SGID Silkworm Genome Informatics Database
Gene
KWMTBOMO08759
Pre Gene Modal
BGIBMGA007895
Annotation
will_die_slowly_[Danaus_plexippus]
Full name
Protein will die slowly      
Location in the cell
Extracellular   Reliability : 1.874
 

Sequence

CDS
ATGGTGCCGCTAGGTCCCGTGCCAGGCCACCCTGCTGCACATCAAACTCACGGTGGCCCTTCAGCCAGCTTATCCGGTCCAAATTCATTATCACAATCTGCTCCACAGTCAAACAAGTCTTCAGTGGCGAAGCCGAACTATACCCTCAAATTCACTCTCGCTGGTCATACAAAGGCTGTGTCATCGGTAAAATTCAGTCCAAATGGAGAATGGCTGGCTAGCTCTTCTGCTGACAAACTTATTAAGATTTGGGGTGCATATGATGGTAAATTTGAAAAGACAATATCTGGCCACAAAATGGGGATCAGTGATGTGGCATGGTCCTCTGACAGCAGGTTGATTGTCAGTGCTAGTGACGATAAAACTTTAAAAGTTTGGGAACTTAGTTCAGGAAAATGTTTAAAAACGCTTAAAGGTCACAGTAATTATGTTTTTTGCTGTAACTTCAATCCACAAAGTAATCTAATTGTATCAGGCAGTTTCGATGAGAGTGTTCGGATATGGGATGTGAGAACAGGGAAATGTCTAAAACCATTACCGGCGCATTCAGATCCAGTTTCAGCTGTTCATTTCAACAGAGACGGGAGCCTAATCGTTTCTTCAAGTTATGATGGTTTATGTCGAATTTGGGATACAGCTTCAGGACAATGTCTTAAAACTCTAATAGACGATGACAACCCTCCTGTTTCGTTTGTTAAATTCTCACCGAATGGAAAATATATATTGGCGGCGACGTTAGACAACACACTCAAATTATGGGACTATAGCAGAGGAAAATGTTTGAAGACATATACGGGACACAAGAACGAAAAATATTGTATCTTTGCCAACTTTAGTGTCACTGGCGGGAAGTGGATAGTATCGGGATCAGAAGACAACTTGGTGTACATATGGAACCTTCAATCAAAGGAGATTGTACAGAGGTTGTCTGGACACACGGATACAGTTCTCTGCACGGCCTGCCACCCCACCGAAAACATTATCGCTTCGGCTGCCCTTGAAAACGACAAGACAATCAAACTATGGAAGAGTGATACTTAA
Protein
MVPLGPVPGHPAAHQTHGGPSASLSGPNSLSQSAPQSNKSSVAKPNYTLKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKMGISDVAWSSDSRLIVSASDDKTLKVWELSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVRTGKCLKPLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSRGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQSKEIVQRLSGHTDTVLCTACHPTENIIASAALENDKTIKLWKSDT

Summary

Description
Contributes to histone modification. May position the N-terminus of histone H3 for efficient trimethylation at 'Lys-4'.
Subunit
Core component of several methyltransferase-containing complexes. Component of the SET1 complex, composed at least of the catalytic subunit Set1, wds/WDR5, Wdr82, Rbbp5, ash2, Cfp1/CXXC1, hcf and Dpy-30L1 (PubMed:21694722). Interacts with Set1 (PubMed:21694722, PubMed:21875999, PubMed:22048023). Component of the MLL3/4 complex composed at least of the catalytic subunit trr, ash2, Rbbp5, Dpy-30L1, wds, hcf, ptip, Pa1, Utx, Lpt and Ncoa6 (PubMed:21875999). Interacts with Nup98 (PubMed:25310983).
Similarity
Belongs to the WD repeat WDR5/wds family.
Keywords
3D-structure   Complete proteome   Nucleus   Reference proteome   Repeat   WD repeat  
Feature
chain  Protein will die slowly
EMBL
ODYU01001750    SOQ38378.1    NWSH01000054    PCG80153.1    AGBW02013164    OWR43924.1    + More
KQ461195    KPJ06666.1    GAIX01003884    JAA88676.1    GU073311    ADE75588.1    KQ459596    KPI95474.1    AY461709    AAR97571.1    EZ424097    ADD20373.1    JXJN01009055    GDAI01002320    JAI15283.1    GBXI01002898    JAD11394.1    GAKP01000232    JAC58720.1    GDHF01027392    GDHF01009464    GDHF01009086    GDHF01001099    JAI24922.1    JAI42850.1    JAI43228.1    JAI51215.1    AJVK01027661    GFDF01008338    JAV05746.1    KK852930    KDR13642.1    NEVH01024952    PNF16280.1    GAMC01013734    JAB92821.1    KA648182    AFP62811.1    JRES01000262    KNC32884.1    PYGN01000508    PSN45145.1    KQ761783    OAD57064.1    CVRI01000042    CRK95559.1    FX985652    BBA84390.1    KQ414654    KOC65883.1    KQ434998    KZC13345.1    CH902632    EDV32811.1    LJIG01022751    KRT78910.1    GL448228    EFN85097.1    CP012528    ALC48493.1    GL435537    EFN73227.1    GECU01031530    GECU01020966    JAS76176.1    JAS86740.1    OUUW01000003    SPP77875.1    CH479192    EDW26583.1    CH379063    EAL32695.1    KRT06251.1    GEBQ01027977    JAT12000.1    CH916371    EDV92441.1    GBHO01013087    GBRD01010598    GDHC01018362    JAG30517.1    JAG55226.1    JAQ00267.1    ADMH02002044    ETN59784.1    CH477259    EAT45735.1    JXUM01145008    KQ569902    KXJ68490.1    KQ971312    EEZ98489.1    ATLV01013150    KE524842    KFB37358.1    GALX01002072    JAB66394.1    APCN01002042    KQ982080    KYQ60251.1    AAAB01008987    AAAB01007362    EAA01221.5    EAA02931.4    GECL01001837    JAP04287.1    CH954183    EDV45635.1    AXCN02000017    KQ981490    KYN41268.1    KQ979999    KYN18298.1    GL762454    EFZ21306.1    GL888292    EGI63050.1    KQ976401    KYM92306.1    ADTU01013602    ADTU01013603    CH963851    EDW75105.1    CM000162    EDX01359.1    UFQT01000038    SSX18434.1    GGFJ01007555    MBW56696.1    GFTR01005244    JAW11182.1    GBGD01002052    JAC86837.1    CCAG010006531    AE014298    AFH07217.1    EU670499    EU670500    EU670501    EU670502    CM000366    ACD56175.1    ACD56176.1    ACD56177.1    ACD56178.1    EDX16944.1    EU310367    EU310368    EU310369    EU310370    EU310371    ABY55475.1    ABY55476.1    ABY55477.1    ABY55478.1    ABY55479.1    CH933811    EDW06513.1    KRG07005.1    KRG07006.1    EU670523    EU670524    CH480825    ACD56179.1    ACD56180.1    EDW43997.1    AF233288    AL138972    AY118386    KK856547    PTY25998.1    CH940653    EDW62659.1    KRF80754.1    KRF80755.1    GFDL01014211    JAV20834.1    KK107260    QOIP01000001    EZA54175.1    RLU27624.1    NNAY01002098    OXU22091.1    AAZX01006344    GEZM01102903    JAV51734.1    GGLE01000359    MBY04485.1    GECZ01020209    JAS49560.1    GEDC01019332    JAS17966.1    JH431327   
Pfam
PF00400   WD40        + More
PF05821   NDUF_B8
Interpro
IPR019775   WD40_repeat_CS        + More
IPR036322   WD40_repeat_dom_sf       
IPR020472   G-protein_beta_WD-40_rep       
IPR017986   WD40_repeat_dom       
IPR001680   WD40_repeat       
IPR015943   WD40/YVTN_repeat-like_dom_sf       
IPR037866   Swd3/WDR5       
IPR008699   NDUFB8       
SUPFAM
SSF50978   SSF50978       
Gene 3D
PDB
5M25     E-value=3.21913e-168,     Score=1518

Ontologies

Topology

Subcellular location
Nucleus  
Length:
346
Number of predicted TMHs:
0
Exp number of AAs in TMHs:
0.001
Exp number, first 60 AAs:
0
Total prob of N-in:
0.00122
outside
1  -  346
 
 

Population Genetic Test Statistics

Pi
223.878201
Theta
186.451316
Tajima's D
0.606989
CLR
152.928306
CSRT
0.546322683865807
Interpretation
Uncertain
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