SGID Silkworm Genome Informatics Database
Gene
KWMTBOMO08713
Annotation
unnamed_protein_product_[Bombyx_mori]
Location in the cell
Mitochondrial   Reliability : 2.348
 

Sequence

CDS
ATGGAGTTATCTGCTGCAAGTCTCTTAACACAGCTTATGATACGTGTCTCGACTCAATTGTTGTCCCATATTACCATAAAGCAACACATATGCTGGTCAGACAGTACCATTGTCCTAGCATGGCTAAACACACCTCCTCATAGACTTCAGGTCTTTGAAGCTAACAGGGTTGCCAAGATAACATCCAATCCAATCACCTCCACATGGAAACATGTTCCTACAAACCTGAACCCTGCAGACTGTGCGAGCAGGGGAATGTCTGCCCAGTCACTATCGGCTCATGATCTTTGGTGGTCTCCTAGCTGGCTGAAGGAGCCTCCTGACACCTGGCCCAAAATGCCTCCTGCTCTAGGCCACCATGCATTACCAGGTCTGAAGCCCAAGAAAGTACCAGCTCATATAGCAGTTCCTGACCTCGACCTTGACTTGCTTACTCGATTCAGTTCTCTCGACAAGCTCGTTGGAGTGACAGCTTGCATAAAACGCTTTATTTTCAATTGTAGACACAACTCAACTGATAGGCGCTCTGGTCCCTTGACAGTTGGAGAACGTAGAGATGCTCTGTTATTCTGGGTTCGCTCTGTTCAACACAATGAGTTTGCGGAAGATATTTACCGTCTTCAGGCAGGCAAGATTTGTACCGTTCGACTTCAGCGTCTTTCACCCTTGATGAAAGATGATCTCTTGAGAGTTGGTGGTCGCCTCACTCATGCGCCAATAAGATACGATGCTCAGCATCCTCTCGTTCTGCCCAGCTCTAGCCCACTAGTTGATCTCATCGTAGACCACTATCACAGAATAAACTGTCATCCTGGGGCTGACACATTACACGCTATCCTCCGTCAGCAGTTCTGGATACTCTCAGCACGTCGTGTCATCAGGCATCGCGTGTACAAATGCATTAGATGTTTCCGATATCGCGCTCAGGCCAGAGCTCCGTTGATGGCTGATTTGCCCGCAGACAGGGTCACACCCCAGCCACTCATCCAAGCTCTCTCTCAGCGTTTTTGGACTCTGTGGACCAAATCCTGTCTCCATACCCTCCAAACCCGCTCCAAATGGCTTTCCACATCCTCACCTCCTCATGTTGGAGAGCTCGTCCTCATCAAAGAGGACAATCAGCCCCCGCTGCAATGGAAACTTGGAAGGATTATCCGCACGTTACCCGGCAAGGATGGAGTGATCAGAGTCGTGGATTTGGACACGAAGCATGGAAGTCTGCGGAGACCTGTGTTCAAGTTAGCCAGGTTGCCGCTGGATTCAGCACATGAAGAAGTTCAGCCCCGGCCGCCCCAGGATTAG
Protein
MELSAASLLTQLMIRVSTQLLSHITIKQHICWSDSTIVLAWLNTPPHRLQVFEANRVAKITSNPITSTWKHVPTNLNPADCASRGMSAQSLSAHDLWWSPSWLKEPPDTWPKMPPALGHHALPGLKPKKVPAHIAVPDLDLDLLTRFSSLDKLVGVTACIKRFIFNCRHNSTDRRSGPLTVGERRDALLFWVRSVQHNEFAEDIYRLQAGKICTVRLQRLSPLMKDDLLRVGGRLTHAPIRYDAQHPLVLPSSSPLVDLIVDHYHRINCHPGADTLHAILRQQFWILSARRVIRHRVYKCIRCFRYRAQARAPLMADLPADRVTPQPLIQALSQRFWTLWTKSCLHTLQTRSKWLSTSSPPHVGELVLIKEDNQPPLQWKLGRIIRTLPGKDGVIRVVDLDTKHGSLRRPVFKLARLPLDSAHEEVQPRPPQD

Summary

EMBL
AB012907    BAA33577.1    AB012906    BAA33576.1    DS497760    EFA13221.1    + More
GEBQ01018232    JAT21745.1    GEBQ01015599    JAT24378.1    GECZ01006169    JAS63600.1    GECU01010337    JAS97369.1    GEBQ01022991    GEBQ01006185    JAT16986.1    JAT33792.1    GEBQ01007199    GEBQ01000222    JAT32778.1    JAT39755.1    GBHO01021103    GBHO01021101    JAG22501.1    JAG22503.1    ABLF02052963    GGMR01000737    MBY13356.1    GBHO01008418    GBHO01008416    JAG35186.1    JAG35188.1    GALX01004947    JAB63519.1    GBHO01004194    JAG39410.1    GEBQ01005223    JAT34754.1    GBHO01004196    JAG39408.1    ABLF02008594    GBHO01003578    JAG40026.1    GEBQ01029803    JAT10174.1    GDHC01006469    JAQ12160.1    GBHO01030122    GBHO01030121    GBHO01030120    GBHO01030116    JAG13482.1    JAG13483.1    JAG13484.1    JAG13488.1    GBHO01034065    GBHO01034061    JAG09539.1    JAG09543.1    GBHO01019177    GBHO01003185    JAG24427.1    JAG40419.1    GDHC01018560    JAQ00069.1    ABLF02006304    ABLF02036268    GDHC01006567    JAQ12062.1    GBHO01023090    JAG20514.1    GBHO01027036    GBHO01010996    GBHO01010995    GBHO01010993    GBHO01010991    JAG16568.1    JAG32608.1    JAG32609.1    JAG32611.1    JAG32613.1    GBRD01007977    JAG57844.1    GBHO01006408    JAG37196.1    ABLF02017373    GBHO01044317    GBHO01044315    JAF99286.1    JAF99288.1    GBHO01044316    JAF99287.1    ABLF02041863    MCIT02012214    PHT96336.1    ABLF02035110    ABLF02067347    GGMR01013370    MBY25989.1    GALX01005107    JAB63359.1    GDHC01011948    JAQ06681.1    MCIT02006707    PHT96417.1    ABLF02030854    GBHO01038469    JAG05135.1    GGMR01017890    MBY30509.1    GGMR01015135    MBY27754.1    LBMM01009964    KMQ87756.1    KQ973442    KXZ75531.1    GEZM01054765    JAV73413.1    GGMR01002421    MBY15040.1    GEZM01072348    JAV65549.1    GFTR01008874    JAW07552.1    LBMM01009551    KMQ88039.1    GBBI01004409    JAC14303.1    GBBI01004407    JAC14305.1    QOIP01000009    RLU19130.1    GBHO01010487    GBHO01010485    JAG33117.1    JAG33119.1    GBHO01019080    JAG24524.1    GBHO01009080    JAG34524.1    ABLF02008636    ABLF02065931    GBHO01010489    GBHO01010484    JAG33115.1    JAG33120.1    JTDY01005490    KOB66948.1    LBMM01012392    KMQ86241.1    GBHO01034064    JAG09540.1    ABLF02008635    ABLF02023121    ABLF02065930    LNIX01000063    OXA37199.1    LBMM01018894    KMQ83668.1    GBHO01031928    GBHO01031926    JAG11676.1    JAG11678.1    ABLF02017056    LNIX01000016    OXA46198.1    LNIX01000069    OXA36894.1    GBHO01045636    GBHO01045635    JAF97967.1    JAF97968.1    LNIX01000007    OXA51795.1    GAIX01013989    JAA78571.1    RLU18850.1    GFTR01008866    JAW07560.1    ABLF02036131    ABLF02041527    ABLF02064049    ABLF02028666    ABLF02066713    GDHC01014057    JAQ04572.1    GGMS01016125    MBY85328.1    GBRD01004944    GBRD01004943    GBRD01004942    JAG60878.1    GBHO01033788    JAG09816.1    GBYB01004444    JAG74211.1   
Pfam
PF17921   Integrase_H2C2        + More
PF05380   Peptidase_A17
PF18701   DUF5641
PF00665   rve
PF03564   DUF1759
PF05585   DUF1758
PF00078   RVT_1
Interpro
IPR008042   Retrotrans_Pao        + More
IPR041588   Integrase_H2C2       
IPR040676   DUF5641       
IPR036397   RNaseH_sf       
IPR012337   RNaseH-like_sf       
IPR001584   Integrase_cat-core       
IPR005312   DUF1759       
IPR008737   Peptidase_asp_put       
IPR021109   Peptidase_aspartic_dom_sf       
IPR001969   Aspartic_peptidase_AS       
IPR000477   RT_dom       
IPR001995   Peptidase_A2_cat       
IPR001878   Znf_CCHC       
SUPFAM
SSF53098   SSF53098        + More
SSF50630   SSF50630       
Gene 3D

Ontologies

Topology

Length:
433
Number of predicted TMHs:
0
Exp number of AAs in TMHs:
0.01227
Exp number, first 60 AAs:
0.01143
Total prob of N-in:
0.00158
outside
1  -  433
 
 

Population Genetic Test Statistics

Pi
0
Theta
0
Tajima's D
0
CLR
0.170536
CSRT
0
Interpretation
Uncertain

Multiple alignment of Orthologues

 
 

Gene Tree

 
 
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