Gene

KWMTBOMO08727

Pre Gene Modal

BGIBMGA007672

Annotation

PREDICTED:_ras-related_protein_Rab-9A_[Amyelois_transitella]

Location

Bomo_Chr15(+):3608685-3627290      View in EpiBrowser

Location in the cell

Cytoplasmic   Reliability : 2.046

CDS

ATGGAGGAAAATGATCGAAGAAATCAGAACAAGAACACTTTATTGAAAATTGTGATACTCGGCGACGGTGGAGTCGGTAAATCATGTTTGATGAGCAGATTCATTTCGAACCATTTCGATGATCATAGTTTCCACACTATAGGTGTTGAATTCATGAATAAAACCATAGAAGTAAACGGAAAACAGTATACACTCCAGGTATGGGACACGGCCGGCCAAGAAAGGTTCAAATCGCTCCGGACTCCATTCTACAGAGGATCAGATGTATGCATACTGGCCTACGCTATAGATGACAGAAGTTCATTCAATAACATCAAGATGTGGTTAAACGAATTCCTGCATTACGCCGGCGTCAAGAACGGCATTGAAAGATATCCTTTCATGGTCGTTGGTAATAAGTCGGACGTGCCGAGCAAGGACAGAGAGGTGACTCACGATCAGCTGAAACAGTGGTGTGACGATAACAAAATATCGACGTATATAGAGACTTCAGCTAAAAACGATAATAATGTCGTCGAAGCATTCTCAATGGCGGTCCAGAGGTGGGTAGATCTGGACCAAAGAGCCGAGAAAGAGCTGGGAATGTTCCAGCATCCTGATGCGGTGACGCTGCACGGCAACGGAACCGCGTCCGGTTTCCGGGCGACGTGTTGTTCCCGGATCACTGACACATTATCGTTTTGGAGTTTTATAAAACCGGAATTCCCCTCCGGTATTTCCCCGGCCCAGTGA

Protein

MEENDRRNQNKNTLLKIVILGDGGVGKSCLMSRFISNHFDDHSFHTIGVEFMNKTIEVNGKQYTLQVWDTAGQERFKSLRTPFYRGSDVCILAYAIDDRSSFNNIKMWLNEFLHYAGVKNGIERYPFMVVGNKSDVPSKDREVTHDQLKQWCDDNKISTYIETSAKNDNNVVEAFSMAVQRWVDLDQRAEKELGMFQHPDAVTLHGNGTASGFRATCCSRITDTLSFWSFIKPEFPSGISPAQ

Uniprot

A0A2H1X2N7   A0A437BST0   A0A2A4J0R4   A0A194PRS2   A0A212F638   A0A2W1BLA3   + More
A0A194QMR6   V5GY67   D2A6H3   A0A0T6BE23   A0A1Y1L642   A0A0L7KNW7   A0A067RXB1   N6U275   A0A0C9PNP4   A0A2P8XLF5   A0A2J7QK31   A0A195CNW9   A0A3L8DNM7   A0A151JC01   A0A026W0V6   A0A158NIK9   A0A151JUR4   A0A195BDU7   A0A154P9A7   A0A1W4WWP1   A0A0K8TS83   A0A1B6FAI8   A0A1A9Z5N5   A0A151XFW2   A0A0J7KWT0   D3TR69   E2AVX6   A0A0L0BRW4   U5EZP5   A0A1B6K0X3   A0A0K8V235   A0A0A1X5K1   B0WPG9   A0A1I8NFF6   T1PJ71   W8AIL9   A0A182GBF3   A0A0N0BJS3   A0A1I8NU36   A0A088ACD8   A0A2A3EFR8   V9ILM0   Q16Y42   A0A0L7R585   A0A182YDK0   A0A1Q3FBP4   A0A2M3ZJC7   W5JC89   A0A182F2F1   A0A2M4ASB0   A0A2M4AS97   A0A182NC18   A0A084W8V2   A0A182K781   A0A310SLI1   A0A182JDL4   A0A2R7WB12   A0A182STW9   A0A0A9XSA8   A0A182QKV7   A0A182PLN6   A0A182X340   A0A182KTR8   A0A182HRN2   A0A182V8G0   A0A069DX77   A0A224XT07   Q7Q1C9   A0A182M0J1   B3MK03   A0A1A9X067   A0A182WGS0   B3NM57   B4KK67   B4MYQ1   B4PAY4   A0A023F4D3   Q9VIW6   A0A0V0G7Q0   B4Q9X9   A0A232EXQ9   B4I5V0   A0A182RBK0   A0A1W4V2X6   A0A0P4VWG0   A0A1B6E210   K7IRN9   A0A0B4UDF3   E2BFD5   E9I8E2   T1HI99   A0A0P4VK14   A0A1A7WRW5  

Pubmed

26354079    22118469    28756777    18362917    19820115    28004739    + More
26227816    24845553    23537049    29403074    30249741    24508170    21347285    26369729    20353571    20798317    26108605    25830018    25315136    24495485    26483478    17510324    25244985    20920257    23761445    24438588    25401762    26823975    20966253    26334808    12364791    14747013    17210077    17994087    17550304    25474469    10731132    12537568    12537572    12537573    12537574    16110336    17569856    17569867    26109357    26109356    22936249    28648823    20075255    25542378    21282665    27129103   

EMBL

ODYU01012970    SOQ59537.1    RSAL01000014    RVE53239.1    NWSH01003932    PCG65665.1    + More
KQ459596    KPI95449.1    AGBW02010081    OWR49193.1    KZ150012    PZC75061.1    KQ461195    KPJ06639.1    GALX01001684    JAB66782.1    KQ971348    EFA05511.2    LJIG01001395    KRT85545.1    GEZM01063640    JAV69044.1    JTDY01008077    KOB64756.1    KK852405    KDR24529.1    APGK01052664    KB741213    KB631874    ENN72652.1    ERL86889.1    GBYB01002738    GBYB01006098    JAG72505.1    JAG75865.1    PYGN01001783    PSN32825.1    NEVH01013278    PNF28936.1    KQ977481    KYN02355.1    QOIP01000006    RLU22034.1    KQ979101    KYN22632.1    KK107503    EZA49643.1    ADTU01016901    KQ981733    KYN36553.1    KQ976513    KYM82389.1    KQ434831    KZC07808.1    GDAI01000386    JAI17217.1    GECZ01022519    JAS47250.1    KQ982179    KYQ59266.1    LBMM01002320    KMQ94987.1    EZ423921    ADD20197.1    GL443213    EFN62398.1    JRES01001455    KNC22766.1    GANO01000406    JAB59465.1    GECU01002625    JAT05082.1    GDHF01019664    JAI32650.1    GBXI01007688    GBXI01006988    JAD06604.1    JAD07304.1    DS232023    EDS32348.1    KA648165    AFP62794.1    GAMC01018146    GAMC01018145    JAB88410.1    JXUM01052557    KQ561739    KXJ77684.1    KQ435712    KOX79391.1    KZ288256    PBC30633.1    JR053789    AEY62018.1    CH477525    EAT39541.1    KQ414654    KOC66050.1    GFDL01010049    JAV24996.1    GGFM01007936    MBW28687.1    ADMH02001841    ETN60938.1    GGFK01010329    MBW43650.1    GGFK01010330    MBW43651.1    ATLV01021515    KE525319    KFB46646.1    KQ760132    OAD61834.1    KK854396    PTY15435.1    GBHO01021068    GBRD01004998    GDHC01007787    JAG22536.1    JAG60823.1    JAQ10842.1    AXCN02002066    APCN01001728    GBGD01002950    JAC85939.1    GFTR01003468    JAW12958.1    AAAB01008980    EAA14215.3    AXCM01001931    CH902620    EDV32458.1    CH954179    EDV54657.1    CH933807    EDW11585.1    CH963913    EDW77240.1    CM000158    EDW90413.1    GBBI01002838    JAC15874.1    AE014134    AY071139    AAF53798.1    AAL48761.1    GECL01002123    JAP04001.1    CM000361    CM002910    EDX05509.1    KMY91009.1    NNAY01001716    OXU23145.1    CH480822    EDW55756.1    GDRN01091331    JAI60290.1    GEDC01005333    JAS31965.1    KP216759    AJC97116.1    GL448009    EFN85595.1    GL761538    EFZ23143.1    ACPB03001246    GDKW01004052    JAI52543.1    HADW01006996    HADX01008871    SBP08396.1   

Proteomes

UP000283053    UP000218220    UP000053268    UP000007151    UP000053240    UP000007266    + More
UP000037510    UP000027135    UP000019118    UP000030742    UP000245037    UP000235965    UP000078542    UP000279307    UP000078492    UP000053097    UP000005205    UP000078541    UP000078540    UP000076502    UP000192223    UP000092445    UP000075809    UP000036403    UP000000311    UP000037069    UP000002320    UP000095301    UP000069940    UP000249989    UP000053105    UP000095300    UP000005203    UP000242457    UP000008820    UP000053825    UP000076408    UP000000673    UP000069272    UP000075884    UP000030765    UP000075881    UP000075880    UP000075901    UP000075886    UP000075885    UP000076407    UP000075882    UP000075840    UP000075903    UP000007062    UP000075883    UP000007801    UP000091820    UP000075920    UP000008711    UP000009192    UP000007798    UP000002282    UP000000803    UP000000304    UP000215335    UP000001292    UP000075900    UP000192221    UP000002358    UP000008237    UP000015103   

PRIDE

Q9VIW6   

Pfam

PF00071   Ras        + More
PF14622   Ribonucleas_3_3
PF00636   Ribonuclease_3
PF00035   dsrm

Interpro

IPR027417   P-loop_NTPase        + More
IPR001806   Small_GTPase       
IPR005225   Small_GTP-bd_dom       
IPR041824   Rab9       
IPR036389   RNase_III_sf       
IPR014720   dsRBD_dom       
IPR011907   RNase_III       
IPR000999   RNase_III_dom       

SUPFAM

SSF52540   SSF52540        + More
SSF69065   SSF69065       

Gene 3D

1.10.1520.10    

CDD

cd04116  Rab9
cd00048  DSRM
cd00593  RIBOc

ProteinModelPortal

A0A2H1X2N7   A0A437BST0   A0A2A4J0R4   A0A194PRS2   A0A212F638   A0A2W1BLA3   + More
A0A194QMR6   V5GY67   D2A6H3   A0A0T6BE23   A0A1Y1L642   A0A0L7KNW7   A0A067RXB1   N6U275   A0A0C9PNP4   A0A2P8XLF5   A0A2J7QK31   A0A195CNW9   A0A3L8DNM7   A0A151JC01   A0A026W0V6   A0A158NIK9   A0A151JUR4   A0A195BDU7   A0A154P9A7   A0A1W4WWP1   A0A0K8TS83   A0A1B6FAI8   A0A1A9Z5N5   A0A151XFW2   A0A0J7KWT0   D3TR69   E2AVX6   A0A0L0BRW4   U5EZP5   A0A1B6K0X3   A0A0K8V235   A0A0A1X5K1   B0WPG9   A0A1I8NFF6   T1PJ71   W8AIL9   A0A182GBF3   A0A0N0BJS3   A0A1I8NU36   A0A088ACD8   A0A2A3EFR8   V9ILM0   Q16Y42   A0A0L7R585   A0A182YDK0   A0A1Q3FBP4   A0A2M3ZJC7   W5JC89   A0A182F2F1   A0A2M4ASB0   A0A2M4AS97   A0A182NC18   A0A084W8V2   A0A182K781   A0A310SLI1   A0A182JDL4   A0A2R7WB12   A0A182STW9   A0A0A9XSA8   A0A182QKV7   A0A182PLN6   A0A182X340   A0A182KTR8   A0A182HRN2   A0A182V8G0   A0A069DX77   A0A224XT07   Q7Q1C9   A0A182M0J1   B3MK03   A0A1A9X067   A0A182WGS0   B3NM57   B4KK67   B4MYQ1   B4PAY4   A0A023F4D3   Q9VIW6   A0A0V0G7Q0   B4Q9X9   A0A232EXQ9   B4I5V0   A0A182RBK0   A0A1W4V2X6   A0A0P4VWG0   A0A1B6E210   K7IRN9   A0A0B4UDF3   E2BFD5   E9I8E2   T1HI99   A0A0P4VK14   A0A1A7WRW5  

PDB

2OCB     E-value=2.25683e-55,     Score=543

KEGG

101741875    K07899 Ras-related protein Rab-9A | (RefSeq) ras-related protein Rab-9B

GO

GO:0005525   GO:0003924   GO:0032482   GO:0005829   GO:0042147   GO:0006886   GO:0005769   GO:0044877   GO:0005770   GO:0005802   GO:0008021   GO:0045202   GO:0055037   GO:0031982   GO:0016192   GO:0003723   GO:0004525   GO:0016075   GO:0006396   GO:0007264   GO:0008270   GO:0003700   GO:0005634   GO:0043565   GO:0050793   GO:0003676   GO:0016876   GO:0043039  

Length:

243

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

1.48061

Exp number, first 60 AAs:

1.47413

Total prob of N-in:

0.35458

outside

1  -  243

 

 

Pi

197.296602

Theta

178.244877

Tajima's D

0.87194

CLR

1.522218

CSRT

0.620468976551172

Interpretation

Uncertain