Gene

KWMTBOMO08738

Pre Gene Modal

BGIBMGA007907

Annotation

PREDICTED:_LOW_QUALITY_PROTEIN:_SET_and_MYND_domain-containing_protein_4_[Bombyx_mori]

Location

Bomo_Chr15(-):3851373-3857077      View in EpiBrowser

Location in the cell

Nuclear   Reliability : 2.272

CDS

ATGACCGAAGAAAACGAAGGTTTCTTTAAGAAGTTTCACGAATCGATCAACAACGAATTAGACGAAGTCACAAAAAACAATTTCGCCAATTTAGAATCGAACTCTAAGCGCGTTTCGTATCTGTGCAGTCTCCCGATTATAAAAAAGTACGATATCACCGATGATGTTGTGAAATGTAAAACGGGTGGCGAGTTTCCTGTAAACAAATCTTTAAGCAAAGCTCTACAATTAAAGGACGCGGGAAACCAATGGGTCCAAAAGGGTGATTGGGTGAAGGCTTTGGTATTTTACAGTCAAAGTATGATGCATATGCCAGAAAAGGAAACGGAAGAGTTGTCAATTGTTTTCGCCAATCGATCGGCAGCTCTGAACCATTTGCAGCAATACGAGGAAGCCCTAGCCGATATAAAGAAATGTTTGTCCCTCGGATATCCTCGGCATCTCAGATACAAAGTTTACGAAAGAAAAGCACGTAGTTTGTTGGCGCTGAAAAGGAACCGGGAATCAATTGTTGCATTCCAAGACACTATAAGTGCTTTAGATGAGGCAACAAAACTTGAAAAGGAGAAAAGAACCAAAATGCGGACAGATGCTAAGATAATGTTGGAAATTTTGAACAAGGGACTAGTTCTCGCTGGGAATCCAAGCGATCCAGAACCTTTAAATAAGATTCCTCCAAAACCGAAATTAGCAGGAAAGCATAACTCCAAGTTCCCGGCGGCTTCTGAAGCGATAACAATAGATACTGACGACGTTAAAGGAAGATACGCTACTGCAACAAGGGATATCAGTGCTGGAGAAGTTTTGCTTATTGAGAAAGCGCACAGTGGAGTTCTTTTGGCTGAATTCTCGAAGACACATTGTCAAAATTGCTTCCTTAAGTGTCCTATATCACTACCGTGTCCCAAGTGTCCGAACGTAATATTCTGCAGCGACAAATGCCTAGAAACCGCTTTAAAATCATATCACGGTTACGAATGTCAAATACTTCCATTGATATGGAAATCTGGATGTTCTATCACATGCCAAATCGCTTTGAGAATGATCACGCAAAACAAAAAGGATTACTTTTTGAGCATCAGCAATGATTTGAAGCCCCAGTTGGGTGCATACAAGACGGAAGACTACAGAAACATTTACAATTTAACAACTCATGAAGAAAAAAGATGCAAGCAAGACTTTTTGCACAGAACAGAGATGGTAGTATTCCTGATTAAGGTCTTAGAATTGACCGGTTATTTTGACGGAAAACCAAGAACGAAGCCGATAGAAATGGTGGAACTGAATTCAATGGCGGTTAACGAAAAATACCAGGGTGACGTAGAATTGATAGGTGGCTACTTGTTGAGGAATCTTCAGGTTCTACAATTCAATGCGCACGAAGTGTTTGAACTTCAAGTACCTAAGCCGAAAGTTGATAAGAATATTATAAAACATGACGGAAAATCAGTGTTTTTAGCCGGAGCCGTTTTCCCGACACTCGCCCTATTCAATCACTCCTGTGAACCAGGCGTTGTAAGATATTTCTATGGCTCACACATCGTAGTTCGTGCCGTCAAAAATATCAAAAAAGGTGAGGAAGTCTGCGAAAACTACGGTCCAATATTCACGACCGTGCCCAAGGAGAAGAGACAAATGGAACTCAAAGACCGGTACTGGTTTGACTGTGAATGCATACCGTGCAAGGAAAACTGGCCTTTGTACGATGAGATGACCGAGAATTACATGAGATTCAAGTGCGATTCCGACAATCCTTGCCCGAACGTGGTGGCTGTTCCGTACGACTGCACCGAATTCATGATCCAGTGTGGTTTATGCCAGCAGTACACCAACATACTGAAGGGACTAAAATCGCTCCAGAACCAGAAATCGAAAATCTTACTAAAATTAGCACCAGTTCAAAGTTTGTCCGGTATAATATATGGAAATGGTGTCTTCTCGAAAATTACAAAGCAAACAACTCTATACAAAGAACAAAACTTTTAA

Protein

MTEENEGFFKKFHESINNELDEVTKNNFANLESNSKRVSYLCSLPIIKKYDITDDVVKCKTGGEFPVNKSLSKALQLKDAGNQWVQKGDWVKALVFYSQSMMHMPEKETEELSIVFANRSAALNHLQQYEEALADIKKCLSLGYPRHLRYKVYERKARSLLALKRNRESIVAFQDTISALDEATKLEKEKRTKMRTDAKIMLEILNKGLVLAGNPSDPEPLNKIPPKPKLAGKHNSKFPAASEAITIDTDDVKGRYATATRDISAGEVLLIEKAHSGVLLAEFSKTHCQNCFLKCPISLPCPKCPNVIFCSDKCLETALKSYHGYECQILPLIWKSGCSITCQIALRMITQNKKDYFLSISNDLKPQLGAYKTEDYRNIYNLTTHEEKRCKQDFLHRTEMVVFLIKVLELTGYFDGKPRTKPIEMVELNSMAVNEKYQGDVELIGGYLLRNLQVLQFNAHEVFELQVPKPKVDKNIIKHDGKSVFLAGAVFPTLALFNHSCEPGVVRYFYGSHIVVRAVKNIKKGEEVCENYGPIFTTVPKEKRQMELKDRYWFDCECIPCKENWPLYDEMTENYMRFKCDSDNPCPNVVAVPYDCTEFMIQCGLCQQYTNILKGLKSLQNQKSKILLKLAPVQSLSGIIYGNGVFSKITKQTTLYKEQNF

Uniprot

H9JEG0   A0A2H1V057   A0A2A4JB22   A0A3S2LT25   A0A194QM83   A0A194PPT4   + More
A0A212ERL4   A0A0L7KXA3   A0A2W1B565   A0A1B6F3Y7   A0A146LER3   A0A0K8T434   A0A0A9YT27   A0A1B6J8P5   A0A023F0G4   A0A1B6CWC9   T1I1H4   A0A2J7RM43   A0A1B0CSA0   Q0IG30   A0A067RIA7   B0X7W3   E0VHL0   A0A0A1XQ85   A0A034VBD7   A0A1S4F4X7   W8BM99   A0A0K8VG01   A0A182QSN0   A0A182Y978   A0A182H4D0   W5JSF9   A0A182TQX6   Q7PWV2   A0A182UST0   A0A1W4UGC5   A0A2C9GRY7   A0A3B0JEX9   A0A182VU51   A0A182T3J0   A0A182LXV7   B3MFB7   A0A087ZR37   A0A182JZN0   A0A1A9YPG3   A0A084VYF9   A0A1B0BI81   B3NSG0   A0A195CR60   A0A0J9TZ25   B4J8Z5   A1Z8L3   A0A1B0G1K5   B4HNH7   A0A3L8E364   A0A0R1DWA2   A0A1I8NI76   A0A182R4A7   A0A1I8QEF5   A0A1B0A9A5   B4LQ48   A0A310SJH7   A0A026WG26   B4P647   Q28YA2   A0A1A9UIY6   A0A182KNG7   A0A0J7L0U2   A0A2A3E941   A0A182XDH9   E9IAB4   B4GCW8   A0A154PFP6   A0A0L0CN66   A0A151XIR9   A0A0N0U786   A0A182NUN6   A0A182JHR4   B4KR24   A0A1B6HSN7   J9JK42   A0A0M3QUU8   B4MQJ4   A0A224XAZ1   A0A195E0C5   E2B789   A0A158NES4   A0A195AVV3   Q95RZ8   B4QBL1   A0A0Q9WCE6   A0A195FKV7   E2A170   A0A0Q9XMD3   A0A0P4W687   K7JCG6   F4WEE6   A0A182F1Y5   A0A1B6L459   A0A0P4W8Y7  

Pubmed

19121390    26354079    22118469    26227816    28756777    26823975    + More
25401762    25474469    17510324    24845553    20566863    25830018    25348373    24495485    25244985    26483478    20920257    23761445    12364791    14747013    17210077    17994087    24438588    22936249    10731132    12537568    12537572    12537573    12537574    16110336    17569856    17569867    30249741    17550304    25315136    24508170    15632085    20966253    21282665    26108605    20798317    21347285    20075255    21719571   

EMBL

BABH01003039    ODYU01000077    SOQ34225.1    NWSH01002176    PCG68966.1    RSAL01000014    + More
RVE53246.1    KQ461195    KPJ06648.1    KQ459596    KPI95456.1    AGBW02013012    OWR44094.1    JTDY01004862    KOB67664.1    KZ150318    PZC71432.1    GECZ01024885    JAS44884.1    GDHC01012550    JAQ06079.1    GBRD01005670    JAG60151.1    GBHO01008823    JAG34781.1    GECU01012149    JAS95557.1    GBBI01003755    JAC14957.1    GEDC01019561    JAS17737.1    ACPB03005171    NEVH01002577    PNF41905.1    AJWK01025809    CH477274    EAT45183.1    KK852460    KDR23527.1    DS232465    EDS42182.1    DS235171    EEB12896.1    GBXI01001257    JAD13035.1    GAKP01020096    GAKP01020094    JAC38858.1    GAMC01006634    GAMC01006633    JAB99922.1    GDHF01014460    JAI37854.1    AXCN02000734    JXUM01001256    JXUM01001257    JXUM01001258    JXUM01001259    ADMH02000599    ETN65694.1    AAAB01008984    EAA14823.4    APCN01003350    OUUW01000001    SPP73850.1    AXCM01000044    CH902619    EDV35591.1    ATLV01018364    KE525231    KFB43003.1    JXJN01014861    CH954179    EDV56462.1    KQ977381    KYN03191.1    CM002911    KMY93000.1    CH916367    EDW01344.1    AE013599    AAF58645.2    CCAG010020139    CH480816    EDW47413.1    QOIP01000001    RLU27144.1    CM000158    KRJ99520.1    CH940648    EDW61333.1    KQ759804    OAD62811.1    KK107260    EZA53989.1    EDW90922.2    CM000071    EAL26063.1    LBMM01001562    KMQ96084.1    KZ288344    PBC27709.1    GL761997    EFZ22489.1    CH479181    EDW32531.1    KQ434893    KZC10665.1    JRES01000160    KNC33731.1    KQ982080    KYQ60227.1    KQ435709    KOX79971.1    CH933808    EDW10380.1    GECU01030008    JAS77698.1    ABLF02026503    CP012524    ALC41289.1    CH963849    EDW74383.1    GFTR01006860    JAW09566.1    KQ979999    KYN18329.1    GL446149    EFN88450.1    ADTU01013628    KQ976736    KYM76099.1    AY061023    AAL28571.1    CM000362    EDX06628.1    KRF79927.1    KQ981490    KYN41300.1    GL435707    EFN72837.1    KRG05208.1    GDRN01080085    JAI62291.1    AAZX01003663    GL888103    EGI67433.1    GEBQ01021455    JAT18522.1    GDRN01080086    GDRN01080084    GDRN01080083    JAI62293.1   

Proteomes

UP000005204    UP000218220    UP000283053    UP000053240    UP000053268    UP000007151    + More
UP000037510    UP000015103    UP000235965    UP000092461    UP000008820    UP000027135    UP000002320    UP000009046    UP000075886    UP000076408    UP000069940    UP000000673    UP000075902    UP000007062    UP000075903    UP000192221    UP000075840    UP000268350    UP000075920    UP000075901    UP000075883    UP000007801    UP000005203    UP000075881    UP000092443    UP000030765    UP000092460    UP000008711    UP000078542    UP000001070    UP000000803    UP000092444    UP000001292    UP000279307    UP000002282    UP000095301    UP000075900    UP000095300    UP000092445    UP000008792    UP000053097    UP000001819    UP000078200    UP000075882    UP000036403    UP000242457    UP000076407    UP000008744    UP000076502    UP000037069    UP000075809    UP000053105    UP000075884    UP000075880    UP000009192    UP000007819    UP000092553    UP000007798    UP000078492    UP000008237    UP000005205    UP000078540    UP000000304    UP000078541    UP000000311    UP000002358    UP000007755    UP000069272   

PRIDE

H9JEG0    A1Z8L3    Q95RZ8   

Pfam

PF00856   SET        + More
PF01753   zf-MYND
PF00230   MIP
PF13181   TPR_8

Interpro

IPR001214   SET_dom        + More
IPR011990   TPR-like_helical_dom_sf       
IPR013026   TPR-contain_dom       
IPR019734   TPR_repeat       
IPR002893   Znf_MYND       
IPR023271   Aquaporin-like       
IPR000425   MIP       
IPR013087   Znf_C2H2_type       

SUPFAM

SSF48452   SSF48452        + More
SSF81338   SSF81338       

Gene 3D

1.25.40.10     1.20.1080.10    

ProteinModelPortal

H9JEG0   A0A2H1V057   A0A2A4JB22   A0A3S2LT25   A0A194QM83   A0A194PPT4   + More
A0A212ERL4   A0A0L7KXA3   A0A2W1B565   A0A1B6F3Y7   A0A146LER3   A0A0K8T434   A0A0A9YT27   A0A1B6J8P5   A0A023F0G4   A0A1B6CWC9   T1I1H4   A0A2J7RM43   A0A1B0CSA0   Q0IG30   A0A067RIA7   B0X7W3   E0VHL0   A0A0A1XQ85   A0A034VBD7   A0A1S4F4X7   W8BM99   A0A0K8VG01   A0A182QSN0   A0A182Y978   A0A182H4D0   W5JSF9   A0A182TQX6   Q7PWV2   A0A182UST0   A0A1W4UGC5   A0A2C9GRY7   A0A3B0JEX9   A0A182VU51   A0A182T3J0   A0A182LXV7   B3MFB7   A0A087ZR37   A0A182JZN0   A0A1A9YPG3   A0A084VYF9   A0A1B0BI81   B3NSG0   A0A195CR60   A0A0J9TZ25   B4J8Z5   A1Z8L3   A0A1B0G1K5   B4HNH7   A0A3L8E364   A0A0R1DWA2   A0A1I8NI76   A0A182R4A7   A0A1I8QEF5   A0A1B0A9A5   B4LQ48   A0A310SJH7   A0A026WG26   B4P647   Q28YA2   A0A1A9UIY6   A0A182KNG7   A0A0J7L0U2   A0A2A3E941   A0A182XDH9   E9IAB4   B4GCW8   A0A154PFP6   A0A0L0CN66   A0A151XIR9   A0A0N0U786   A0A182NUN6   A0A182JHR4   B4KR24   A0A1B6HSN7   J9JK42   A0A0M3QUU8   B4MQJ4   A0A224XAZ1   A0A195E0C5   E2B789   A0A158NES4   A0A195AVV3   Q95RZ8   B4QBL1   A0A0Q9WCE6   A0A195FKV7   E2A170   A0A0Q9XMD3   A0A0P4W687   K7JCG6   F4WEE6   A0A182F1Y5   A0A1B6L459   A0A0P4W8Y7  

PDB

3QWW     E-value=2.66314e-12,     Score=176

KEGG

101740237    no KO assigned | (RefSeq) SET and MYND domain-containing protein 4

GO

GO:0008168   GO:0015267   GO:0016021   GO:0042051   GO:0005737   GO:0042826   GO:0010629   GO:0003676   GO:0005515   GO:0007264   GO:0008270   GO:0003700   GO:0005634   GO:0043565   GO:0050793   GO:0016876   GO:0043039  

Length:

661

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.45549

Exp number, first 60 AAs:

0

Total prob of N-in:

0.00029

outside

1  -  661

 

 

Pi

349.368956

Theta

213.748268

Tajima's D

1.561969

CLR

0.335456

CSRT

0.80265986700665

Interpretation

Uncertain