Gene

KWMTBOMO08742

Pre Gene Modal

BGIBMGA007676

Annotation

PREDICTED:_U4/U6.U5_tri-snRNP-associated_protein_2_[Amyelois_transitella]

Location

Bomo_Chr15(+):4060528-4064708      View in EpiBrowser

Location in the cell

Nuclear   Reliability : 1.95

CDS

ATGACTGAAGAACAATCTAGAAAACGCAAAATAACTGATGAAAATGGGACTGACAAACAAGGACGATATTCGAAAACTCAACAAATTCAATGTCCTTACCTGGATACTATCAATCGGCATGTTTTAGATTTTGACTTTGAGAAATTGTGCTCGGTTTCATTGACTAGAATCAATGTTTACGCTTGCTTAGTGTGCGGTAAATATTTTCAGGGAAGAGGCACCAACACTCATGCCTACACACATTCAGTGGCTGATGGACACCATGTATTTTTGAATCTTAACACATTAAAGTTCTATTGTCTTCCTGACAATTATGAAGTTATTGACTCTTCATTGAATGACATCAAATATGTTTTGAACCCAACATTCACACCTGAACAGATCAAGCTTATAGATACTAACACAAAGATGTCACGAGCCATTGATGGCACAATGTATATGCCTGGCATTGTAGGCCTTAATAATATCAAGGCCAATGATTACTGTAATGTAATTTTGCAGTGTTTGTCACAAGTACGTCCCCTACGTAACTACTTTTTGAGAGAAGAGAACTATGCTAGTGTAAAAAGACCACCAGGGGACTCGTCTTTTTTACTTGTACAAAGATTTGGTGAATTATTACGCAAACTATGGAACCCCCGTGCTTTTAAAGCACATGTATCTCCTCACGAGATGTTGCAGGCTGTTGTGCTGTGGTCTAAGAAGCGATATCAGTTTATTAAGCAGAGTGATCCAATAGACTTTCTGTCTTGGTTTCTAAATTCATTACACATGGCACTGAATGGTACAAAGAAGCCAAATAGCTCCATAATTTATAAGTCATTTCTGGGTCACATGAGGATCTATACAAGAAAGTTGCCACCGCCGGATGCTGATGATGCAGCTAAAGTCGATCTTAGCAGTGAAGAGTACAATGAAATGATCACTGAGTCTCCATTTTTGTACCTCACATGTGATTTGCCTCCAACGCCATTGTTCACTGATGAGTTCCGCGAAAATATTATTCCACAGGTAAATCTTTACCAGCTGTTGTCAAAATTCAATGGTCAAACATCAAAAGAATACAAGACTTATAAAGAGAACTTTTTGAAAAGATTTGAAATAACACAGCTGCCTCCTTATCTAATTCTTTACATAAAAAGGTTTACGAAAAATACTTTTTTCGTTGAAAAGAATCCTACAGTTGTAAACTTTCCTGTCAAAAACGTCGATTTTGGCGATATACTGACTGCGGAAATTAAGGCGAAACATAACGGAAAAACAATATACGAACTGGTTGGTAACATTGTTCATGATGGAACACCTGAGAAAGGGACATACAGAGCTCACGTGTTGCATAAGCCTACACAGCAGTGGTATGAGATGCAAGATCTTCATGTTACCAGTATTTTACCTCAAATGATTACACTTACTGAAGCATATATACAAATATATGAACTAAAGCAGGACTAA

Protein

MTEEQSRKRKITDENGTDKQGRYSKTQQIQCPYLDTINRHVLDFDFEKLCSVSLTRINVYACLVCGKYFQGRGTNTHAYTHSVADGHHVFLNLNTLKFYCLPDNYEVIDSSLNDIKYVLNPTFTPEQIKLIDTNTKMSRAIDGTMYMPGIVGLNNIKANDYCNVILQCLSQVRPLRNYFLREENYASVKRPPGDSSFLLVQRFGELLRKLWNPRAFKAHVSPHEMLQAVVLWSKKRYQFIKQSDPIDFLSWFLNSLHMALNGTKKPNSSIIYKSFLGHMRIYTRKLPPPDADDAAKVDLSSEEYNEMITESPFLYLTCDLPPTPLFTDEFRENIIPQVNLYQLLSKFNGQTSKEYKTYKENFLKRFEITQLPPYLILYIKRFTKNTFFVEKNPTVVNFPVKNVDFGDILTAEIKAKHNGKTIYELVGNIVHDGTPEKGTYRAHVLHKPTQQWYEMQDLHVTSILPQMITLTEAYIQIYELKQD

Uniprot

H9JDS9   A0A2H1VHW3   A0A2A4K864   A0A2W1BIS2   S4P7I5   A0A437BST3   + More
A0A194PPT9   A0A212F4J7   A0A1E1WA46   D6WET8   A0A151I745   F4WBM0   A0A195BD01   A0A195FSV0   A0A158NRL6   A0A151X5N3   A0A067RII4   A0A1B6ER25   E9J8N0   A0A2J7QQB8   A0A1B6K4Z3   E2A6G5   A0A1Y1LEJ8   E2B4N5   A0A1B6DHZ2   A0A026WQY7   A0A2A3ER45   A0A0L7R947   A0A195DII0   A0A088AFY9   N6UBQ8   E0VSX7   A0A0T6AXA6   A0A154PDK1   A0A232FAM9   A0A0N0U7V5   A0A0A9W861   K7J134   A0A069DU87   A0A232F4U6   A0A0V0G8Y6   A0A2P8YQR4   A0A2S2PZU1   A0A224XPL3   J9JPK8   T1HFN5   W8BZI9   A0A1J1I3J9   A0A1L8E5F3   A0A1B0FDZ7   A0A1A9VRS2   A0A1B0AN93   A0A1A9WSX4   Q17K27   U5ERX4   A0A3B0KE61   A0A182QCP5   A0A182GYZ3   A0A182GIQ4   A0A084WH76   A0A1Q3EWS9   A0A1S4GY37   B3MZV5   A0A182L0K3   A0A182ULV8   A0A182XFY0   A0A182IC66   A0A1W4U9X5   Q7Q4G1   B4PWG5   A0A182TTI1   A0A182PLR3   B3NUP8   A0A182IPX3   A0A182K645   A0A182RDR3   A0A034W1P3   B5DNL3   A0A2M4AT25   A0A182NTZ6   A0A0R3P1D0   A0A182YDU5   A0A0K8TZ59   B0W4M2   A0A182F3F9   A0A182MHL0   A0A1B0GMV9   A0A182W6F9   B4L5I7   A0A0A1WYF5   B4M2Z9   W5JS46   A0A0M4FAC4   A0A1I8P9J7   A0A1I8P9J3   A0A1I8MYQ0   A0A1I8MYP6   B4MTF3   B4I6Y4   Q9VWP1  

Pubmed

19121390    28756777    23622113    26354079    22118469    18362917    + More
19820115    21719571    21347285    24845553    21282665    20798317    28004739    24508170    30249741    23537049    20566863    28648823    25401762    26823975    20075255    26334808    29403074    24495485    17510324    26483478    24438588    12364791    17994087    20966253    17550304    25348373    15632085    25244985    25830018    20920257    23761445    25315136    10731132    12537568    12537572    12537573    12537574    16110336    17569856    17569867    26109357    26109356   

EMBL

BABH01003018    ODYU01002626    SOQ40376.1    NWSH01000070    PCG79983.1    KZ150017    + More
PZC74949.1    GAIX01004589    JAA87971.1    RSAL01000014    RVE53249.1    KQ459596    KPI95461.1    AGBW02010351    OWR48656.1    GDQN01007201    JAT83853.1    KQ971318    EFA00436.1    KQ978430    KYM94009.1    GL888066    EGI68298.1    KQ976511    KYM82438.1    KQ981280    KYN43377.1    ADTU01024048    KQ982498    KYQ55672.1    KK852483    KDR22848.1    GECZ01029375    JAS40394.1    GL769036    EFZ10815.1    NEVH01012087    PNF30785.1    GECU01001198    JAT06509.1    GL437125    EFN70965.1    GEZM01062871    JAV69447.1    GL445584    EFN89316.1    GEDC01030425    GEDC01011992    JAS06873.1    JAS25306.1    KK107124    QOIP01000002    EZA58457.1    RLU25729.1    KZ288197    PBC33732.1    KQ414629    KOC67316.1    KQ980824    KYN12636.1    APGK01041389    KB740993    KB632256    ENN76082.1    ERL90701.1    DS235758    EEB16483.1    LJIG01022604    KRT79681.1    KQ434878    KZC09932.1    NNAY01000595    OXU27498.1    KQ435699    KOX80608.1    GBHO01040931    GBRD01002434    GDHC01012479    JAG02673.1    JAG63387.1    JAQ06150.1    GBGD01001389    JAC87500.1    NNAY01001008    OXU25509.1    GECL01001482    JAP04642.1    PYGN01000427    PSN46585.1    GGMS01001756    MBY70959.1    GFTR01006323    JAW10103.1    ABLF02031725    ACPB03014830    GAMC01001788    JAC04768.1    CVRI01000040    CRK94911.1    GFDF01000210    JAV13874.1    CCAG010011618    JXJN01000753    CH477228    EAT47065.1    GANO01003523    JAB56348.1    OUUW01000011    SPP86590.1    AXCN02000808    JXUM01098515    KQ564426    KXJ72305.1    JXUM01066977    KQ562426    KXJ75939.1    ATLV01023794    KE525346    KFB49570.1    GFDL01015309    JAV19736.1    AAAB01008964    CH902635    EDV33906.1    APCN01000778    EAA12281.4    CM000162    EDX02783.1    CH954180    EDV46645.1    GAKP01010338    JAC48614.1    CH379064    EDY73019.1    GGFK01010625    MBW43946.1    KRT07012.1    GDHF01032570    GDHF01026424    GDHF01017784    GDHF01007512    JAI19744.1    JAI25890.1    JAI34530.1    JAI44802.1    DS231838    EDS33867.1    AXCM01005173    AJVK01004229    CH933811    EDW06446.1    GBXI01010455    JAD03837.1    CH940651    EDW65174.2    ADMH02000622    ETN65574.1    CP012528    ALC49687.1    CH963851    EDW75392.2    CH480823    EDW56082.1    AE014298    AY061442    AAF48897.2    AAL28990.1   

Proteomes

UP000005204    UP000218220    UP000283053    UP000053268    UP000007151    UP000007266    + More
UP000078542    UP000007755    UP000078540    UP000078541    UP000005205    UP000075809    UP000027135    UP000235965    UP000000311    UP000008237    UP000053097    UP000279307    UP000242457    UP000053825    UP000078492    UP000005203    UP000019118    UP000030742    UP000009046    UP000076502    UP000215335    UP000053105    UP000002358    UP000245037    UP000007819    UP000015103    UP000183832    UP000092444    UP000078200    UP000092460    UP000091820    UP000008820    UP000268350    UP000075886    UP000069940    UP000249989    UP000030765    UP000007801    UP000075882    UP000075903    UP000076407    UP000075840    UP000192221    UP000007062    UP000002282    UP000075902    UP000075885    UP000008711    UP000075880    UP000075881    UP000075900    UP000001819    UP000075884    UP000076408    UP000002320    UP000069272    UP000075883    UP000092462    UP000075920    UP000009192    UP000008792    UP000000673    UP000092553    UP000095300    UP000095301    UP000007798    UP000001292    UP000000803   

PRIDE

H9JDS9    Q9VWP1   

Pfam

PF02148   zf-UBP        + More
PF00443   UCH

Interpro

IPR013083   Znf_RING/FYVE/PHD        + More
IPR033809   USP39       
IPR028889   USP_dom       
IPR038765   Papain-like_cys_pep_sf       
IPR001607   Znf_UBP       
IPR001394   Peptidase_C19_UCH       

SUPFAM

SSF54001   SSF54001       

Gene 3D

3.30.40.10    

CDD

cd02669  Peptidase_C19M

ProteinModelPortal

H9JDS9   A0A2H1VHW3   A0A2A4K864   A0A2W1BIS2   S4P7I5   A0A437BST3   + More
A0A194PPT9   A0A212F4J7   A0A1E1WA46   D6WET8   A0A151I745   F4WBM0   A0A195BD01   A0A195FSV0   A0A158NRL6   A0A151X5N3   A0A067RII4   A0A1B6ER25   E9J8N0   A0A2J7QQB8   A0A1B6K4Z3   E2A6G5   A0A1Y1LEJ8   E2B4N5   A0A1B6DHZ2   A0A026WQY7   A0A2A3ER45   A0A0L7R947   A0A195DII0   A0A088AFY9   N6UBQ8   E0VSX7   A0A0T6AXA6   A0A154PDK1   A0A232FAM9   A0A0N0U7V5   A0A0A9W861   K7J134   A0A069DU87   A0A232F4U6   A0A0V0G8Y6   A0A2P8YQR4   A0A2S2PZU1   A0A224XPL3   J9JPK8   T1HFN5   W8BZI9   A0A1J1I3J9   A0A1L8E5F3   A0A1B0FDZ7   A0A1A9VRS2   A0A1B0AN93   A0A1A9WSX4   Q17K27   U5ERX4   A0A3B0KE61   A0A182QCP5   A0A182GYZ3   A0A182GIQ4   A0A084WH76   A0A1Q3EWS9   A0A1S4GY37   B3MZV5   A0A182L0K3   A0A182ULV8   A0A182XFY0   A0A182IC66   A0A1W4U9X5   Q7Q4G1   B4PWG5   A0A182TTI1   A0A182PLR3   B3NUP8   A0A182IPX3   A0A182K645   A0A182RDR3   A0A034W1P3   B5DNL3   A0A2M4AT25   A0A182NTZ6   A0A0R3P1D0   A0A182YDU5   A0A0K8TZ59   B0W4M2   A0A182F3F9   A0A182MHL0   A0A1B0GMV9   A0A182W6F9   B4L5I7   A0A0A1WYF5   B4M2Z9   W5JS46   A0A0M4FAC4   A0A1I8P9J7   A0A1I8P9J3   A0A1I8MYQ0   A0A1I8MYP6   B4MTF3   B4I6Y4   Q9VWP1  

PDB

6AH0     E-value=4.6369e-180,     Score=1622

KEGG

101740684    K12847 U4/U6.U5 tri-snRNP-associated protein 2 | (RefSeq) U4/U6.U5 tri-snRNP-associated protein 2

PATHWAY

03040    Spliceosome - Bombyx mori (domestic silkworm)

GO

GO:0000245   GO:0036459   GO:0016579   GO:0008270   GO:0004843   GO:0071011   GO:0000398   GO:0006397   GO:0005634   GO:0043565   GO:0050793   GO:0003676   GO:0016876   GO:0043039  

PANTHER

PTHR21646:SF16  

Length:

483

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.0511300000000001

Exp number, first 60 AAs:

0.01191

Total prob of N-in:

0.03148

outside

1  -  483

 

 

Pi

269.22487

Theta

189.772471

Tajima's D

1.316825

CLR

0.015041

CSRT

0.743662816859157

Interpretation

Uncertain