Gene

KWMTBOMO08744

Pre Gene Modal

BGIBMGA007903

Annotation

PREDICTED:_tigger_transposable_element-derived_protein_6-like_[Acyrthosiphon_pisum]

Location

Bomo_Chr15(-):4069587-4071197      View in EpiBrowser

Location in the cell

Nuclear   Reliability : 2.67

CDS

ATGGCGTTCAGGACTAAACGCAAAGCATTTTCATTTCACGATAAATTGAAAATATTACAATATTACGACAAAAAATCACAAGATTACAAAAAATCTCAAATAGCAGCTGAACTTGAAATTCCTGTCTCAACACTATCGACGATTGTAAAATACAGGGCTGATGTAGAAAATAGATGTAAAAACATAAGTGGTGCATACTTAAAACGAAAGAAAAATAAAAGCGGTAAATATGTTGAAATTGAGAATGTTTTGATCGACTGGATCGTCAGTATGAACGCCCAGAATATTCCCCTGGACGGGCCAATGATGAAACAAAGAGCTTTAGAAATCGCTAAAGAATTAGAAGTCTACGATTTCACGGCTTCCAGTGGTTGGTACAGTCGTTTTAAGCAGCGCCACGCGTTCTCGTTAAACAATGACTTTGACAGTGATGACGGCTCCGACCTTACTTACGAATCCTATCAAGAACTAGTCAAAGACTATGAACCGTGTGATGTTTTTAATGCTGATGAATTCGGATTGTTTTACAAGCTAATGCCAAACGACATGTCTACTATAGTAGACAAGATATGTAAAGATGGTACAATGCCAGAAGAACGGTTCACAGTATTGGCATGTTCGAATTCTATTGGATCAGAAAAATTACCACTACTCATTATTGGTAATACTGAAAATTCAGATAAAGACTTGCCCTGCCAATATCAAGTTAACCCTAAGTCTTGGATGACAAAACTGGCTTTCACAAACTGGTTATACATTCTTGACGAATATTTTGAAATTCAGGGGAGATTGGTGGTATTGTTCGTCGATGAGAGTCCAGTGCATCCAAAGGACATAATCTTGAATAACATAAACTTGGTTATCATACCCCCTGAAGCTGAACATGAAATGCCTATGTCTCAAGGCATTATTAAGGTTATTAAGCAGAATTATAGGATCAAATTGATTGAAAAATACAAGGAGGGACTAGCTGTTGATTTTAAACAGTGCTTGAAATACCTCACTGATGTCTTTGAGTCCATTAAAGCTCATACAATTCAATCTTATTTTAAGAAATCCGGTTTCGGAGACTATTATGAGGTTGATGACGAGGATGACGAATACAAAGAACAAATACTGATGAAATACCAAGACTATTTGTATGTTGATTATGAATTAGCGACGTGTGAAGTAGAAAAAGGCGTTAACCAAGAATCAACATTTACAGATAATAATATAAAAGAAAAAGTTAATAAAATCATCATTAACAATGGTGAAACCATTGATAACAAATCAGTTACGGCGCTTCAAGCGGTCACTACATTGAAGCATTATTTAAAATCTTTAGATTCTGAAAATGGTCTCAACAATTTGTCTGTAATAGAAAGTATAATTTTAAGCTCGATTTCTAAAAATAATTCTATGTAG

Protein

MAFRTKRKAFSFHDKLKILQYYDKKSQDYKKSQIAAELEIPVSTLSTIVKYRADVENRCKNISGAYLKRKKNKSGKYVEIENVLIDWIVSMNAQNIPLDGPMMKQRALEIAKELEVYDFTASSGWYSRFKQRHAFSLNNDFDSDDGSDLTYESYQELVKDYEPCDVFNADEFGLFYKLMPNDMSTIVDKICKDGTMPEERFTVLACSNSIGSEKLPLLIIGNTENSDKDLPCQYQVNPKSWMTKLAFTNWLYILDEYFEIQGRLVVLFVDESPVHPKDIILNNINLVIIPPEAEHEMPMSQGIIKVIKQNYRIKLIEKYKEGLAVDFKQCLKYLTDVFESIKAHTIQSYFKKSGFGDYYEVDDEDDEYKEQILMKYQDYLYVDYELATCEVEKGVNQESTFTDNNIKEKVNKIIINNGETIDNKSVTALQAVTTLKHYLKSLDSENGLNNLSVIESIILSSISKNNSM

Uniprot

H9JEF6   J9LIK9   J9JIZ7   A0A0V1LHS6   A0A0V1C573   A0A1Y3EAG5   + More
A0A2S2Q986   A0A0V1CHI8   A0A2H4EWE8   L7MDS5   A0A023GKV9   A0A147BBA7   L7MCT9   A0A087TT27   L7MME9   L7MKK8   A0A1E1XRR1   A0A2H4EU06   A0A1Q3EU22   A0A131XNC6   A0A1E1X2Z9   A0A2R5L9X9   A0A131XM02   A0A1W4WFJ1   L7MM78   L7MAM5   A0A131Z8V0   A0A1U7RJI3   A0A151PB98   G3MP65   A0A1E1XNV7   A0A1E1XIT7   A0A1E1XTJ5   A0A1E1X418   A0A093HII8   A0A224Z1D2   A0A2S2QVQ0   J9K6L9   A0A1E1X318   F6WAY4   J9K454   A0A2S2PW91   L7MLD5   A0A147BJV1   F6WUM2   A0A224Z9W5   A0A3B3SSQ9   A0A147BDF0   L7MMS1   L7MCM4   A0A1E1X3N4   A0A2R5LGG9   A0A1S3A562   J9KW05   A0A1E1X420   A0A2S2PVR1   A0A2R5L8Q6   I3MYQ0   A0A2S2PEI6   A0A1E1X2Z8   F6SYA9   A0A023GKX0   A0A1B6LVP4   G3WWJ9   D2H8M5   A0A1E1X313   L7MLS7   A0A452FPK3   A0A3Q7NNY9   A0A384C8E4   A0A2Y9HTM8   A0A2U3YD76   A0A2U3W4A0   A0A1U7TKK1   H0WRQ3   A0A3Q7WN60   A0A2K6JVL4   A0A2K6NL06   A0A2K5H7G9   A0A452SIC2   A0A2Y9DPY4   K7EXN0   L7MKX2   M3Z6I0   A0A2Y9FY04   A0A2S2QI15   G3W0T3   A0A1E1X307   A0A2K5L488   W5Q0B7  

Pubmed

19121390    25576852    29652888    29209593    28049606    28503490    + More
26830274    22293439    22216098    28797301    18464734    20431018    29240929    17495919    21709235    20010809    24813606    25362486    17381049    20809919   

EMBL

BABH01003018    ABLF02042388    ABLF02007575    JYDW01000048    KRZ59035.1    JYDI01000635    + More
KRY44322.1    LVZM01022273    OUC40836.1    GGMS01005095    MBY74298.1    JYDI01000198    KRY48745.1    KU056809    AOE48153.1    GACK01003641    JAA61393.1    GBBM01000897    JAC34521.1    GEGO01007356    JAR88048.1    GACK01004010    JAA61024.1    KK116622    KFM68266.1    GACK01000525    JAA64509.1    GACK01000524    JAA64510.1    GFAA01001803    JAU01632.1    KU056810    AOE48154.1    GFDL01016236    JAV18809.1    GEFH01000749    JAP67832.1    GFAC01005543    JAT93645.1    GGLE01002176    MBY06302.1    GEFH01000408    JAP68173.1    GACK01000576    JAA64458.1    GACK01003708    JAA61326.1    GEDV01001661    JAP86896.1    AKHW03000533    KYO46313.1    JO843666    AEO35283.1    GFAA01002466    JAU00969.1    GFAC01000040    JAT99148.1    GFAA01000830    JAU02605.1    GFAC01005196    JAT93992.1    KL206458    KFV82448.1    GFPF01012512    MAA23658.1    GGMS01012636    MBY81839.1    ABLF02022231    GFAC01005545    JAT93643.1    ABLF02032381    ABLF02032385    GGMS01000470    MBY69673.1    GACK01000229    JAA64805.1    GEGO01004400    JAR91004.1    AAMC01120866    GFPF01012384    MAA23530.1    GEGO01006601    JAR88803.1    GACK01000230    JAA64804.1    GACK01004075    JAA60959.1    GFAC01005542    JAT93646.1    GGLE01004497    MBY08623.1    ABLF02020128    ABLF02020129    GFAC01005195    JAT93993.1    GGMS01000424    MBY69627.1    GGLE01001733    MBY05859.1    AGTP01094548    GGMR01015193    MBY27812.1    GFAC01005549    JAT93639.1    GBBM01000959    JAC34459.1    GEBQ01012216    JAT27761.1    AEFK01016728    ACTA01192650    GL192580    EFB21249.1    GFAC01005556    JAT93632.1    GACK01000074    JAA64960.1    LWLT01000018    AAQR03075137    AGCU01009440    GACK01000434    JAA64600.1    AEYP01000962    GGMS01008154    MBY77357.1    AEFK01215205    GFAC01005555    JAT93633.1    AMGL01037157   

Proteomes

UP000005204    UP000007819    UP000054721    UP000054653    UP000243006    UP000054359    + More
UP000192223    UP000189705    UP000050525    UP000053584    UP000002279    UP000008143    UP000261540    UP000079721    UP000005215    UP000002280    UP000007648    UP000008912    UP000291000    UP000286641    UP000261680    UP000291021    UP000248481    UP000245341    UP000245340    UP000189704    UP000005225    UP000286642    UP000233180    UP000233200    UP000233080    UP000291022    UP000248480    UP000007267    UP000000715    UP000248484    UP000233060    UP000002356   

PRIDE

H9JEF6    L7MME9    L7MKK8    L7MM78    L7MCM4   

Pfam

PF03184   DDE_1        + More
PF03221   HTH_Tnp_Tc5
PF04218   CENP-B_N
PF09026   CENP-B_dimeris

Interpro

IPR004875   DDE_SF_endonuclease_dom        + More
IPR033062   CENP-B       
IPR007889   HTH_Psq       
IPR009057   Homeobox-like_sf       
IPR006600   HTH_CenpB_DNA-bd_dom       
IPR015115   CenpB_C       
IPR011991   ArsR-like_HTH       
IPR034882   Dimerisation_CENP-B_sf       
IPR036259   MFS_trans_sf       

SUPFAM

SSF46689   SSF46689        + More
SSF101160   SSF101160       
SSF103473   SSF103473       

Gene 3D

1.10.287.1090    

CDD

cd00090  HTH_ARSR

ProteinModelPortal

H9JEF6   J9LIK9   J9JIZ7   A0A0V1LHS6   A0A0V1C573   A0A1Y3EAG5   + More
A0A2S2Q986   A0A0V1CHI8   A0A2H4EWE8   L7MDS5   A0A023GKV9   A0A147BBA7   L7MCT9   A0A087TT27   L7MME9   L7MKK8   A0A1E1XRR1   A0A2H4EU06   A0A1Q3EU22   A0A131XNC6   A0A1E1X2Z9   A0A2R5L9X9   A0A131XM02   A0A1W4WFJ1   L7MM78   L7MAM5   A0A131Z8V0   A0A1U7RJI3   A0A151PB98   G3MP65   A0A1E1XNV7   A0A1E1XIT7   A0A1E1XTJ5   A0A1E1X418   A0A093HII8   A0A224Z1D2   A0A2S2QVQ0   J9K6L9   A0A1E1X318   F6WAY4   J9K454   A0A2S2PW91   L7MLD5   A0A147BJV1   F6WUM2   A0A224Z9W5   A0A3B3SSQ9   A0A147BDF0   L7MMS1   L7MCM4   A0A1E1X3N4   A0A2R5LGG9   A0A1S3A562   J9KW05   A0A1E1X420   A0A2S2PVR1   A0A2R5L8Q6   I3MYQ0   A0A2S2PEI6   A0A1E1X2Z8   F6SYA9   A0A023GKX0   A0A1B6LVP4   G3WWJ9   D2H8M5   A0A1E1X313   L7MLS7   A0A452FPK3   A0A3Q7NNY9   A0A384C8E4   A0A2Y9HTM8   A0A2U3YD76   A0A2U3W4A0   A0A1U7TKK1   H0WRQ3   A0A3Q7WN60   A0A2K6JVL4   A0A2K6NL06   A0A2K5H7G9   A0A452SIC2   A0A2Y9DPY4   K7EXN0   L7MKX2   M3Z6I0   A0A2Y9FY04   A0A2S2QI15   G3W0T3   A0A1E1X307   A0A2K5L488   W5Q0B7  

PDB

1HLV     E-value=2.33516e-15,     Score=201

KEGG

101739834    no KO assigned | (RefSeq) tigger transposable element-derived protein 4

GO

GO:0003677   GO:0000775   GO:0005634   GO:0003682   GO:0004519   GO:0016604   GO:0000780   GO:0031618   GO:0003696   GO:0003676   GO:0000245   GO:0006397   GO:0043565   GO:0050793   GO:0016876   GO:0043039  

PANTHER

PTHR19303:SF25  

Subcellular location

Nucleus  

Length:

468

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.0390500000000001

Exp number, first 60 AAs:

0.00096

Total prob of N-in:

0.01761

outside

1  -  468

 

 

Pi

149.845727

Theta

152.964625

Tajima's D

0.325579

CLR

13.399977

CSRT

0.463626818659067

Interpretation

Uncertain