Gene

KWMTBOMO08758

Pre Gene Modal

BGIBMGA007897

Annotation

PREDICTED:_voltage-dependent_calcium_channel_type_A_subunit_alpha-1_isoform_X1_[Bombyx_mori]

Location

Bomo_Chr15(-):4313603-4357050      View in EpiBrowser

Full name

Voltage-dependent calcium channel type A subunit alpha-1       + More
Voltage-dependent L-type calcium channel subunit alpha      

Alternative Name

Protein cacophony
Protein nightblind A
Protein no-on-transient B

Location in the cell

PlasmaMembrane   Reliability : 4.354

CDS

ATGGATTTTTTTGTTGTGCTAACGGGTATCATCACGCAGACGCCGATGGTGCCCGAAGTCGACTTCAGGACCTTGCGTGCCATTAGGGTGCTGAGGCCCCTTAAATTAGTATCGGGCATTCCTAGTCTACAAGTGGTCCTGAAATCCATAATAAAGGCGATGGCCCCGTTGCTGCAGATAGGCCTGTTGGTGCTTTTCGCGATTGTTATCTTTGCCATCATCGGCCTCGAGTTCTACTCAGGGGCGCTGCATAAGACTTGTTATAGTTTAGAAGATATTAGTCAAATAGCAAATGAAGGTGACAGTGCGACACCGTGTAACGCTGATAACCAAACACTAGCTCCGTACGGGGCGAACGTTTGCAGAGATGACATCAGCACGTGTTTAGAGAAATGGGAAGGGCCAAACAGGGGCATCACGTCTTTCGATAATATCGGCTTCGCAATGCTCACTGTCTTCCAGTGCATCACCATGGAGGGCTGGACCGCCATTCTCTATTGGACAAACGACGCGCTGGGTTGTGCGTTCAACTGGATTTACTTTGTGCCTCTAATAGTATTGGGTTCATTCTTTATGCTCAATTTAGTTCTTGGTGTCCTTAGCGGTGAATTTGCTAAAGAAAGAGAGAAAGTCGAAAATAGACAAGAATTTCTTAAGCTACGAAGGCAGCAACAACTTGAGAAAGAGCTCAACGGTTACGTTGAGTGGATATGTAAAGCTGAGGAAGTTATATTAGCGGAAGAAAGAACAACAGAAGAAGAAAGAATGCATATAATAGAAGCACGGAGAAGAGCAGCTGCCAAAAAGAAATTAAAAAATTTAGGGAAAAGTAAAAGCACTGACACAGAGGAAGAAGAACAAGACGAGGAATGCGGGGACGACGGTTTTCTAAAAGGAAAATCGAGGTCGCCTGGCAAATGCGCAGATTTCTGGCGTGCTGAGAAGAGGTTTCGGTTTTGGATTAGGCATACGGTGAAAACCCAGTGGTTTTATTGGTCGGTCATCGTATTGGTGCTCTTCAACACGATATGTGTCGCCGTCGAGCACTATAATCAGCCCGAATGGCTTACTTCATTTTTATATTATGCAGAGTATGTATTTCTTGGTTTGTTTATGATGGAAATGATAGTTAAAATGTACGCACTGGGTCCACGAATTTACTTCGAATCTTCTTTCAACCGTTTCGACTGCGTTGTCATTTCCGGCTCAATCTTCGAGGTTGTGTGGTCGGAAGTGAAGGGCGGTTCCTTTGGTCTTTCTGTCTTGAGAGCTCTAAGACTGCTGAGGATATTCAAGGTCACAAAGTATTGGTCATCATTAAGGAACCTGGTGATATCTCTACTGAACTCAATGAGGTCTATCATTTCGTTGCTGTTCCTGCTGTTCTTGTTCATTCTTATCTTCGCTCTACTCGGCATGCAGCTCTTCGGAGGACAGTTCAACTTCGAGGAGGGCACGCCGGCGACCAACTTCAACACCTTTCCTATTGCGTTGCTCACTGTCTTCCAGATTCTCACAGGTGAAGATTGGAACGAGGTTATGTATCACGGCATCCAATCTCAAGGAGGTATTCAGAAGGGCATGCTGTACTCATTGTACTTTGTCGTTCTGGTCTTATTCGGCAACTACACATTGCTGAACGTGTTCCTTGCCATCGCTGTCGACAACTTGGCTAATGCCCAGGAACTGACAGCCGCCGAAGAGGAACAAGTCGAGGAAGACAAAGAGAAGCAGCAACAAGAATTGGAGAAAGAGATGGGTGCGTTACACGCGTTGGACGGGACTCCACCTGGAGTTGACTTAAGTCCGTCGTCGCCGGCGAGTAGGAAGAATAAAAAGAAAGAAGAGGCCAAAAAAGATGAAGATGAAGAGATACCAGACGGACCAAAACCAATGCTGCCATATTCGTCCATGTTTATTTTATCACCTACTAATCCAATAAGGAGAGGCGCACACTGGGTTGTAAATTTAAGATATTTTGATTTTTTTATCATGGTAGTTATATGTATGAGCTCTGCAGCTTTAGCAGCCGAAGATCCCGTACGCGAAAAAAGCAAATGGAACGAAATATTAAATTACTTCGATTACGCGTTCACGGGCGTTTTCACTGTGGAGATGCTGCTGAAGATCATCGATCTTGGCATCCTGTTCCACCCGGGTGCCTACCTCCGCGACCTCTGGAACATCATGGACGCCGCCGTCGTGATCTGCGCCCTCGTCAGCTTTGGCTTCGAGATCGGGGGCGTTAAAAGTGGCGCGGGTCAGAATCTGTCGACGATAAAGTCGTTGAGAGTGTTACGTGTGTTAAGACCGTTGAAAACTATAAAACGTGTTCCAAAACTAAAAGCAGTGTTCGACTGTGTCGTGAACTCTTTGAAGAACGTCATTAACATTCTCATTGTGTACATATTGTTTCAATTCATATTCGCCGTAATCGCGGTGCAACTTTTTAATGGTAAATTTTTTTTCTGCTCGGATATCAGTAAGAATACGAAGACAGACTGCCAAGGGTCGTACTTCGTGTACGAATCGAACAGCTTACTGCCGCGCATCCACAGGCGGACGTGGACGACGCAGTCCTTCCACTACGACAACGTCGCCTCCGCCATGCTGACGTTGTTCGCTGTACAGACGGGTGAAGGATGGCCACAAGTACTACAGAACTCGATGGCCGCAACGTACGAAGAAAGGGGACCCATACAAAATTTTCGTATAGAAATGTCCATATTTTATATAGTTTACTTCGTGGTGTTTCCATTCTTCTTCGTTAACATATTCGTAGCTCTGATTATTATAACGTTTCAAGAGCAGGGCGAAGCGGAATTGCAAGACGGCGAAATCGATAAGAATCAGAAATCATGTATAGACTTCACGATAGAAGCGAGACCTCTCGAAAGGTACATGCCAAGTAAAAGGGCGAGTTTTAAGTACAAAGTTTGGAGAATAGTCGTTTCCACGCCCTTCGAGTATCTCATCATGACCCTCATTGTCCTCAATACGTTATTGCTCATGATGAAGTTTCACGAGGCTCCACCACTACTCATGGACTCGTTAACATTCATGAATCTGGTCTTTACGATCTTCTTCCTTCTCGAGACTGTACTGAAGCTGATCGCCTTCGGTTGTACGAATTTTTTCAAAGACCCGTGGAATACTTTTGACTTCATCACGGTCATTGGAAGTATTATTGACGCCCTAATTATGGAGTTTGGCGAGAACACTTTCAACGTCGGCTTCCTTCGCTTGTTTCGGGCCGCTCGACTGATCAAGCTGCTCAGACAGGGTTACACCATCCGGATACTTCTCTGGACGTTCGTGCAGAGTTTCAAAGCCTTACCCTACGTGTGCCTTCTCATCGCGATGCTGTTTTTCATTTACGCCATCATCGGAATGCAGGTGTTTGGAAATATAGAATTAACGCCCGAGCAAGACATAAATAGGCATAATAACTTTCAGAGCTTTATTCAAGCCCTGATGCTTCTGTTCAGGTGTGCCACAGGTGAATCGTGGCCTAATATCATGTTAGCGTGCCTCAAACCAGCCAAATGTGACGGGCGCGCTGGCAAACCGCCACACGAAGCTTGCGGAAGCACCCTCGCTTATGCATACTTTGTATCGTTCATTTTCTTTTGTTCATTTCTCATGTTGAATTTGTTCGTCGCCGTAATTATGGATAACTTTGATTATCTAACGAGAGACTCGTCGATTCTCGGCGCCCATCATCTCGACGAATTCGTCAGGATATGGGCCGAGTACGATCCAAACGCAACAGGGAAAATTCATTACACAGAAATGTATGATATGTTAAAAAACATGGATCCCCCGTTGGGGTTTGGAAACAAATGCCCGAACAGACTTGCGTATAAGAAGCTAATTAGAATGAATATGCCGCTTGATGAAGAAGGAAAAGTTAACTTCACCACAACACTGTTTGCCTTAATAAGAGAAAATTTAAATATCAAGATGAGATCTGCTGAAGAAATGGATCAGGCAGACGAAGAACTCAGAGAAACAATAACCCACATATGGCCATTACAATCGAAGAAGATGCTCGACTTGCTGGTGCCTCGAAATGATGTCCTCAACCAAGGAAAACTAACAGTTGGAAAGATCTATGCTGGCCTTTTGATTTTAGAGAGCTGGAGATCAACTAGATTTGGCCAGACAGAACCACGGGGTGACCAGGCATACAACGAGAATAGCCCTACGGCGATTCAGCCGGTTTTGGAACTCCCAGGATCACACCACGCGTCAATGGAATCATTAGATGAAGGAAGGCTACAAGCCCCGCAGACTTACCAGAACGGACACCACGGAAGATCGTCCAGCTTAAGACGCACGCCAAGTCCAAGAAGAAGAGGGCATTACGGAGGTTATCATCACGACATTGGCTTCTCAGACACCGTTAGCAACGTCGTCGAGATAGTCAAGCATGAGCACCAGAGACACGGGCGAGCGCATCGAGCACCTCATCACTACTACCCACATGGGAAGGAGTGGAGGGCGCCGCACCCCACGACCAGCCTGAGCCAGCCCTCGCGATCGCCCAGCCCGCCACATCACACCTACGGTGGTGAGCGGGAGCGGGAACGAGACCGCGAGTGGCGGGAGTGGCGCGACCGGTCGTGGGAGCGCGAAGGCACCAGACGCGGTCGCGGCCGCCAGCTCCCGCCCACGCCCACCAAGCCGTCCACGCTACACGTCAAGCAGCAGCCACCATTCACAAGAATCAGCCACAGTCCTTCGCACTTATCACTAAGGCACACGGTCAGAGAACCCGTGGAGCCCTTACATGATGAGTACGAATACGGCAGAGAAGTTGAAAGACTGATACACCGAGATTATAGATCTAGAGAAAGACGCGTACGAACGTACGAGCCGGAGGTAACCGCGCGACCATACGAGGCTCCGCTGAGCTACGAGGCGGCGCTGGCGATGGGTCGCGGCGGAGGGGGCGGGGGTGGGGGGCGCGCGCTGCCGTCGCCGGCGCCGCGGCTGCCCAACGGGTACAAGCCGCGCGCACGCCACTCGGACTCGGACGAGGACGACTGGTGCTAG

Protein

MDFFVVLTGIITQTPMVPEVDFRTLRAIRVLRPLKLVSGIPSLQVVLKSIIKAMAPLLQIGLLVLFAIVIFAIIGLEFYSGALHKTCYSLEDISQIANEGDSATPCNADNQTLAPYGANVCRDDISTCLEKWEGPNRGITSFDNIGFAMLTVFQCITMEGWTAILYWTNDALGCAFNWIYFVPLIVLGSFFMLNLVLGVLSGEFAKEREKVENRQEFLKLRRQQQLEKELNGYVEWICKAEEVILAEERTTEEERMHIIEARRRAAAKKKLKNLGKSKSTDTEEEEQDEECGDDGFLKGKSRSPGKCADFWRAEKRFRFWIRHTVKTQWFYWSVIVLVLFNTICVAVEHYNQPEWLTSFLYYAEYVFLGLFMMEMIVKMYALGPRIYFESSFNRFDCVVISGSIFEVVWSEVKGGSFGLSVLRALRLLRIFKVTKYWSSLRNLVISLLNSMRSIISLLFLLFLFILIFALLGMQLFGGQFNFEEGTPATNFNTFPIALLTVFQILTGEDWNEVMYHGIQSQGGIQKGMLYSLYFVVLVLFGNYTLLNVFLAIAVDNLANAQELTAAEEEQVEEDKEKQQQELEKEMGALHALDGTPPGVDLSPSSPASRKNKKKEEAKKDEDEEIPDGPKPMLPYSSMFILSPTNPIRRGAHWVVNLRYFDFFIMVVICMSSAALAAEDPVREKSKWNEILNYFDYAFTGVFTVEMLLKIIDLGILFHPGAYLRDLWNIMDAAVVICALVSFGFEIGGVKSGAGQNLSTIKSLRVLRVLRPLKTIKRVPKLKAVFDCVVNSLKNVINILIVYILFQFIFAVIAVQLFNGKFFFCSDISKNTKTDCQGSYFVYESNSLLPRIHRRTWTTQSFHYDNVASAMLTLFAVQTGEGWPQVLQNSMAATYEERGPIQNFRIEMSIFYIVYFVVFPFFFVNIFVALIIITFQEQGEAELQDGEIDKNQKSCIDFTIEARPLERYMPSKRASFKYKVWRIVVSTPFEYLIMTLIVLNTLLLMMKFHEAPPLLMDSLTFMNLVFTIFFLLETVLKLIAFGCTNFFKDPWNTFDFITVIGSIIDALIMEFGENTFNVGFLRLFRAARLIKLLRQGYTIRILLWTFVQSFKALPYVCLLIAMLFFIYAIIGMQVFGNIELTPEQDINRHNNFQSFIQALMLLFRCATGESWPNIMLACLKPAKCDGRAGKPPHEACGSTLAYAYFVSFIFFCSFLMLNLFVAVIMDNFDYLTRDSSILGAHHLDEFVRIWAEYDPNATGKIHYTEMYDMLKNMDPPLGFGNKCPNRLAYKKLIRMNMPLDEEGKVNFTTTLFALIRENLNIKMRSAEEMDQADEELRETITHIWPLQSKKMLDLLVPRNDVLNQGKLTVGKIYAGLLILESWRSTRFGQTEPRGDQAYNENSPTAIQPVLELPGSHHASMESLDEGRLQAPQTYQNGHHGRSSSLRRTPSPRRRGHYGGYHHDIGFSDTVSNVVEIVKHEHQRHGRAHRAPHHYYPHGKEWRAPHPTTSLSQPSRSPSPPHHTYGGERERERDREWREWRDRSWEREGTRRGRGRQLPPTPTKPSTLHVKQQPPFTRISHSPSHLSLRHTVREPVEPLHDEYEYGREVERLIHRDYRSRERRVRTYEPEVTARPYEAPLSYEAALAMGRGGGGGGGGRALPSPAPRLPNGYKPRARHSDSDEDDWC

Description

Voltage-sensitive calcium channels (VSCC) mediate the entry of calcium ions into excitable cells and are also involved in a variety of calcium-dependent processes, including muscle contraction, neurotransmitter release, gene expression, cell motility, cell division and cell death (By similarity). Probably encodes a dihydropyridine-insensitive current. Vital for survival to adulthood.
Voltage-sensitive calcium channels (VSCC) mediate the entry of calcium ions into excitable cells and are also involved in a variety of calcium-dependent processes, including muscle contraction, hormone or neurotransmitter release, gene expression, cell motility, cell division and cell death.

Similarity

Belongs to the calcium channel alpha-1 subunit (TC 1.A.1.11) family.

Keywords

3D-structure   Alternative splicing   Calcium   Calcium channel   Calcium transport   Complete proteome   Developmental protein   Glycoprotein   Ion channel   Ion transport   Membrane   Metal-binding   Phosphoprotein   Polymorphism   Reference proteome   Repeat   RNA editing   Transmembrane   Transmembrane helix   Transport   Voltage-gated channel  

Feature

chain  Voltage-dependent calcium channel type A subunit alpha-1
splice variant  In isoform F, isoform D and isoform B.

Uniprot

A0A3S2TRM1   A0A2H1W7T8   A0A2W1BL04   C9D7C1   A0A2A4JPX4   A0A2A4JR31   + More
F5HKV0   Q7PGJ5   A0A084WTE7   Q17DG7   A0A0P6J3Y0   A0A182FNU6   F5HKU9   A0A1W4VUE9   A0A1W4VGD0   A0A182RBZ6   P91645-4   F5HKU8   A0A1S4G7N1   A0A0N8NZK2   P91645-5   A0A1W4VUF8   Q59E51   Q59E50   P91645-6   A0A1W4VGD5   A0A1W4VTN6   A0A0P9BS71   A0A1W4VT29   M9PHD4   M9NGZ9   A0A0C9QZL7   P91645-2   Q59E53   K7IRC4   Q59E52   A0A0P8XIC0   A0A0P8Y5Y9   A0A0P8ZIG1   B3N1D3   D6X3I7   P91645-3   A0A139WB25   A0A2S1ZNL3   A0A0P8ZIF7   A0A139WB57   A0A1J1JAK4   A0A1Y1LV85   C9D7C3   A0A139WB60   A0A139WBD2   A0A0P5NKK3   A0A0P5VUV7   A0A0P5MJ98   A0A182HSM6   A0A0P5MGZ4   A0A0P4YQC2   A0A0P5NBP2   A0A139WB50   A0A0P4YP50   A0A0P5MTX8   A0A139WB53   A0A0P5N2C8   A0A182Q6B0   A0A182Y6G6   A0A182W0Y9   A0A182XAS8   A0A0P5ASE1   A0A0P4YNQ8   A0A0P6DPE4   A0A0P5M813   A0A0N7ZND5   A0A0P5BTX3   A0A0P6DFB4   A0A0P6DKD0   A0A0P5NTM9   A0A0P5VV01   A0A0P5NR58   A0A0P6ERG3   A0A0P5HBS4   A0A1W7R5T1   A0A0P5UP63   A0A0N7ZPR6   A0A0P4YKB3   A0A0P5WPS2   A0A0P5MES4   A0A0P5VXY8   A0A0N8BNV7   A0A0P5UXD3   A0A0P4YEX5   A0A0P4XZ46   A0A0P4ZKH0   A0A0P5TII4   A0A0P5CR74   A0A0P5CNM0   A0A182P080   A0A0P4XKJ0   A0A0P6EUW8   A0A0P5UZJ2   A0A0P4XKI0  

Pubmed

28756777    12364791    24438588    17510324    26999592    8987815    + More
10731132    12537572    9093853    10966106    9649530    28742085    17994087    12537568    12537573    12537574    16110336    17569856    17569867    20075255    18362917    19820115    28004739    25244985   

EMBL

RSAL01000014    RVE53260.1    ODYU01006878    SOQ49117.1    KZ150017    PZC74961.1    + More
GQ202018    ACV86996.1    NWSH01000845    PCG73869.1    PCG73870.1    AAAB01008859    EGK96851.1    EAA44910.4    ATLV01026887    KE525420    KFB53491.1    CH477295    EAT44417.1    GDUN01001112    JAN94807.1    EGK96852.1    U55776    AE014298    U88664    U88665    EGK96850.1    CH902654    KPU74556.1    AAX52488.1    AAX52489.1    KPU74576.1    AGB95320.1    AFH07352.1    GBYB01006152    JAG75919.1    AAX52486.1    AAX52487.1    KPU74565.1    KPU74575.1    KPU74577.1    EDV33572.2    KQ971374    EEZ97399.2    KYB25148.1    MF359244    AWK26947.1    KPU74568.1    KYB25146.1    CVRI01000074    CRL08057.1    GEZM01046096    JAV77522.1    GQ202020    ACV86998.1    KYB25149.1    KYB25151.1    GDIQ01140957    JAL10769.1    GDIP01095973    JAM07742.1    GDIQ01155796    JAK95929.1    APCN01000300    GDIQ01155798    GDIP01094874    JAK95927.1    JAM08841.1    GDIP01228456    JAI94945.1    GDIQ01151253    JAL00473.1    KYB25147.1    GDIP01224611    JAI98790.1    GDIQ01151252    JAL00474.1    KYB25150.1    GDIQ01155797    JAK95928.1    AXCN02001457    GDIP01195116    JAJ28286.1    GDIP01224612    JAI98789.1    GDIP01102967    GDIQ01075625    JAM00748.1    JAN19112.1    GDIQ01159407    JAK92318.1    GDIP01228457    JAI94944.1    GDIP01195114    JAJ28288.1    GDIQ01078123    JAN16614.1    GDIQ01075626    JAN19111.1    GDIQ01159404    JAK92321.1    GDIP01094873    JAM08842.1    GDIQ01145557    JAL06169.1    GDIQ01059982    JAN34755.1    GDIQ01232224    JAK19501.1    GEHC01001270    JAV46375.1    GDIP01110219    JAL93495.1    GDIP01224609    JAI98792.1    GDIP01228407    JAI94994.1    GDIP01095972    JAM07743.1    GDIQ01159402    JAK92323.1    GDIP01093620    JAM10095.1    GDIQ01159403    JAK92322.1    GDIP01110218    JAL93496.1    GDIP01228406    JAI94995.1    GDIP01238614    JAI84787.1    GDIP01224608    JAI98793.1    GDIQ01091271    JAL60455.1    GDIP01167915    JAJ55487.1    GDIP01167917    JAJ55485.1    GDIP01240056    JAI83345.1    GDIQ01057533    JAN37204.1    GDIP01123117    JAL80597.1    GDIP01240007    JAI83394.1   

Proteomes

UP000283053    UP000218220    UP000007062    UP000030765    UP000008820    UP000069272    + More
UP000192221    UP000075900    UP000000803    UP000007801    UP000002358    UP000007266    UP000183832    UP000075840    UP000075886    UP000076408    UP000075920    UP000076407    UP000075885   

PRIDE

C9D7C1    P91645    Q59E51    Q59E50    M9PHD4    Q59E53    + More
Q59E52   

Pfam

PF08763   Ca_chan_IQ        + More
PF00520   Ion_trans
PF16905   GPHH

Interpro

IPR002048   EF_hand_dom        + More
IPR002077   VDCCAlpha1       
IPR011992   EF-hand-dom_pair       
IPR031649   GPHH_dom       
IPR005821   Ion_trans_dom       
IPR027359   Volt_channel_dom_sf       
IPR014873   VDCC_a1su_IQ       
IPR005446   VDCC_L_a1su       

SUPFAM

SSF47473   SSF47473       

Gene 3D

1.20.120.350    

ProteinModelPortal

A0A3S2TRM1   A0A2H1W7T8   A0A2W1BL04   C9D7C1   A0A2A4JPX4   A0A2A4JR31   + More
F5HKV0   Q7PGJ5   A0A084WTE7   Q17DG7   A0A0P6J3Y0   A0A182FNU6   F5HKU9   A0A1W4VUE9   A0A1W4VGD0   A0A182RBZ6   P91645-4   F5HKU8   A0A1S4G7N1   A0A0N8NZK2   P91645-5   A0A1W4VUF8   Q59E51   Q59E50   P91645-6   A0A1W4VGD5   A0A1W4VTN6   A0A0P9BS71   A0A1W4VT29   M9PHD4   M9NGZ9   A0A0C9QZL7   P91645-2   Q59E53   K7IRC4   Q59E52   A0A0P8XIC0   A0A0P8Y5Y9   A0A0P8ZIG1   B3N1D3   D6X3I7   P91645-3   A0A139WB25   A0A2S1ZNL3   A0A0P8ZIF7   A0A139WB57   A0A1J1JAK4   A0A1Y1LV85   C9D7C3   A0A139WB60   A0A139WBD2   A0A0P5NKK3   A0A0P5VUV7   A0A0P5MJ98   A0A182HSM6   A0A0P5MGZ4   A0A0P4YQC2   A0A0P5NBP2   A0A139WB50   A0A0P4YP50   A0A0P5MTX8   A0A139WB53   A0A0P5N2C8   A0A182Q6B0   A0A182Y6G6   A0A182W0Y9   A0A182XAS8   A0A0P5ASE1   A0A0P4YNQ8   A0A0P6DPE4   A0A0P5M813   A0A0N7ZND5   A0A0P5BTX3   A0A0P6DFB4   A0A0P6DKD0   A0A0P5NTM9   A0A0P5VV01   A0A0P5NR58   A0A0P6ERG3   A0A0P5HBS4   A0A1W7R5T1   A0A0P5UP63   A0A0N7ZPR6   A0A0P4YKB3   A0A0P5WPS2   A0A0P5MES4   A0A0P5VXY8   A0A0N8BNV7   A0A0P5UXD3   A0A0P4YEX5   A0A0P4XZ46   A0A0P4ZKH0   A0A0P5TII4   A0A0P5CR74   A0A0P5CNM0   A0A182P080   A0A0P4XKJ0   A0A0P6EUW8   A0A0P5UZJ2   A0A0P4XKI0  

PDB

5GJW     E-value=0,     Score=1883

KEGG

100306947    no KO assigned | (RefSeq) Cac; cacophony

GO

GO:0005262   GO:0016021   GO:0034765   GO:0005244   GO:0005891   GO:0005509   GO:0005245   GO:0007602   GO:0008331   GO:0031594   GO:0002027   GO:0010524   GO:0016322   GO:0008332   GO:0048786   GO:0006914   GO:0019722   GO:0006816   GO:0007632   GO:0042045   GO:0045433   GO:0016057   GO:0070050   GO:0050908   GO:0070588   GO:0008344   GO:0007269   GO:0016324   GO:0097352   GO:0007268   GO:0016323   GO:0007619   GO:0046928   GO:0045887   GO:0006887   GO:0070509   GO:0005216   GO:0006811   GO:0016020   GO:0050793   GO:0003676   GO:0016876   GO:0043039   GO:0055085  

Subcellular location

Membrane  

Length:

1685

Number of predicted TMHs:

18

Exp number of AAs in TMHs:

374.554399999998

Exp number, first 60 AAs:

4.06084

Total prob of N-in:

0.01875

outside

1  -  56

TMhelix

57  -  79

inside

80  -  145

TMhelix

146  -  168

outside

169  -  177

TMhelix

178  -  200

inside

201  -  327

TMhelix

328  -  350

outside

351  -  354

TMhelix

355  -  377

inside

378  -  453

TMhelix

454  -  476

outside

477  -  531

TMhelix

532  -  554

inside

555  -  654

TMhelix

655  -  677

outside

678  -  696

TMhelix

697  -  719

inside

720  -  725

TMhelix

726  -  748

outside

749  -  794

TMhelix

795  -  817

inside

818  -  909

TMhelix

910  -  932

outside

933  -  982

TMhelix

983  -  1005

inside

1006  -  1017

TMhelix

1018  -  1040

outside

1041  -  1054

TMhelix

1055  -  1077

inside

1078  -  1111

TMhelix

1112  -  1134

outside

1135  -  1153

TMhelix

1154  -  1176

inside

1177  -  1200

TMhelix

1201  -  1223

outside

1224  -  1685

 

 

Pi

247.93033

Theta

191.380218

Tajima's D

0.783185

CLR

0.629417

CSRT

0.602769861506925

Interpretation

Uncertain