SGID Silkworm Genome Informatics Database
Gene
KWMTBOMO08707  Validated by peptides from experiments
Pre Gene Modal
BGIBMGA007665
Annotation
putative_elongator_complex_protein_3_[Papilio_machaon]
Full name
Elongator complex protein 3      
Location in the cell
Mitochondrial   Reliability : 2.667
 

Sequence

CDS
ATGATATATCGCTTGTCCAGCAAAGGAAAACGACATTTATTCCTAGGATTTCTGCCCCGTCTGAACGCACACTTCGGCCAAAGATATACCGTGTCAGCTACGGAAGCACTCTCCGAGTTTCAGAGGTTGCAACTGAACCAGAGGGCAGCTAGGAACCAACTGGAGAGGGTCGTCAGTCTTCAGGCCGGAAAAGGACAGCCCTGGGATTTGGTTGACAGATTCTCTGCTACGGCGGAGTTTAAGTTGCCCTTGGTCGTAGTACGACCGGAATGTGCGGGTATACTTCGTGATCTACCAATGGACGAGCCGAAACTGTCTCCAGCATCGCATTCCGTCAGTCCTTACTTTATGGAAAATGATGATCCAGACAAATTCATAAAGAAAGAGTTATTGGTCGCTCATCGTCAGGGCAAAGATGTTAACCTCAACAAGATGAAAACGCGGATATCTTCCAAATACGGTCTCGGCACGTCTCCGCGACTAGTGGACATCATTGCTGCTGTACCAACAGACGCCAAAAAGATTTTGCTACCGAAATTAAAAGCTAAACCTATTCGTACAGCGTCTGGTATCGCCGTTGTTGCGGTTATGTGTAAACCTCACAGATGCCCACACATAAACTTTACCGGGAACATTTGTGTATATTGTCCCGGAGGTCCGGATTCGGATTTTGAATATTCAACTCAAAGTTATACTGGATACGAGCCCACATCCATGAGAGCGATCCGAGCTCGTTACAATCCTTACTTGCAGACTCGTCATAGAGTGGAACAGTTGAAACAACTTGGTCATAGTGTGGACAAGGTAGAGTTCATTGTGATGGGAGGAACGTTTATGAGTTTGCCTGAAGACTATAGAGATTACTTTATTAGGAATCTTCACGATGCTCTGTCAGGCCACACTTCAACTTGTGTAGCTGAAGCTGTGAAGTACTCTGAGAAAGCAAAAACGAAATGCATTGGGATTACAATTGAGACAAGGCCTGATTATTGTCAGCAAAGACATATGAGTGATATGCTTAATTATGGATGCACAAGGCTTGAAATTGGTGTACAATCAGTTTATGAAGATATAGCCCGGGACACAAATAGGGGACATACAGTGAAGGCGGTATGCGAGAACTTTAGTATGGCTAAAGATGCTGGTTACAAGATTGTCGCCCACATGATGCCAGATCTACCAAACGTTGATTTTGAAAGGGATGTAGAACAATTCATTGAGTTCTTTGAGAACCCTGCATTCCGAGCTGATGGACTTAAAATTTACCCAACACTGGTAATAAGAGGTACCGGTTTATATGAATTATGGAAGACCGGGAGATACAGGAGTTATCCCCCTTCAACTTTAGTCGATCTAATTGCGAAGATATTAGCTCTAGTGCCACCATGGACTAGGGTGTACAGAGTGCAAAGAGACATTCCCATGCCTTTGGTATCGTCAGGAGTCGAGCATGGTAATCTTAGAGAGCTAGCTTTGGCACGAATGGCAGACTTGGGTACTGATTGCAGAGATGTGAGGACGAGAGAGGTTGGGATACAGGAGATACACAACCGAGTCAGACCGTATGAGGTTGAGCTTATAAGACGAGACTACGTAGCCAACGGTGGTTGGGAGACGTTTTTAGCTTACGAAGACCCGAATCAAGATATCTTAGTAGGCTTGTTGCGGCTGAGAAAGTGTGCCGGTCAAACTTACAGGCCGGAATTAAAGGCCAAACCTAATTCGAATTTTGTACAGTGCAGTATTGTAAGGGAGTTGCATGTTTATGGCTCTGTTGTACCAGTGAATGCCCGAGATCCAACCAAGTTTCAGCATCAAGGCTTTGGCATGTTGCTAATGGAGGAAGCCGAGAGAATCGCGCGGGAAGAGCATGGTTCCGACAAAATGGCCGTTATTTCGGGAGTCGGAACGAGGAATTATTATGCTAAAATTGGTTACCATCTCGAAGGGCCGTACATGGTCAAGATGCTTGCACCTGATCCTCCATTATCCATAAATCCCACTGAGATCTACCATAAGCACGTCGGTATGTTGCCCAACTACGCAGGTCACGTGCCAGGCTGCGTCTTCAGATTCGGAAAAACCTACGGCAACGACACGAGAGACGCTAAGCGTTGGCTCCGAGGAGACTTCACATCTTAG
Protein
MIYRLSSKGKRHLFLGFLPRLNAHFGQRYTVSATEALSEFQRLQLNQRAARNQLERVVSLQAGKGQPWDLVDRFSATAEFKLPLVVVRPECAGILRDLPMDEPKLSPASHSVSPYFMENDDPDKFIKKELLVAHRQGKDVNLNKMKTRISSKYGLGTSPRLVDIIAAVPTDAKKILLPKLKAKPIRTASGIAVVAVMCKPHRCPHINFTGNICVYCPGGPDSDFEYSTQSYTGYEPTSMRAIRARYNPYLQTRHRVEQLKQLGHSVDKVEFIVMGGTFMSLPEDYRDYFIRNLHDALSGHTSTCVAEAVKYSEKAKTKCIGITIETRPDYCQQRHMSDMLNYGCTRLEIGVQSVYEDIARDTNRGHTVKAVCENFSMAKDAGYKIVAHMMPDLPNVDFERDVEQFIEFFENPAFRADGLKIYPTLVIRGTGLYELWKTGRYRSYPPSTLVDLIAKILALVPPWTRVYRVQRDIPMPLVSSGVEHGNLRELALARMADLGTDCRDVRTREVGIQEIHNRVRPYEVELIRRDYVANGGWETFLAYEDPNQDILVGLLRLRKCAGQTYRPELKAKPNSNFVQCSIVRELHVYGSVVPVNARDPTKFQHQGFGMLLMEEAERIAREEHGSDKMAVISGVGTRNYYAKIGYHLEGPYMVKMLAPDPPLSINPTEIYHKHVGMLPNYAGHVPGCVFRFGKTYGNDTRDAKRWLRGDFTS

Summary

Description
Catalytic histone acetyltransferase subunit of the RNA polymerase II elongator complex, which is a component of the RNA polymerase II (Pol II) holoenzyme and is involved in transcriptional elongation.
Catalytic histone acetyltransferase subunit of the RNA polymerase II elongator complex, which is a component of the RNA polymerase II (Pol II) holoenzyme and is involved in transcriptional elongation. Elongator may play a role in chromatin remodeling. Involved in acetylation of alpha-tubulin (By similarity). May also have a methyltransferase activity (By similarity).
Catalytic Activity
acetyl-CoA + L-lysyl-[protein] = CoA + H(+) + N(6)-acetyl-L-lysyl-[protein]
Cofactor
[4Fe-4S] cluster
Subunit
Component of the RNA polymerase II elongator complex (Elongator). Elongator associates with the C-terminal domain (CTD) of Pol II largest subunit.
Component of the RNA polymerase II elongator complex (Elongator). Elongator associates with the C-terminal domain (CTD) of Pol II largest subunit (By similarity).
Similarity
Belongs to the ELP3 family.
Belongs to the G-protein coupled receptor 1 family.
Keywords
Acyltransferase   Complete proteome   Iron   Iron-sulfur   Metal-binding   Nucleus   Reference proteome   S-adenosyl-L-methionine   Transcription   Transcription regulation   Transferase  
Feature
chain  Elongator complex protein 3
EC Number
2.3.1.48
EMBL
BABH01003105    ODYU01002164    SOQ39307.1    KQ460473    KPJ14539.1    NWSH01000550    + More
PCG75709.1    PCG75708.1    KQ459596    KPI95435.1    KK852595    KDR20605.1    GANO01001531    JAB58340.1    ATLV01018225    KE525226    KFB42833.1    NEVH01016346    PNF25287.1    GGFK01005992    MBW39313.1    GBGD01001057    JAC87832.1    KZ288226    PBC31910.1    CP012523    ALC38559.1    GAPW01000823    JAC12775.1    GECL01001089    JAP05035.1    ADMH02002027    ETN59877.1    CM000157    EDW87638.1    GBBI01001992    JAC16720.1    CH954177    EDV57732.1    JXUM01008636    JXUM01008637    KQ560265    KXJ83469.1    GDKW01001751    JAI54844.1    GEDC01008736    JAS28562.1    CH479187    EDW39619.1    KQ434936    KZC11929.1    CH379060    EAL34046.1    CH933807    EDW12963.1    GECZ01027874    JAS41895.1    UFQT01000094    SSX19648.1    JRES01001441    KNC22917.1    AJ721063    KL473960    KFV19923.1    KK645728    KFP98794.1    KB202719    ESO88303.1    KK734781    KFR10883.1    KL870418    KGL88317.1    KL218791    KFP08327.1    KL410766    KFQ99260.1    KL217139    KFV73948.1    AADN04000290    KK501648    KFP16849.1    KL226234    KFM10322.1    LMAW01000703    KQK85961.1    QCYY01002519    ROT69787.1    AKHW03001328    KYO42897.1    KL447886    KFO78316.1    KL224801    KFW64137.1    AGCU01043795    AGCU01043796    AGCU01043797    AGCU01043798    AGCU01043799    AGCU01043800    AGCU01043801    AGCU01043802    AGCU01043803    AGCU01043804    CCAG010013076    GBHO01020734    JAG22870.1    KQ414632    KOC67154.1    BEZZ01000449    GCC32624.1    AAWZ02029754    AAWZ02029755    AAWZ02029756    AAWZ02029757    AAWZ02029758    AAWZ02029759    AAWZ02029760    JXJN01012140    JXJN01024742    JW867796    AFP00314.1    CM004474    OCT81438.1    AYCK01012083    AYCK01012084    AYCK01012085    BC088956    NEDP02001046    OWF54410.1    DS235100    EEB11926.1    KC110654    AFX63157.1    GBKC01001106    JAG44964.1    CM012460    RVE55998.1    OUUW01000004    SPP79877.1    CVRI01000054    CRL00863.1    CH477389    EAT42013.1    APCN01000797    CH940649    EDW64910.1   
Pfam
PF10629   DUF2475        + More
PF04055   Radical_SAM
PF00583   Acetyltransf_1
PF16199   Radical_SAM_C
PF00001   7tm_1
PF03045   DAN
Interpro
IPR006638   Elp3/MiaB/NifB        + More
IPR032432   Radical_SAM_C       
IPR000182   GNAT_dom       
IPR034687   ELP3-like       
IPR016181   Acyl_CoA_acyltransferase       
IPR039661   ELP3       
IPR023404   rSAM_horseshoe       
IPR018902   UPF0573/UPF0605       
IPR007197   rSAM       
IPR000276   GPCR_Rhodpsn       
IPR017452   GPCR_Rhodpsn_7TM       
IPR004133   DAN       
IPR029034   Cystine-knot_cytokine       
SUPFAM
SSF55729   SSF55729       
Gene 3D
PDB
6IAZ     E-value=7.64097e-115,     Score=1061

Ontologies

Topology

Subcellular location
Nucleus  
Length:
713
Number of predicted TMHs:
0
Exp number of AAs in TMHs:
0.03016
Exp number, first 60 AAs:
0.01319
Total prob of N-in:
0.00127
outside
1  -  713
 
 

Population Genetic Test Statistics

Pi
348.330448
Theta
208.930907
Tajima's D
2.585694
CLR
0.522116
CSRT
0.951952402379881
Interpretation
Uncertain
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