Silkworm Genome Informatics Database

Gene

KWMTBOMO08730

Pre Gene Modal

BGIBMGA007911

Annotation

PREDICTED:_serine/arginine_repetitive_matrix_protein_2_isoform_X2_[Bombyx_mori]

Location

Bomo_Chr15(-):3645033-3659584 View in EpiBrowser

Location in the cell

Nuclear Reliability : 4.588

CDS

ATGGTTTCTCTGGTGCTTTTAACGACAGAAGAGGTGCTCCGGAGAAATGGATTCTGGTATCGGTTGGACACAACCTGGGTCACGGAGGAAATGGAACCATTCGAAGATGTGAAACCGGATCACGTTTTCGTCAAGCCGTGGTCTAGAGACATTTACTACGCTAAATTTCCTGATATACCCAGAAGCGAATCCGAAGATGAGAACTCCCTCAGTCTGAAGGGGTTCAGGGTGAAGCATCGCCAATGGAAGTCAAAAGTGGACGTTAAACGCTATAGTTTTTCGAAAATGAATATCACTCAAGTTACTGCTAAATTTACCGACGGTGATTCTACGTGTAATGAATTGAAAAGAGTTTCTTCGTTGGCGGAGGTCAAAGGAACTAATCCTGGTGATGACAAAGTGAGAGCCTTCTTCGAACGTTTGTTGGAAAGCGTCCCACCTCCACCCGTTGAAGACTTGCTATCCACCACCACAAATGCAAACATAACCTCAATCTGTGAAGCACCGAAACGTAATAACGATTTCGAAGATATCGATCTTCCCGATTACGAACATTTCGTCAAGAACAAAATGCAAGATTTAGAAAGTAGTAATTACATTCCGACAACATCGACATTAAAAAGATCAAATCGCAACGTTAATTTCAATCTCGGCAATTCTAAATGTCCATTGGACTGTAACGAGTCTTGGTACGAGTCTATTTACGGTGTGTCGGATTTATTATCTATGGAATATGATGAAAGTATGGACACTTCAAAGCTCGGAGAAATTTCACGCACCGACGAAGACGTCCTGAAAGATATAGAACCTCCTGAAAACGAATTGCAGAAGAATTCGGATCGCGTGCTTTCGGAGCACGAATTGAGGGTACAGCGATCACTGCAGAAACTAAATGTACCTGAATGGTATAAGAACGCACCAGCCCCACGCGAGGGCTTCCTACTTCGAAAGCGACTATCTGACGCATCAGCTTCGGCCGCGCGCTGGTCCGGTCTCAACTCGAAGACCACGTCGCTGGGCAGCCTCGGCGCCGCCAACGCTCAGCCCCCTCCGCCGCAACTGTCACCACACACGACCAGCTTCGGGAGATGGTCGACAAGCCGACTGAATTCCAATCAAACGTCTCCGTGCTCATCGACACGGAGCAGCATCCGTGGTACCAGTCCGCTTTGCTCACCATCGACCCGATCCTCGTTCAGCGCGCGGCAGCCCTATCTCGGCTGGAGGAGCCAAGAACGACTGAATAGCACTCCGAGAACACCGCATGAGAGGCTGGCCTCGTCCCTTCTCCAGCAGAGCGCTGCTTCGTCGAGAGCATCAGAGGAGATCCAATCGTCGATAAAGGAAGTGACGTCGGCGATCGTCCACTACGTGTCCGGGTTGGAACCGGCCAACGGGGACATAGACCGGGAACCGTCGCCTCGATCCAGCCAGAAGCTCTGCTGGCTTGAAAGCTCTTTTGTTGGTACAAAGCCATTGGACTCCCCGCAGACACCGCTGGTTGTTTCGGAAGCCTTACCGCCCCCCCACCCGCGCCCCCCCTCGTCGCTCCGGCTCGACCACCGCGCCACGCCCGACTGGCAGGATTCCCAACGCTCCCTGAATCTCGGTATCGCCCGCCCATCTCCAGGGTCTACCACGTTAGAAGATGTCCTGGATTCGCTACTCGGTCTGCCGTCGCAGCCAACTAGGATACCCACTCCTCAGCCGAGTCCTAGAAAGACTTCAAGCCCGTATTATCTTACCGGTGGCAAGAGCCCTCGATACGAACAATTGGTGAGCAGTGGGCACAGTAGTACGTCCCCGGCGTCAAGGTTCATGGGCACACCGAGTGAGGACCCAAGCTCCTTCACGGACCCCAGTCCCGACCATGATCGACCAGGCAAGGATACAGTTGATACTCCAGCAGCGATGCCAGAGCCGCGACGATCCCGTTCGGCTCATGGCGAACACTCGCGTCGGAAGAGTGAACCTTTCGCTCAACATAGTGCATCCGTAGACCGTCGCACCAGTCTCGATGCTGCGGCACTCCGCCCTAATGAGCAACAACTTACCCATCACGATTCCAAGACGTCCCTAGCTTCTCTCCAAACTGAAAATAGCACTGACGACGCCTACGTCAGATGTAAATACCCAAAGTGCTCTTCTCGAGCCCTTTTGTCTGAAGCTAAAAGACATTACAAAGCGTGTCACAATTGCACCACAATGTATTGCTCTAGGGAATGTAGACGAGCTCACTGGGAGAAACACAGAAAGGTATGTCTACACTCGCGGGCGAGCGCTCTGTGCAGACAAATCATATCGGCGGCTAAAGAGGATGCGGATTCTTTACATCAAATTAGCACTATAGCTCACAAAGGCTACTTAAGTCAAGGAAGGGGGGTCGTCAAAGTATTTTTTACTAGTCCCGAATCAGCGGAGAAATTCACTAACCACGGATTTCAGTATCTAACTGAACCTGAATACATGAAGTGGACATCGCTACAACCCAACGAAATGGGCGTGGAACTATACACGGAAGTGGTCAAGCTATGTAAGACCTACAATCCCGAGACGAGGGTTATTTTGTACGTGGCCGTATGTATTATTAGCGAAGTACCCACAAAGGGGGCCGTAAAGTGGGAGAGGCAGATGGTGTCGCGGTGTGCCAAGTTACGTTTGAGCAAAACCGTAACGGTCATCATACAAGAGCAATATCGTCGACGGCAAAGGAGAAACAGTAAAAACACACCAGACGAATGGGAGACGTTAATTTTGACATCCAAAATGGACGTGGCAGGCGAGAAAAATGCGGCTACAGCTCACAAATTCAGAGAAATATGTTTCTACAACATACTGAAAGAGCTTGAGAACAGGGGGGTCGTGCTCAAAAAACACTTCCCCGAAGTTTATTCACGATTAACGGCTTACGTGGACGGCACAAGCGATAGATTTATCCCCATGACTATCTATCCTAAGGACGTATCTAGCGGAAAGTCGTTCATGTGCATCATTATACCCGACAACGACATAGAGAGTGGGACCCCGACGGATGGTAAAGTGACCACGGTGGACGTCGGCATCGACCGCTCGCGGCATCAGCTGTCCACTCCCATGTGA

Protein

MVSLVLLTTEEVLRRNGFWYRLDTTWVTEEMEPFEDVKPDHVFVKPWSRDIYYAKFPDIPRSESEDENSLSLKGFRVKHRQWKSKVDVKRYSFSKMNITQVTAKFTDGDSTCNELKRVSSLAEVKGTNPGDDKVRAFFERLLESVPPPPVEDLLSTTTNANITSICEAPKRNNDFEDIDLPDYEHFVKNKMQDLESSNYIPTTSTLKRSNRNVNFNLGNSKCPLDCNESWYESIYGVSDLLSMEYDESMDTSKLGEISRTDEDVLKDIEPPENELQKNSDRVLSEHELRVQRSLQKLNVPEWYKNAPAPREGFLLRKRLSDASASAARWSGLNSKTTSLGSLGAANAQPPPPQLSPHTTSFGRWSTSRLNSNQTSPCSSTRSSIRGTSPLCSPSTRSSFSARQPYLGWRSQERLNSTPRTPHERLASSLLQQSAASSRASEEIQSSIKEVTSAIVHYVSGLEPANGDIDREPSPRSSQKLCWLESSFVGTKPLDSPQTPLVVSEALPPPHPRPPSSLRLDHRATPDWQDSQRSLNLGIARPSPGSTTLEDVLDSLLGLPSQPTRIPTPQPSPRKTSSPYYLTGGKSPRYEQLVSSGHSSTSPASRFMGTPSEDPSSFTDPSPDHDRPGKDTVDTPAAMPEPRRSRSAHGEHSRRKSEPFAQHSASVDRRTSLDAAALRPNEQQLTHHDSKTSLASLQTENSTDDAYVRCKYPKCSSRALLSEAKRHYKACHNCTTMYCSRECRRAHWEKHRKVCLHSRASALCRQIISAAKEDADSLHQISTIAHKGYLSQGRGVVKVFFTSPESAEKFTNHGFQYLTEPEYMKWTSLQPNEMGVELYTEVVKLCKTYNPETRVILYVAVCIISEVPTKGAVKWERQMVSRCAKLRLSKTVTVIIQEQYRRRQRRNSKNTPDEWETLILTSKMDVAGEKNAATAHKFREICFYNILKELENRGVVLKKHFPEVYSRLTAYVDGTSDRFIPMTIYPKDVSSGKSFMCIIIPDNDIESGTPTDGKVTTVDVGIDRSRHQLSTPM

Uniprot

H9JEG4 A0A212ERI2 A0A437BSD5 A0A2W1BTK2 A0A2H1VNZ0 A0A2A4J2P7 + More
A0A194PPS9 A0A026WRL5 A0A0R1DND6 M9PDY6 B4IIJ5 B4P6D6 A0A0Q5VJH7 T1HEN5 M9PDE6

Pubmed

19121390 22118469 28756777 26354079 24508170 17994087 + More
17550304 10731132 12537568 12537572 12537573 12537574 16110336 17569856 17569867

EMBL

BABH01003055 BABH01003056 BABH01003057 AGBW02013012 OWR44100.1 RSAL01000014 + More
RVE53241.1 KZ150012 PZC75063.1 ODYU01003585 SOQ42533.1 NWSH01003932 PCG65663.1 KQ459596 KPI95451.1 KK107119 EZA58652.1 CM000158 KRJ98772.1 AE014134 AGB93220.1 CH480843 EDW49745.1 EDW89893.2 CH954179 KQS61776.1 ACPB03012805 AGB93219.1

Proteomes

UP000005204 UP000007151 UP000283053 UP000218220 UP000053268 UP000053097 + More
UP000002282 UP000000803 UP000001292 UP000008711 UP000015103

PRIDE

H9JEG4 M9PDY6 M9PDE6

Pfam

PF01753 zf-MYND

Interpro

IPR038825 Apical_junction + More
IPR002893 Znf_MYND

ProteinModelPortal

H9JEG4 A0A212ERI2 A0A437BSD5 A0A2W1BTK2 A0A2H1VNZ0 A0A2A4J2P7 + More
A0A194PPS9 A0A026WRL5 A0A0R1DND6 M9PDY6 B4IIJ5 B4P6D6 A0A0Q5VJH7 T1HEN5 M9PDE6

KEGG

101741581 no KO assigned | (RefSeq) serine/arginine repetitive matrix protein 1

GO

GO:0045216 GO:0008157 GO:0016328 GO:0005886

PANTHER

PTHR21517

Length:

1032

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.00893

Exp number, first 60 AAs:

0

Total prob of N-in:

0.00000

outside

1 - 1032

Pi

190.191424

Theta

181.791281

Tajima's D

0.16128

CLR

163.58488

CSRT

0.415329233538323

Interpretation

Uncertain

Sequence

Summary

Ontologies

Topology

Population Genetic Test Statistics