Gene

KWMTBOMO08728

Annotation

endonuclease-reverse_transcriptase_[Bombyx_mori]

Location

Bomo_Chr15(-):3613968-3616904      View in EpiBrowser

Location in the cell

Nuclear   Reliability : 1.933

CDS

ATGGAATCTCATGACATCTCCATACTAGGCATCAGTGAAACTCACATGCGTGGTAATGGCCACTTCACCACTGTGACAGGGAACACCATGTACTTCTCAGGCTGTGAAGATTCAAGTTTGAGTGGAGTCGGAATCATATTGCCGCCACACTTAAACAAATATGTCCTCGGTTATAATCCGGTGTCTGATGGAATCTTGACAATGAAACTGAATACCAATCCATGTGTGCTGAATGTAATACAGATATACGCACCGACGGCACAAGCACAGGATGAGTTAATTGTGGACTTCTATGGAAAACTGGAGGAAATACTGAATTCTATACCTAGTCGGGAAATTAAGATAATTCTTGGTGATTGGAATGCCAAAGTTGGCAGTACACTGGATGATAATCATATCAGGAGCACAGTTGGAAAATTTGGACTTGGCATTAGGAATGAACGGGGTGAAAAACTGATCGAGTTCTGCATTGAAAGAAATCTCAGTATTATGAACACGTACTTCCAACATCATCCAAGACGCTTGTACACGTGGAGATCTCCAGGCGACAGGTACAGAAATCAAATCGACTACATCATTCTAGATGGCCGCTGGAGATCCTCAGTATCTAACGTGAAGACCTTTCCCGGCGCAGAGTGCGGCTCCGACCATAACCTGCTCGTAGCTAACTTCTCGCTGCGTTTAAAGGCGCCCAGACGTCAACCACCAAAACCCAATAGTTTGGATCCTTCCGAACAACCAATCTTCCGAGAGGCATTAGAGGCGATCTTGAAGGATTCTCCAGCGCACATTCACGCTAACGCTGATACACAGTGGAAACACTTGAAAGGTCATATCAACGATGCGCTGGACCAGATCGCTAAAAAGAAAAAGCCAGAACCGAAGAAAAAATGCTGGATCTCCGATCATTCGTGGGAGCTTATTCAACGCAGAAAAGACTTAAAAACTAGCGGTTTGCAAGATGGTGCAAAAGTTAAATACTCCGAACTTAGCAGAGCTATTCGGGTCAGTTGTCGCCTTGACAAGAACCACTTTGTTGAGGGTATTTGCCGTGACATTGAGCGCTTCTCGAACAAGTTGCAGACTGCAGACCTTTTTAAGAAAGTTAGAGTCCTTTCCAGGCAGTTCAAGGCTAAATCGTGGGTCATAAGAGATGCCGACGGAACTGTACTACACGAGTTCGACCGCATTGCCGAGAGATGGCGGGCGTACTGTGAGCAATTGTATACAGATTCCCACTCGACATCCGGGATTAATCCTGAATGGAAGGATCTAGAACTGGAACCCATGATTTTACCTTCCGAAATATCCACCGCACTGGAATCTCTTAAGAAGAATAAGGCTCCTGGAAGCGATCGGATTACAGCGGAGGTGCTTTATGCTATGGGTGACTTGGGTGTTATGACTCTATATAAGATCTGCTCACATATATGGCAACACGGTGATTGGCCGCGGGATTGGTTGGAATCCATTATTCTTCCGCTACACAAGAAAGGATCAACCAAGAATTGCGACAATTATCGAACCTTGTCTCTCATCTCACATGCAAGTAAAATCTTGCTTCACATCCTCAACAACCGCATCCGTTACTACCTTGATTGGCAAATTCCGCCAGAGCAAGCGGGTTTCGTGAAGGGCAAGGGTACTCGTGCACAGATTCTCAACATCAGGCAGATTGTTGAGAAAGCATATGAGTTTGACACGCCAGTGATAATGTGTTTCGTCGACTATAGCAAGGCGTTCGACTGTGTCAACTGGAGTTGTTTATGGAAGGTTCTACAAGAACTTGGGGTACCAAATCATCTCATCGCCTTACTTCGCAACTTGTATGGCTCAAGTCAGGCAGTCGTAAGAGTCGATAGAACAACCTCGAAACCTTTTAAATTTCACAAAGGAGTACGCCAAGGTTGTATTTTATCGCCCATTCTTTTCAACGCCTATGGGGAGCACATAATGAGACGGACCTGCGAGAATTGGGACGGTGGCATTACAGTTGGTGGCGTGAAAATCACCAACCTTCGATACGCCGATGATACTACTCTTCTTGCAGCGAATGAGTCGGAAATGGTTGCGCTTCTGGACCGAATGGAGCGGATAAGCAAGGAGATGGGACTTTCCATAAACAGGTCCAAAACCAAAGTCATGGTGGTGGATAGGTCTGGAAAATTGGAACTCACTGGCGCATTAGACCTAGAAATAGTGGACAATTTTAACTACCTGGGTTCCAACATTAGTAACAATGGCTCGTGCGAGAAGGAAGTGCGCCGAAGAATTGGTATGACTAAGAGTGCCATGACTCAGCTCGGAAAAATCTGGAGAGATCGCAACATATCCGTAAAGACCAAAACCAAACTGGTACGGACTCTAGTTTTCTCGATTTTTTCGTATGGCGCTGAGACCTGGTCACTGAAATCTGCAGACCGCAGACGCATTGACGCCTTTGAGATGTGGTGCTGGAGAAAGATGCTGCGTATTCCGTGGACAGCATTTCGGACCAACATATCAATCTTGCAAGAACTCAAAATCTCCTCGCGGCTGTCATCCGAGTGTCTTCGTAGAGTCCTTGAATACTTTGGTCACATCGCACGGAAGGATGGTAGCAATCTCGAGAGGCTCATCGTGACTGGTAAGGTAGATGGGAAAAGACCTCGGGGGCGCAGCCCAATACGTTGGTCCGACCAGATCCGCACCGCTCTTGATTCCACATTTCACAACGCCCTCCACACCGCCAGAGACAAGAATGGATGGAGAAAAATCGTGCGTGCGAAGGTGATACAAAAGGGTGGTCACGACCCTCAGCAATGA

Protein

MESHDISILGISETHMRGNGHFTTVTGNTMYFSGCEDSSLSGVGIILPPHLNKYVLGYNPVSDGILTMKLNTNPCVLNVIQIYAPTAQAQDELIVDFYGKLEEILNSIPSREIKIILGDWNAKVGSTLDDNHIRSTVGKFGLGIRNERGEKLIEFCIERNLSIMNTYFQHHPRRLYTWRSPGDRYRNQIDYIILDGRWRSSVSNVKTFPGAECGSDHNLLVANFSLRLKAPRRQPPKPNSLDPSEQPIFREALEAILKDSPAHIHANADTQWKHLKGHINDALDQIAKKKKPEPKKKCWISDHSWELIQRRKDLKTSGLQDGAKVKYSELSRAIRVSCRLDKNHFVEGICRDIERFSNKLQTADLFKKVRVLSRQFKAKSWVIRDADGTVLHEFDRIAERWRAYCEQLYTDSHSTSGINPEWKDLELEPMILPSEISTALESLKKNKAPGSDRITAEVLYAMGDLGVMTLYKICSHIWQHGDWPRDWLESIILPLHKKGSTKNCDNYRTLSLISHASKILLHILNNRIRYYLDWQIPPEQAGFVKGKGTRAQILNIRQIVEKAYEFDTPVIMCFVDYSKAFDCVNWSCLWKVLQELGVPNHLIALLRNLYGSSQAVVRVDRTTSKPFKFHKGVRQGCILSPILFNAYGEHIMRRTCENWDGGITVGGVKITNLRYADDTTLLAANESEMVALLDRMERISKEMGLSINRSKTKVMVVDRSGKLELTGALDLEIVDNFNYLGSNISNNGSCEKEVRRRIGMTKSAMTQLGKIWRDRNISVKTKTKLVRTLVFSIFSYGAETWSLKSADRRRIDAFEMWCWRKMLRIPWTAFRTNISILQELKISSRLSSECLRRVLEYFGHIARKDGSNLERLIVTGKVDGKRPRGRSPIRWSDQIRTALDSTFHNALHTARDKNGWRKIVRAKVIQKGGHDPQQ

Uniprot

D7F163   D7F168   D7F172   D7F161   D7F162   A0A2W1BNH4   + More
D5LB39   D7F175   D7F167   A0A402EKC4   A0A402EWU2   A0A402F9A7   A0A402EKM3   A0A402E7R7   A0A402ET28   A0A402F125   A0A402F406   A0A402EBC2   A0A402E7Q0   A0A402FC20   A0A402EVG7   A0A402F575   A0A402ECS2   A0A402F4E6   A0A402EBP1   A0A402F9C1   A0A402FAG4   A0A402EKB1   A0A402EKK1   A0A402EWP9   A0A402EWN2   A0A402E768   A0A402EEU1   A0A402F3F3   D7F174   A0A443QYR6   A0A402EST4   A0A402F3Q6   A0A3S3P648   A0A402EUJ0   A0A3Q1NFT8   A0A0J7KGF7   H2YWZ5   A0A2A4JBK9   D5LB38   A0A2V9X8L4   W5NGM3   A0A023GD30   H3J6U9   A0A076N3Z4   A0A2S2PMS6   A0A076N1B6   A0A2J7QR01   A0A2J7PTY0   A0A2J7PW81   A0A2J7REE7   A0A2J7QI56   A0A2J7RP47   A0A2J7PQA3   A0A2J7RLI7   A0A2J7PMJ3   A0A2J7Q6P7   A0A2J7RGX2   A0A2J7Q3T8   A0A2J7QH51   A0A2J7R4R4   A0A2J7QGT4   A0A2J7QKB0   A0A2J7Q0C6   A0A2J7QGJ2   A0A2J7Q5D5   A0A2J7QEJ0   A0A2J7PHM9   A0A2J7Q2Z3   A0A2J7QUN7   A0A2J7QGX8   A0A2J7Q6A8   A0A146LUY8   A0A2A4JXP9   A0A2B7ZXS2   A0A1W7RAL1  

Pubmed

20470440    28756777    19393038    26823975   

EMBL

FJ265548    ADI61816.1    FJ265553    ADI61821.1    FJ265557    ADI61825.1    + More
FJ265546    ADI61814.1    FJ265547    ADI61815.1    KZ150025    PZC74827.1    GU815090    ADF18553.1    FJ265560    ADI61828.1    FJ265552    ADI61820.1    BDOT01000017    GCF44634.1    BDOT01000056    GCF48696.1    BDOT01000150    GCF53030.1    BDOT01000018    GCF44752.1    BDOT01000002    GCF40259.1    BDOT01000039    GCF47373.1    BDOT01000077    GCF50202.1    BDOT01000094    GCF51020.1    BDOT01000005    GCF41464.1    GCF40210.1    BDOT01000183    GCF53956.1    BDOT01000049    GCF48208.1    BDOT01000105    GCF51450.1    BDOT01000006    GCF41910.1    BDOT01000101    GCF51279.1    GCF41584.1    GCF53027.1    BDOT01000165    GCF53431.1    GCF44637.1    GCF44732.1    BDOT01000054    GCF48631.1    GCF48632.1    GCF39993.1    BDOT01000008    GCF42705.1    BDOT01000090    GCF50924.1    FJ265559    ADI61827.1    NCKU01003098    RWS08177.1    BDOT01000038    GCF47275.1    GCF51029.1    NCKU01004395    RWS06003.1    BDOT01000045    GCF47814.1    LBMM01007694    KMQ89503.1    NWSH01001998    PCG69477.1    GU815089    ADF18552.1    QIAP01000240    PYX61602.1    AHAT01008485    GBBM01003639    JAC31779.1    AAGJ04118689    AAGJ04161747    KF881086    AIJ27485.1    GGMR01018096    MBY30715.1    KF881087    AIJ27486.1    NEVH01012082    PNF31006.1    NEVH01021219    PNF19787.1    NEVH01020937    PNF20581.1    NEVH01005277    PNF39212.1    NEVH01013959    PNF28275.1    NEVH01002141    PNF42599.1    NEVH01022640    NEVH01008218    NEVH01005885    PNF18513.1    PNF34430.1    PNF38481.1    NEVH01002684    PNF41704.1    NEVH01023985    PNF17546.1    NEVH01017460    PNF24248.1    NEVH01003750    PNF40091.1    NEVH01019064    PNF23230.1    NEVH01014358    PNF27914.1    NEVH01007402    PNF35815.1    NEVH01014359    PNF27789.1    NEVH01013275    PNF29009.1    NEVH01019971    PNF22037.1    NEVH01018372    NEVH01014371    NEVH01011208    NEVH01002697    NEVH01002552    PNF23678.1    PNF27673.1    PNF31697.1    PNF41592.1    PNF42118.1    NEVH01017570    PNF23798.1    NEVH01015309    PNF27009.1    NEVH01025135    PNF15828.1    NEVH01019075    PNF22955.1    NEVH01023960    NEVH01010501    PNF17732.1    PNF32290.1    PNF27813.1    NEVH01017534    PNF24114.1    GDHC01007098    GDHC01001590    JAQ11531.1    JAQ17039.1    NWSH01000469    PCG76200.1    PDHN01000949    PGH37547.1    GFAH01000222    JAV48167.1   

Proteomes

UP000288954    UP000285301    UP000009136    UP000036403    UP000007875    UP000218220    + More
UP000247801    UP000018468    UP000007110    UP000235965   

PRIDE

D7F163    D7F168    D7F172    D7F161    D7F162    D5LB39    + More
D7F175    D7F167    D7F174    D5LB38   

Pfam

PF00078   RVT_1        + More
PF14529   Exo_endo_phos_2
PF03372   Exo_endo_phos
PF00168   C2

Interpro

IPR036691   Endo/exonu/phosph_ase_sf        + More
IPR005135   Endo/exonuclease/phosphatase       
IPR000477   RT_dom       
IPR002138   Pept_C14_p10       
IPR035892   C2_domain_sf       
IPR000008   C2_dom       
IPR000637   HMGI/Y_DNA-bd_CS       

SUPFAM

SSF56219   SSF56219       

Gene 3D

3.60.10.10     2.60.40.150    

ProteinModelPortal

D7F163   D7F168   D7F172   D7F161   D7F162   A0A2W1BNH4   + More
D5LB39   D7F175   D7F167   A0A402EKC4   A0A402EWU2   A0A402F9A7   A0A402EKM3   A0A402E7R7   A0A402ET28   A0A402F125   A0A402F406   A0A402EBC2   A0A402E7Q0   A0A402FC20   A0A402EVG7   A0A402F575   A0A402ECS2   A0A402F4E6   A0A402EBP1   A0A402F9C1   A0A402FAG4   A0A402EKB1   A0A402EKK1   A0A402EWP9   A0A402EWN2   A0A402E768   A0A402EEU1   A0A402F3F3   D7F174   A0A443QYR6   A0A402EST4   A0A402F3Q6   A0A3S3P648   A0A402EUJ0   A0A3Q1NFT8   A0A0J7KGF7   H2YWZ5   A0A2A4JBK9   D5LB38   A0A2V9X8L4   W5NGM3   A0A023GD30   H3J6U9   A0A076N3Z4   A0A2S2PMS6   A0A076N1B6   A0A2J7QR01   A0A2J7PTY0   A0A2J7PW81   A0A2J7REE7   A0A2J7QI56   A0A2J7RP47   A0A2J7PQA3   A0A2J7RLI7   A0A2J7PMJ3   A0A2J7Q6P7   A0A2J7RGX2   A0A2J7Q3T8   A0A2J7QH51   A0A2J7R4R4   A0A2J7QGT4   A0A2J7QKB0   A0A2J7Q0C6   A0A2J7QGJ2   A0A2J7Q5D5   A0A2J7QEJ0   A0A2J7PHM9   A0A2J7Q2Z3   A0A2J7QUN7   A0A2J7QGX8   A0A2J7Q6A8   A0A146LUY8   A0A2A4JXP9   A0A2B7ZXS2   A0A1W7RAL1  

KEGG

105841419    no KO assigned | (RefSeq) uncharacterized LOC105841419

GO

GO:0003964   GO:0004519   GO:0004197   GO:0006355  

Length:

934

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.01623

Exp number, first 60 AAs:

0.00284

Total prob of N-in:

0.00015

outside

1  -  934

 

 

Pi

21.412169

Theta

20.107978

Tajima's D

0.289281

CLR

508.647855

CSRT

0.452477376131193

Interpretation

Uncertain