Silkworm Genome Informatics Database

Gene

KWMTBOMO08718

Pre Gene Modal

BGIBMGA007917

Annotation

PREDICTED:_homeobox_protein_orthopedia-like?_partial_[Bombyx_mori]

Location

Bomo_Chr15(-):3464294-3465364 View in EpiBrowser

Transcription factor

Homeobox

Location in the cell

Nuclear Reliability : 4.542

CDS

ATGCGACGGAAATACGAAGAAGGAAAAAATGGAAAAGAGAAGGAGTTGCAGAAAGAATGCGATGAAAATAAGGACGGGAAATCAGACGAGAGGAAAAAGCCGAGAAGAAACCGAACCACCTTTACTAGCCAGCAATTGGCTGCCTTAGAAAAAGTGTTTGAAAAAACGCATTATCCCGATGCTTTTGTTAGAGAAGATTTAGCAGCGAGAGTCAGTTTAACAGAAGCAAGAGTGCAGGTGTGGTTTCAGAACCGTCGTGCGAAATTCCGAAGAAACGAAAGATCAGCCCTCTCAAATCACCGGAGTTCAACCAGTCAGAATTCACCAGAGCCTATGGCTGTTCCAATCGGCATTCCTCATCAACCAGACCCGAGACAAGAATTCGCCCGAAACAAAGAACCGTGGCTACATCATTTTCAAACTAACAATTTGAATTTAAATTTAGGACTGCCAATAACGAATACAGGACTGTATCAAAACGATTATTCTTTGATGATGCAGAACGTTGGTAACAGACCATACGTGCCCAACACAAATGGGTTTATGGGCCAAAGTGTTGTAGGTTATAGCGGAGGCGAAAATGCATACAGTTCATGCGGTATTATCGGGGGCTATAATGGATCGTTGTCTTCATCGCACAGTTCATACAATTTGAATTTAAGATTGAGACCACACGATTTCAGCATAAATAATTTGACTTTGTGA

Protein

MRRKYEEGKNGKEKELQKECDENKDGKSDERKKPRRNRTTFTSQQLAALEKVFEKTHYPDAFVREDLAARVSLTEARVQVWFQNRRAKFRRNERSALSNHRSSTSQNSPEPMAVPIGIPHQPDPRQEFARNKEPWLHHFQTNNLNLNLGLPITNTGLYQNDYSLMMQNVGNRPYVPNTNGFMGQSVVGYSGGENAYSSCGIIGGYNGSLSSSHSSYNLNLRLRPHDFSINNLTL

Uniprot

H9JEH0 A0A2A4K5T0 A0A2W1BTJ2 A0A194PR58 A0A194QMR0 A0A3S2PJH3 + More
A0A2H1WGJ7 A0A212F639 A0A0L7LK22

Pubmed

19121390 28756777 26354079 22118469 26227816

EMBL

BABH01003076 NWSH01000128 PCG79278.1 KZ150012 PZC75053.1 KQ459596 + More
KPI95443.1 KQ461195 KPJ06634.1 RSAL01000014 RVE53232.1 ODYU01008518 SOQ52188.1 AGBW02010081 OWR49196.1 JTDY01000843 KOB75694.1

Proteomes

UP000005204 UP000218220 UP000053268 UP000053240 UP000283053 UP000007151 + More
UP000037510

PRIDE

H9JEH0

Pfam

PF00046 Homeodomain

Interpro

IPR017970   Homeobox_CS        + More
IPR001356   Homeobox_dom
IPR009057   Homeobox-like_sf

SUPFAM

SSF46689 SSF46689

CDD

cd00086 homeodomain

ProteinModelPortal

H9JEH0 A0A2A4K5T0 A0A2W1BTJ2 A0A194PR58 A0A194QMR0 A0A3S2PJH3 + More
A0A2H1WGJ7 A0A212F639 A0A0L7LK22

PDB

2M0C E-value=2.62699e-18, Score=223

KEGG

101740508 K09329 paired mesoderm homeobox protein | (RefSeq) homeobox protein orthopedia-like

GO

GO:0003700 GO:0043565 GO:0006366 GO:0005634 GO:0003677 GO:0006355 GO:0046872 GO:0007219 GO:0007275 GO:0050793 GO:0003676 GO:0016876 GO:0043039

Subcellular location

Nucleus

Length:

234

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.05106

Exp number, first 60 AAs:

0

Total prob of N-in:

0.32776

outside

1 - 234

Pi

73.073705

Theta

187.147498

Tajima's D

-1.896482

CLR

64.617714

CSRT

0.0208489575521224

Interpretation

Uncertain

Sequence

Summary

Ontologies

Topology

Population Genetic Test Statistics