Gene

KWMTBOMO08734

Pre Gene Modal

BGIBMGA007909

Annotation

PREDICTED:_rab_GTPase-activating_protein_1-like_isoform_X2_[Bombyx_mori]

Location

Bomo_Chr15(-):3790226-3830107      View in EpiBrowser

Location in the cell

Nuclear   Reliability : 2.934

CDS

ATGGAGTTCAATGAATATCAGACAAGACAAGTCTCGCATTCAGTAGATGTTTATTCTACCGTTCGTTCACGGTCGCAAAGTTCCTCACCTGTGCTTTGTACGAATGTGTCTTGCGATTTGGAGGACATTTTGAGCGACGCCATCGCAGAAACATTACAAAGTTCTCTCCGTGTAAGTCACGGTCAGTTAGTGAGCCAGGAACTTTCTATTCGACCAGAAGCCAATATTGAAGCCAACGTTCCAGAAGATCTTGATTTATTTCAAGAAATATTTGAAGTTGATAGTGAGTCTGAACCAAGAATGGGAGATTCTAATGGAGCTCCAGTGCAGAACAATGTATTGAAAGAGCAGGATTCGTGTCGTCTGGTCGGTGGCTCAAAGTTCTATGAAATGGTCGATGGCTCGCCATCTGCCGATACGTCCACACCGTCACCAACAGAGAAGCATGATCATATGAAGCCGATAGAGAGCGACGATGAAGAATGCACAGTGTTCAGCGGCGTCAGTTACCTGGGAGCCCAGAACATTTCGGATCCGAAGTGCGAAAGCGACATCCAGCGGATTATGAAGGAACTAAGTTCGATGCCTGAGAGCAGGGACGGGATCGCAGTGTCGATATCGATACCTGTGTGTTCGCAGGGATTGGTTGTGCTGTACCAGGCGGATTCTAATAGCGTGATGGCGCGCTACGCCGTCAATCGCATTTCGTTCTACGCTCGCGGCGCGGTCGGTTCGCCGGTCGCTTCGTGCTTCGCGTTCACCTGGTCCCACGGCGAGACCAAGGAATCCGCAGTGTACAGGTGCCACGTGTTCCGCTGTCACATCGCTGAAGCTGTCACACAAGTGTCAAGTTGCTTCGCCAAGGCTTTCGAGCGCGTTCCTAGATCTATGACGTCATCAATAGCTGGTGAGCTGAGCGCGGCGCCCTCTATGACCGGTTCGCTTATTGAAGGTCTCGGACCCGCCGCTCCACCGATGCAGCTCATGCACGTATTGGAATGCACCGTTGATATCAAGGAAGCGGATGCTAAGGGAACTTTTAGCCATGTTCCGAAGGAGCGTCTCGGTTTCAAGCTGCGTGGTGGCATCGACAAGCAAGTGACCATCAATGTCCAACAGGTCACTAATAATGTTCAGACTGAAGTAGACGAGGCACAGAGTGGCTACACCGGCGGCTTGTACATCGAAAGATGCTTTGGGATACTCCTGGCTCCGGGGCGCAGCGTTAAACATTCAGACATGAGACTGCTAGAAATGGTGAGCGGTTCATCGGGAGGTTCGGGTTGTTCGGTGTGCGCGCTGTGGAACGCGGGGGAGTCCGCACTCGCGGCCTTCAACGTCGCCAGCGGGGACGGGGCTCCGGCGTACATGTCTCTGGCGCTCGACCTCGTCATACGGGGCATCCCTGACCCCCTCAGGTTGATCATAGAAACTCCGGTGAAAGTGTTTCCGCCAACAGAAAGGTTTTGGTATTATTCGAAAAGACCTCTCGTTCAACAGTTTTACATTAATCTTAAAGAGTCCGTGGATCCTCTGGGTCAGCTCCAGTACGAGGTGGCGAGCGTGGAGACCGAGGGGGAGCTGGACAAGTCCCGTTTGAACTTGCCGCTGTCGCTGTCCAGCCTGCTGCCGTCGCCGCTGTCCAGCGTGCCCGCCCCGCCCTCGCCCTCCGAACCGGACTCTGATGGCGATGAGCCGCTTCTGAGTGGAACTGGAGAAGTTTCTAAAGATTGCGGCGAAGATGTGCTCGTAAACTGGGCCCAGGTGCTAAGAAGTTGGACTGGCCCGAGACCCAGAGCATTGAACCACTTGGTGCGGGTCGGTGTGCCCGAAGCCCTCCGCGGGGAGGTGTGGCTCCGGCTGGCCGGCGTCGACCAGAACGATAAACTAATGGAGACCTACAGAACGTTAATTAGTAAGGAGTGTCCGTTCGAGGCGGTAATCCAGCGCGACATCGCGCGCACATTCCCGGCGCACGACTTCTTCCGCGAGGCGGGCGGGCTCGGGCAGGACTCGCTGCTGCGGATGGCGCGCGCCTACGCCGTGTACGACCACGAGGTCGGCTACTGCCAAGGACTCAGCTTCCTGGCCGCCACGCTGCTGCTGCACATGCCTGAAGAGCAAGCTTTCTGCCTTCTTGTCCGGCTAATGTATGGCTATGGACTAAGAGAGCTATACAAGGACGGATTTGAAGCTCTCTATATGAGACTGCATCAACTAGATAGGCTGATCGAGGAACAATTGACGGACTTACGTGCGCATTTCCAAGAACTAGGTGTCGAGCCGCACATGTTTGCATCGCAATGGTTCCTAACGGTGTTCACTGCACGCTTCCCTCTACCATTGGTGTACCACATTCTAGACGTGTTTCTGCTGCAAGGTATCGACACGTTATTCCAAGTTGCACTGGCGTTGCTCTCTAGGTCACGGAAGGACTTACTGACACACGATTTCGAAGGTGTCCTGAAATATTTCAGAGTAACGCTGCCTAAGAAATGTCGCGCTGAGGAGACATCGAGACAGATCATCAAACTTGCGTGCAGCATCAAAGTGAAACGACTCAACAAATACCAGTTGGAATATGAGAAGTTTATCAAAGAATCTGCTGAAAAAGAGAAAATAAATGTAGAAATGGAACGATTGAAAGTAATCAACAATCAACTGCAACTAGAGAAAGAAACGCTCGAAACCCAATTGAACGAGGCCCGCGCTAATTACGAAGAAGCCGAGAAGGCGACGGCGCACTACGCGTCCGTTGCCAGGGACTACAGAGAGATCTGCGCCAGGCTCGACAGGCAGCTGCACGTCCTGCAGGACACCGTAAAAGATTGTGTAACTTGCAGCATGAAATTGACACCGAAGGATAATAAAGAAGCAGAAAAAGGCGACGGCAATCTCGAAGGCACAACGGATACTGAGACTAGATTAAGACAAAAAATATGCGACTTGGAACTCGAACTAGCTCAAGTGAAACTGGCGCACGTACAGGCGCAGTGCAGTAATCAGGAACTCAGTCACCAGCTTAGTGCAGCTCTGAACGAGGTGCAAGCCGCGATGAACAACCAAAAGCAAACCGTCGCACCTTGGCTAGTTCGAACACTTGGCTCCATAATGGACGCGGCACAGAATAAATCAACATTCCAGACGTACATACCGAATTTTAATCAAGAATCTTCAACGCCCATTCATCGACAAGGCTCGTTTTCTAGTCAAAGCCACAATCCAGTGAACCTCGACAGACGAGTCTCTGAGCCGTACAGTCCCGATGTTGTCCGAAGGAAGAAGGACCTCAACGCCAAGAGACATTCGATGCTCGTCGAGTCGAACATGACCAAAGAGGCCAAAGAAATGAATCGGCGAAGTCATGACGTCACGATAGTGAAGAACATCTCGATGGGTTGA

Protein

MEFNEYQTRQVSHSVDVYSTVRSRSQSSSPVLCTNVSCDLEDILSDAIAETLQSSLRVSHGQLVSQELSIRPEANIEANVPEDLDLFQEIFEVDSESEPRMGDSNGAPVQNNVLKEQDSCRLVGGSKFYEMVDGSPSADTSTPSPTEKHDHMKPIESDDEECTVFSGVSYLGAQNISDPKCESDIQRIMKELSSMPESRDGIAVSISIPVCSQGLVVLYQADSNSVMARYAVNRISFYARGAVGSPVASCFAFTWSHGETKESAVYRCHVFRCHIAEAVTQVSSCFAKAFERVPRSMTSSIAGELSAAPSMTGSLIEGLGPAAPPMQLMHVLECTVDIKEADAKGTFSHVPKERLGFKLRGGIDKQVTINVQQVTNNVQTEVDEAQSGYTGGLYIERCFGILLAPGRSVKHSDMRLLEMVSGSSGGSGCSVCALWNAGESALAAFNVASGDGAPAYMSLALDLVIRGIPDPLRLIIETPVKVFPPTERFWYYSKRPLVQQFYINLKESVDPLGQLQYEVASVETEGELDKSRLNLPLSLSSLLPSPLSSVPAPPSPSEPDSDGDEPLLSGTGEVSKDCGEDVLVNWAQVLRSWTGPRPRALNHLVRVGVPEALRGEVWLRLAGVDQNDKLMETYRTLISKECPFEAVIQRDIARTFPAHDFFREAGGLGQDSLLRMARAYAVYDHEVGYCQGLSFLAATLLLHMPEEQAFCLLVRLMYGYGLRELYKDGFEALYMRLHQLDRLIEEQLTDLRAHFQELGVEPHMFASQWFLTVFTARFPLPLVYHILDVFLLQGIDTLFQVALALLSRSRKDLLTHDFEGVLKYFRVTLPKKCRAEETSRQIIKLACSIKVKRLNKYQLEYEKFIKESAEKEKINVEMERLKVINNQLQLEKETLETQLNEARANYEEAEKATAHYASVARDYREICARLDRQLHVLQDTVKDCVTCSMKLTPKDNKEAEKGDGNLEGTTDTETRLRQKICDLELELAQVKLAHVQAQCSNQELSHQLSAALNEVQAAMNNQKQTVAPWLVRTLGSIMDAAQNKSTFQTYIPNFNQESSTPIHRQGSFSSQSHNPVNLDRRVSEPYSPDVVRRKKDLNAKRHSMLVESNMTKEAKEMNRRSHDVTIVKNISMG

Uniprot

A0A3S2P5Z9   A0A212ERJ1   A0A194QNU4   A0A194PR68   H9JEG2   A0A2A4JAU4   + More
A0A2W1BDP8   A0A2J7Q0H9   A0A2J7Q0I6   D6X3W7   A0A067RJX1   A0A1Y1JTN6   A0A154PJM8   A0A1Y1JTN7   A0A224XAP6   A0A069DWY1   A0A026WMF8   A0A023F259   A0A195BEC7   A0A195DI05   A0A195EQV6   A0A088ACG3   A0A1B6CKT3   A0A1B6D067   E1ZXC8   E2B8J0   K7IRD5   T1HQL1   A0A232F0X2   A0A146M2Z8   A0A0A9XPR8   A0A0A9XT17   A0A146M341   E0VTD1   A0A1B6HUV9   A0A158NQS4   A0A0A9XQR2   A0A146LJE7   A0A0A9XML6   A0A0K8SRU6   A0A1B6FZ96   A0A1L8DVR7   A0A0K8TSK8   A0A0K8U1S3   A0A034VF56   J9JYT1   A0A0K8UB34   A0A2S2QE07   A0A0A1XRV4   A0A1B0AYA2   B4KYD0   A0A1A9XWI9   A0A0Q9XNJ0   A0A0A1WP96   A0A0P8ZU93   B3M5J8   T1PE13   Q8MT33   Q9VSI2   A0A1W4US74   A0A084WS41   A0A1A9WR95   A0A1Q3F2H4   A0A1A9Z3C5   Q17ND9   Q17ND8   A0A1A9VYM3   A0A182RU23   B0W6W9   F4WBX7   A0A0L8GQZ5   A0A0L8GR89   A0A0L8GRE5   A0A0L8GS12   A0A0L8GQY9   A0A0L8GS16   A0A2L2YA69   A0A1D2NJA9   A0A3Q1LIH2   A0A1L8F6C7   A0A3Q7QQ65   A0A3Q7TUY1  

Pubmed

22118469    26354079    19121390    28756777    18362917    19820115    + More
24845553    28004739    26334808    24508170    25474469    20798317    20075255    28648823    26823975    25401762    20566863    21347285    26369729    25348373    25830018    17994087    10731132    12537568    12537572    12537573    12537574    16110336    17569856    17569867    24438588    17510324    21719571    26561354    27289101    19393038    27762356   

EMBL

RSAL01000014    RVE53242.1    AGBW02013012    OWR44097.1    KQ461195    KPJ06645.1    + More
KQ459596    KPI95453.1    BABH01003045    BABH01003046    BABH01003047    BABH01003048    NWSH01002328    PCG68513.1    KZ150318    PZC71437.1    NEVH01019967    PNF22092.1    PNF22091.1    KQ971379    EEZ97478.2    KK852463    KDR23318.1    GEZM01103174    JAV51488.1    KQ434923    KZC11488.1    GEZM01103178    JAV51481.1    GFTR01008422    JAW08004.1    GBGD01000306    JAC88583.1    KK107154    EZA56851.1    GBBI01003045    JAC15667.1    KQ976511    KYM82564.1    KQ980824    KYN12528.1    KQ982021    KYN30593.1    GEDC01029621    GEDC01023258    GEDC01023060    GEDC01016398    JAS07677.1    JAS14040.1    JAS14238.1    JAS20900.1    GEDC01018189    GEDC01014524    JAS19109.1    JAS22774.1    GL435030    EFN74218.1    GL446337    EFN87976.1    ACPB03008564    NNAY01001402    OXU24097.1    GDHC01004478    JAQ14151.1    GBHO01021635    JAG21969.1    GBHO01021636    GDHC01013778    JAG21968.1    JAQ04851.1    GDHC01004446    JAQ14183.1    DS235762    EEB16637.1    GECU01029233    GECU01010714    JAS78473.1    JAS96992.1    ADTU01023428    ADTU01023429    ADTU01023430    GBHO01021633    JAG21971.1    GDHC01012069    JAQ06560.1    GBHO01021637    JAG21967.1    GBRD01009801    JAG56023.1    GECZ01014254    JAS55515.1    GFDF01003564    JAV10520.1    GDAI01000673    JAI16930.1    GDHF01032059    GDHF01013576    GDHF01009422    JAI20255.1    JAI38738.1    JAI42892.1    GAKP01018251    GAKP01018250    GAKP01018249    JAC40702.1    ABLF02035135    GDHF01028465    JAI23849.1    GGMS01006718    MBY75921.1    GBXI01003119    GBXI01000657    JAD11173.1    JAD13635.1    JXJN01005582    CH933809    EDW17709.1    KRG05704.1    GBXI01013610    JAD00682.1    CH902618    KPU78106.1    EDV39608.1    KA646997    AFP61626.1    AY118408    AAM48437.1    AE014296    AAF50437.2    ATLV01026323    KE525409    KFB53035.1    GFDL01013289    JAV21756.1    CH477200    EAT48196.1    EAT48197.1    DS231850    EDS37115.1    GL888066    EGI68405.1    KQ420776    KOF79408.1    KOF79407.1    KOF79409.1    KOF79405.1    KOF79403.1    KOF79410.1    IAAA01011057    IAAA01011058    LAA04250.1    LJIJ01000024    ODN05350.1    CM004480    OCT67136.1   

Proteomes

UP000283053    UP000007151    UP000053240    UP000053268    UP000005204    UP000218220    + More
UP000235965    UP000007266    UP000027135    UP000076502    UP000053097    UP000078540    UP000078492    UP000078541    UP000005203    UP000000311    UP000008237    UP000002358    UP000015103    UP000215335    UP000009046    UP000005205    UP000007819    UP000092460    UP000009192    UP000092443    UP000007801    UP000000803    UP000192221    UP000030765    UP000091820    UP000092445    UP000008820    UP000078200    UP000075900    UP000002320    UP000007755    UP000053454    UP000094527    UP000009136    UP000186698    UP000286641    UP000286640   

PRIDE

H9JEG2    Q8MT33    Q9VSI2   

Pfam

PF00640   PID        + More
PF12473   DUF3694
PF00566   RabGAP-TBC

Interpro

IPR000195   Rab-GTPase-TBC_dom        + More
IPR022164   Kinesin-like       
IPR006020   PTB/PI_dom       
IPR033185   RabGAP1       
IPR035969   Rab-GTPase_TBC_sf       
IPR011993   PH-like_dom_sf       

SUPFAM

SSF47923   SSF47923       

Gene 3D

2.30.29.30    

ProteinModelPortal

A0A3S2P5Z9   A0A212ERJ1   A0A194QNU4   A0A194PR68   H9JEG2   A0A2A4JAU4   + More
A0A2W1BDP8   A0A2J7Q0H9   A0A2J7Q0I6   D6X3W7   A0A067RJX1   A0A1Y1JTN6   A0A154PJM8   A0A1Y1JTN7   A0A224XAP6   A0A069DWY1   A0A026WMF8   A0A023F259   A0A195BEC7   A0A195DI05   A0A195EQV6   A0A088ACG3   A0A1B6CKT3   A0A1B6D067   E1ZXC8   E2B8J0   K7IRD5   T1HQL1   A0A232F0X2   A0A146M2Z8   A0A0A9XPR8   A0A0A9XT17   A0A146M341   E0VTD1   A0A1B6HUV9   A0A158NQS4   A0A0A9XQR2   A0A146LJE7   A0A0A9XML6   A0A0K8SRU6   A0A1B6FZ96   A0A1L8DVR7   A0A0K8TSK8   A0A0K8U1S3   A0A034VF56   J9JYT1   A0A0K8UB34   A0A2S2QE07   A0A0A1XRV4   A0A1B0AYA2   B4KYD0   A0A1A9XWI9   A0A0Q9XNJ0   A0A0A1WP96   A0A0P8ZU93   B3M5J8   T1PE13   Q8MT33   Q9VSI2   A0A1W4US74   A0A084WS41   A0A1A9WR95   A0A1Q3F2H4   A0A1A9Z3C5   Q17ND9   Q17ND8   A0A1A9VYM3   A0A182RU23   B0W6W9   F4WBX7   A0A0L8GQZ5   A0A0L8GR89   A0A0L8GRE5   A0A0L8GS12   A0A0L8GQY9   A0A0L8GS16   A0A2L2YA69   A0A1D2NJA9   A0A3Q1LIH2   A0A1L8F6C7   A0A3Q7QQ65   A0A3Q7TUY1  

PDB

3HZJ     E-value=1.63734e-96,     Score=905

KEGG

101741355    K20284 Rab GTPase-activating protein 1 | (RefSeq) rab GTPase-activating protein 1-like

GO

GO:0005096   GO:0005623   GO:0090630   GO:0017137   GO:0006886   GO:0043087   GO:0005829   GO:0043547   GO:0005515   GO:0007264   GO:0008270   GO:0003700   GO:0005634   GO:0043565   GO:0050793   GO:0003676   GO:0016876   GO:0043039  

PANTHER

PTHR22957:SF205   PTHR22957:SF439  

Length:

1133

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.657709999999997

Exp number, first 60 AAs:

0

Total prob of N-in:

0.02340

outside

1  -  1133

 

 

Pi

272.189507

Theta

168.865452

Tajima's D

1.469697

CLR

0.366683

CSRT

0.776561171941403

Interpretation

Uncertain