Gene

KWMTBOMO08723

Pre Gene Modal

BGIBMGA007914

Annotation

PREDICTED:_nuclear_hormone_receptor_FTZ-F1_beta_[Bombyx_mori]

Location

Bomo_Chr15(-):3535928-3538784      View in EpiBrowser

Transcription factor

SF-like

Location in the cell

Nuclear   Reliability : 2.437

CDS

ATGTTTGGGGGAATACGACACAGGGAAATCGACGACCAAATCTGCCTGCTGATCAACAGTTGGTGCGAGCTGCTTGTGCTTTCTTGCTGCTACCGCGGTGTCAGCACCCCGGGTGAAGTGAGAGTCGGAGGCGGTAGAGGCATCACTCTACATCAAAGTGCCAAACTCGGTTTGACGCCGTGTATAGAACGGATGCTGAGCTTTACTGATCACTTGAGGAGGCTACGCGTCGACAGATACGAATACGTTGCTCTTAAAGTCATCGTTCTATTGACTTCAGACGCGCCTGAGCTACGCGAGTCCGAAAAAGTTCGAGCCTCGCAAGAGAAAGCTTTGGCAGCCCTGCAAGCTTACATAGCGACTCATTCGCCCGGAACACCCGCTAAGTTTGGTGAACTCTTGCTCCGGATTCCGGAACTGCAGAGAACATGTCAGTTCTTCATGCAAGTCGGTAAAGAAATGTTAAATCCCGCCAACAAGAATAAAGATGGCGACGGACAGAGCTTCAACCTCCTTATGGAATTACTGAGAGGTGACCATTAA

Protein

MFGGIRHREIDDQICLLINSWCELLVLSCCYRGVSTPGEVRVGGGRGITLHQSAKLGLTPCIERMLSFTDHLRRLRVDRYEYVALKVIVLLTSDAPELRESEKVRASQEKALAALQAYIATHSPGTPAKFGELLLRIPELQRTCQFFMQVGKEMLNPANKNKDGDGQSFNLLMELLRGDH

Similarity

Belongs to the nuclear hormone receptor family.

Uniprot

O96041   H9JEG7   A0A2H1WBZ8   A0A2W1BQP5   A0A3S2LGD2   A0A2A4K6H4   + More
A0A212FLD1   A0A194QM90   A0A194PQ55   A0A182UIK0   A0A182GP53   A0A1B6HNN8   A0A1B6MIJ8   A0A1B6F5Y0   A0A1S4H106   A0A1W4WWF8   A0A1Q3F3U4   A0A1Q3F3U7   A0A1S4H1R5   G8Z9Y8   A0A2H8TI65   D2A6H1   A0A1Y1L3R0   J9K0T6   A0A2S2PA12   A0A2M4BL49   A0A2S2Q9G4   A0A182QPF0   A0A182MLA4   A0A182L6Q8   A0A2M4BK44   A0A2M4ADE5   A0A182UXK3   A0A182GLJ0   A0A182GKK1   A0A182YFW1   A0A182VUQ4   A0A2M3Z672   W5J5Q5   A0A182HG72   A0A1S4EYC9   Q7QGB9   Q17LN1   A0A182P2S0   A0A1Q3F3N6   A0A1Q3F3X0   A0A182XDK5   A0A182RG74   A0A0C9R5H7   B0WAZ1   A0A182NEN2   A0A2M4BFC9   A0A2M4CVP5   A0A0T6B6T1   A0A2M4A7C2   A0A182F1V5   A0A2J7R1A4   A0A084VLW8   A0A2J7R1B8   A0A1B0DH33   A0A067R992   A0A2M4A873   A0A0V0G7N3   A0A224XL16   A0A182IXG7   A0A023F481   A0A069DWE2   A0A1B6DMQ3   T1HFZ6   A0A1J1I9C9   E0VMS4   A0A2Z2XT94   A0A2R7W7P1   E9J400   A0A0P4W677   A0A0L7R3C0   A0A195D3S7   E2BMH6   A0A2A3E9R0   A0A195EQJ4   A0A310SB35   A0A151XB37   A0A336K8C1   K7IWC6   F4WKA7   A0A195BS21   A0A026WUY5   A0A195DHV7   A0A158NQJ9   A0A232FK25   A0A0J7L4X9   A0A3L8E4L0   T1PB10   E9H1N6   E1ZXF8   A0A0P4WEM0   A0A0K8T693   A0A0K8T695   A0A2P8YJG0   A0A1A9X064  

Pubmed

19121390    28756777    22118469    26354079    26483478    12364791    + More
18362917    19820115    28004739    20966253    25244985    20920257    23761445    17510324    24438588    24845553    25474469    26334808    20566863    21282665    20798317    20075255    21719571    24508170    21347285    28648823    30249741    21292972    26823975    29403074   

EMBL

AB005660    BAA34123.1    BABH01003065    BABH01003066    ODYU01007583    SOQ50476.1    + More
KZ150012    PZC75060.1    RSAL01000014    RVE53238.1    NWSH01000128    PCG79272.1    AGBW02007796    OWR54555.1    KQ461195    KPJ06637.1    KQ459596    KPI95447.1    JXUM01003132    KQ560153    KXJ84149.1    GECU01031409    JAS76297.1    GEBQ01004187    JAT35790.1    GECZ01024149    JAS45620.1    AAAB01008835    GFDL01012809    JAV22236.1    GFDL01012815    JAV22230.1    GU479987    ADK46871.1    GFXV01001153    MBW12958.1    KQ971348    EFA05671.1    GEZM01071539    GEZM01071538    JAV65717.1    ABLF02024872    ABLF02024873    GGMR01013631    MBY26250.1    GGFJ01004540    MBW53681.1    GGMS01005161    MBY74364.1    AXCN02000847    AXCM01000060    GGFJ01004284    MBW53425.1    GGFK01005493    MBW38814.1    JXUM01072215    KQ562708    KXJ75294.1    JXUM01001078    JXUM01001079    GGFM01003268    MBW24019.1    ADMH02002158    ETN58200.1    APCN01004189    EAA05800.4    CH477214    EAT47581.1    GFDL01012898    JAV22147.1    GFDL01012791    JAV22254.1    GBYB01008032    JAG77799.1    DS231876    EDS41949.1    GGFJ01002586    MBW51727.1    GGFL01005234    MBW69412.1    LJIG01009579    KRT82797.1    GGFK01003358    MBW36679.1    NEVH01008208    PNF34620.1    ATLV01014570    KE524975    KFB38962.1    PNF34622.1    AJVK01015319    AJVK01015320    KK852804    KDR16159.1    GGFK01003507    MBW36828.1    GECL01002110    JAP04014.1    GFTR01007705    JAW08721.1    GBBI01002888    JAC15824.1    GBGD01000723    JAC88166.1    GEDC01017966    GEDC01010345    JAS19332.1    JAS26953.1    ACPB03006526    CVRI01000044    CRK96819.1    DS235324    EEB14680.1    KY817190    ATX63078.1    KK854423    PTY15744.1    GL768069    EFZ12441.1    GDRN01068968    GDRN01068966    JAI64117.1    KQ414663    KOC65370.1    KQ976885    KYN07547.1    GL449233    EFN83085.1    KZ288311    PBC28513.1    KQ982021    KYN30550.1    KQ761976    OAD56427.1    KQ982335    KYQ57508.1    UFQS01000121    UFQT01000121    SSX00062.1    SSX20442.1    GL888199    EGI65331.1    KQ976419    KYM89309.1    KK107087    EZA59860.1    KQ980824    KYN12483.1    ADTU01023357    NNAY01000110    OXU30890.1    LBMM01000709    KMQ97676.1    QOIP01000001    RLU26918.1    KA645335    AFP59964.1    GL732583    EFX74471.1    GL435038    EFN74135.1    GDRN01068967    JAI64118.1    GBRD01004779    GBRD01004778    GBRD01004776    GBRD01004774    GDHC01017357    JAG61042.1    JAQ01272.1    GBRD01004780    GBRD01004777    GBRD01004775    GBRD01004773    GDHC01017583    JAG61044.1    JAQ01046.1    PYGN01000551    PSN44390.1   

Proteomes

UP000005204    UP000283053    UP000218220    UP000007151    UP000053240    UP000053268    + More
UP000075902    UP000069940    UP000249989    UP000192223    UP000007266    UP000007819    UP000075886    UP000075883    UP000075882    UP000075903    UP000076408    UP000075920    UP000000673    UP000075840    UP000007062    UP000008820    UP000075885    UP000076407    UP000075900    UP000002320    UP000075884    UP000069272    UP000235965    UP000030765    UP000092462    UP000027135    UP000075880    UP000015103    UP000183832    UP000009046    UP000053825    UP000078542    UP000008237    UP000242457    UP000078541    UP000075809    UP000002358    UP000007755    UP000078540    UP000053097    UP000078492    UP000005205    UP000215335    UP000036403    UP000279307    UP000000305    UP000000311    UP000245037    UP000091820   

PRIDE

O96041    H9JEG7   

Pfam

PF00105   zf-C4        + More
PF00104   Hormone_recep

Interpro

IPR013088   Znf_NHR/GATA        + More
IPR001628   Znf_hrmn_rcpt       
IPR000536   Nucl_hrmn_rcpt_lig-bd       
IPR035500   NHR-like_dom_sf       
IPR016355   NR5_fam       
IPR001723   Nuclear_hrmn_rcpt       
IPR001728   ThyrH_rcpt       
IPR018247   EF_Hand_1_Ca_BS       

SUPFAM

SSF48508   SSF48508       

Gene 3D

1.10.565.10     3.30.50.10    

ProteinModelPortal

O96041   H9JEG7   A0A2H1WBZ8   A0A2W1BQP5   A0A3S2LGD2   A0A2A4K6H4   + More
A0A212FLD1   A0A194QM90   A0A194PQ55   A0A182UIK0   A0A182GP53   A0A1B6HNN8   A0A1B6MIJ8   A0A1B6F5Y0   A0A1S4H106   A0A1W4WWF8   A0A1Q3F3U4   A0A1Q3F3U7   A0A1S4H1R5   G8Z9Y8   A0A2H8TI65   D2A6H1   A0A1Y1L3R0   J9K0T6   A0A2S2PA12   A0A2M4BL49   A0A2S2Q9G4   A0A182QPF0   A0A182MLA4   A0A182L6Q8   A0A2M4BK44   A0A2M4ADE5   A0A182UXK3   A0A182GLJ0   A0A182GKK1   A0A182YFW1   A0A182VUQ4   A0A2M3Z672   W5J5Q5   A0A182HG72   A0A1S4EYC9   Q7QGB9   Q17LN1   A0A182P2S0   A0A1Q3F3N6   A0A1Q3F3X0   A0A182XDK5   A0A182RG74   A0A0C9R5H7   B0WAZ1   A0A182NEN2   A0A2M4BFC9   A0A2M4CVP5   A0A0T6B6T1   A0A2M4A7C2   A0A182F1V5   A0A2J7R1A4   A0A084VLW8   A0A2J7R1B8   A0A1B0DH33   A0A067R992   A0A2M4A873   A0A0V0G7N3   A0A224XL16   A0A182IXG7   A0A023F481   A0A069DWE2   A0A1B6DMQ3   T1HFZ6   A0A1J1I9C9   E0VMS4   A0A2Z2XT94   A0A2R7W7P1   E9J400   A0A0P4W677   A0A0L7R3C0   A0A195D3S7   E2BMH6   A0A2A3E9R0   A0A195EQJ4   A0A310SB35   A0A151XB37   A0A336K8C1   K7IWC6   F4WKA7   A0A195BS21   A0A026WUY5   A0A195DHV7   A0A158NQJ9   A0A232FK25   A0A0J7L4X9   A0A3L8E4L0   T1PB10   E9H1N6   E1ZXF8   A0A0P4WEM0   A0A0K8T693   A0A0K8T695   A0A2P8YJG0   A0A1A9X064  

PDB

3CJW     E-value=3.26906e-16,     Score=203

KEGG

692364    K08705 nuclear receptor subfamily 5 group A member 3 | (RefSeq) Hr39; nuclear hormone receptor FTZ-F

GO

GO:0003700   GO:0008270   GO:0043565   GO:0003707   GO:0005634   GO:0046872   GO:0003677   GO:0006355   GO:0009888   GO:0045944   GO:0009755   GO:0003682   GO:0090575   GO:0000976   GO:0004879   GO:0043401   GO:0007275   GO:0050793   GO:0003676   GO:0016876   GO:0043039  

PANTHER

PTHR24086  

Subcellular location

Nucleus  

Length:

180

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.0348

Exp number, first 60 AAs:

0.03284

Total prob of N-in:

0.08330

outside

1  -  180

 

 

Pi

129.468194

Theta

143.369186

Tajima's D

-0.339075

CLR

5.956896

CSRT

0.275386230688466

Interpretation

Uncertain