041489   PDZ_6
IPR036034   PDZ_sf
IPR039275   PDZD8
IPR002219   PE/DAG-bd

SUPFAM

SSF50156 SSF50156

CDD

cd00029 C1

ProteinModelPortal

H9JDT5 A0A2A4K7V1 A0A2H1WQV1 A0A437BSB2 A0A194PPV4 A0A194QMA3 + More
A0A212EQZ9 D6WD07 A0A0N1IU17 A0A1Y1LUY4

PDB

4L9M E-value=0.00142931, Score=103

KEGG

101738715 no KO assigned | (RefSeq) PDZ domain-containing protein 8

GO

GO:1990456 GO:0005739 GO:0016021 GO:0006869 GO:0008289 GO:0051560 GO:0044233 GO:0035556 GO:0046872 GO:0005515 GO:0006096 GO:0005216 GO:0006811 GO:0016020 GO:0005509 GO:0050793 GO:0003676 GO:0016876 GO:0043039

PANTHER

PTHR21519

Length:

959

Number of predicted TMHs:

1

Exp number of AAs in TMHs:

25.5780899999999

Exp number, first 60 AAs:

22.5865

Total prob of N-in:

0.86557

POSSIBLE N-term signal

sequence

inside

1 - 6

TMhelix

7 - 29

outside

30 - 959

Pi

233.343043

Theta

173.18716

Tajima's D

1.1999

CLR

0.396237

CSRT

0.709764511774411

Interpretation

Uncertain

Sequence

Summary

Ontologies

Topology

Population Genetic Test Statistics