Gene

KWMTBOMO08699  Validated by peptides from experiments

Pre Gene Modal

BGIBMGA007661

Annotation

ribosomal_protein_L7A_[Bombyx_mori]

Location

Bomo_Chr15(+):2869116-2873720      View in EpiBrowser

Full name

60S ribosomal protein L7a      

Location in the cell

Cytoplasmic   Reliability : 1.431 Mitochondrial   Reliability : 2.096

CDS

ATGGTGCAGAAGAAGCCTAAGAAGAAGGTAGGGAAGAAAGTAGCCGCCGCCCCATTGGTGGTCAAAAAGGTTGAGCCCAAGAAGATCGTGAATCCTCTCTTCGAGAAGAGGCCAAAGAACTTTGCTATTGGTCAGGGCATTCAGCCAACTCGTGACTTGTCCAGATTTGTAAGATGGCCCAAGTATATCCGCATCCAGCGCCAGAAGGCTGTACTTCAGCGTCGTCTGAAAGTGCCCCCTCCGATCAACCAATTTACCCAGACACTGGACAAGACTACAGCTAAGGGCCTTTTCAAGATTTTGGAGAAATACAGGCCTGAGACTGAAGCAGCCAGGAAAGAGAGGCTGAGGAAAGCTGCTGAAGCTAAGGTTGCCAAGAAAGATGAGCCTCCACCAAAGAGGCCCAACACCATCCGATCCGGCACAAACACAGTCACCAAGCTGGTCGAGAAGAAGAAGGCGCAGCTTGTGGTCATCGCTCATGATGTTGATCCTATTGAGCTGGTTCTCTTCCTGCCAGCGTTATGCCGTAAAATGGGTGTACCATACTGCATTGTCAAGGGCAAGTCCCGCCTCGGTGCACTTGTACACCGCAAGACATGCACATGCTTAGCTCTAACAAATGTGGAGTCTGGTGACCGCGCCTCCTTCTCGAAGGTCGTGGAAGCCATCAAGACGAACTTCAACGAGCGCTACGAGGAGCTCCGCAAGCACTGGGGCGGCGGCGTCCTCGGCAACAAGTCCAACGCCCGCATCGCTAAACTAGAGAAAGCTAAGGCGCGCGAGTTAGCGCAGAAACAGGGCTGA

Protein

MVQKKPKKKVGKKVAAAPLVVKKVEPKKIVNPLFEKRPKNFAIGQGIQPTRDLSRFVRWPKYIRIQRQKAVLQRRLKVPPPINQFTQTLDKTTAKGLFKILEKYRPETEAARKERLRKAAEAKVAKKDEPPPKRPNTIRSGTNTVTKLVEKKKAQLVVIAHDVDPIELVLFLPALCRKMGVPYCIVKGKSRLGALVHRKTCTCLALTNVESGDRASFSKVVEAIKTNFNERYEELRKHWGGGVLGNKSNARIAKLEKAKARELAQKQG

Similarity

Belongs to the eukaryotic ribosomal protein eL8 family.

Keywords

3D-structure   Complete proteome   Reference proteome   Ribonucleoprotein   Ribosomal protein  

Feature

chain  60S ribosomal protein L7a

Uniprot

Q5UAT3   A0A1E1WL93   A7KCX2   G0ZEG5   A0A212EWY1   D1LYP7   + More
A0A2A4J6E1   A0A437BIM5   A0A2H1WFE5   E7DZ47   A0A2W1BC86   A0A3G1T1E6   I4DLX6   A0A194RF45   I6P4Z9   I4DIC9   A0A194PRP6   A9LST0   R4V0R1   A0A067RS20   A0A1W4WH60   A0A0L7RG15   A0A2P8YQ52   A0A348G675   G8CV16   A0A2J7RM16   A0A232FH31   E2AAD7   Q56FL4   A0A310SC78   B6SI06   V9IKQ0   A0A088A266   A0A195CT23   A0A411G7M1   E9I8Z1   A0A0A1WNM0   D1M825   A0A0J7NQK1   A0A195E3I2   A0A1A9UYA7   A0A1B0AWZ2   A0A1A9Z9F7   D3TQZ6   A0A195F328   A0A158P1G6   A0A0L0BZW6   A0A026X2G5   A0A0X8NRF1   A0A2A3E9P2   A0A151X7B4   A0A1A9Y508   A0A0K8TVW4   A0A034WMI3   Q4GXL9   A0A1A9VZR4   Q4GXL8   A0A151I3B8   J3JUY3   A0A1D1ZGQ6   W8CB33   A0A1I8PFT9   A0A1L8EF06   A0A154PBM6   H6S4A4   T1P7Q1   A0A0M5JAY7   B4L6F0   A0A0K8TQ65   A0A0K8V124   Q4GXL6   A0A1Y1LSB3   F4WYI7   B4M825   A0A1L8EF72   V5GKN2   D6X3W3   Q4GXL7   B4GTB4   A0A3B0KVC9   A0A1B6MLZ6   A0A0M8ZS30   A0A1B6MVJ6   A0A1B6H3P7   D1FPH5   Q29J55   B3NXS9   A0A1W4VSC2   B4R5M2   X2JCS6   Q6XIQ0   P46223   A0A224XLR3   B3MZ48   B4JKK8   B4MTD8   A0A1J1IVS4   A0A069DR70   Q4GXM0   A0A171B7S8  

Pubmed

19121390    17603110    22118469    28756777    22651552    26354079    + More
23569222    24845553    29403074    22028913    29136191    28648823    20798317    18937034    21282665    25830018    20353571    21347285    26108605    24508170    30249741    25348373    22516182    23537049    24495485    22749169    25315136    17994087    26369729    28004739    21719571    18362917    19820115    20441151    15632085    18057021    10731132    12537568    12537572    12537573    12537574    16110336    17569856    17569867    26109357    26109356    14525923    17550304    7739520    12537569    23636399    26334808   

EMBL

BABH01003129    AY769275    AAV34817.1    GDQN01003428    JAT87626.1    EF207963    + More
ABS57440.1    JF265043    AEL28874.1    AGBW02011862    OWR46006.1    GU084321    ACY95354.1    NWSH01002685    PCG67687.1    RSAL01000051    RVE50209.1    ODYU01008319    SOQ51805.1    HQ424750    ADT80694.1    KZ150144    PZC72909.1    MG846940    AXY94792.1    AK402294    BAM18916.1    KQ460473    KPJ14551.1    JQ771356    AFD93387.1    AK401047    BAM17669.1    KQ459596    KPI95424.1    EU259814    ABX55885.1    KC632403    AGM32217.1    KK852460    KDR23535.1    KQ414601    KOC69676.1    PYGN01000438    PSN46387.1    FX985617    BBF97948.1    HQ385975    QKKF02006335    ADQ73876.1    RZF46362.1    NEVH01002577    PNF41877.1    NNAY01000231    OXU29830.1    GL438095    EFN69603.1    AY961486    AAX62388.1    KQ771508    OAD52536.1    EU952371    ACG24489.1    JR052524    AEY61713.1    KQ977305    KYN03672.1    MH366115    QBB01924.1    GL761667    EFZ22936.1    GBXI01014187    JAD00105.1    GU120449    ACY71299.1    LBMM01002506    KMQ94725.1    KQ979709    KYN19439.1    JXJN01004962    CCAG010020379    EZ423848    ADD20124.1    KQ981852    KYN34980.1    ADTU01006541    JRES01001179    KNC24764.1    KK107024    QOIP01000004    EZA62263.1    RLU24014.1    KC507330    AHB12453.1    KZ288311    PBC28447.1    KQ982450    KYQ56265.1    GDHF01033903    JAI18411.1    GAKP01003572    JAC55380.1    AM049004    CAJ17242.1    AM049005    CAJ17243.1    KQ976538    KYM81312.1    APGK01053399    BT127048    KB741223    KB631623    AEE62010.1    ENN72377.1    ERL84744.1    GDJX01001764    JAT66172.1    GAMC01000819    JAC05737.1    GFDG01001482    JAV17317.1    KQ434869    KZC09262.1    HE582160    CCD28234.1    KA644537    AFP59166.1    CP012528    ALC49848.1    CH933812    EDW05946.1    GDAI01001315    JAI16288.1    GDHF01019821    JAI32493.1    AM049007    CAJ17245.1    GEZM01048483    JAV76549.1    GL888450    EGI60719.1    CH940653    EDW62301.1    GFDG01001485    JAV17314.1    GALX01003827    JAB64639.1    KQ971379    EEZ97360.2    AM049006    CAJ17244.1    CH479190    EDW25784.1    OUUW01000019    SPP89311.1    GEBQ01003010    JAT36967.1    KQ435881    KOX69807.1    GEBQ01000040    JAT39937.1    GECZ01000457    JAS69312.1    EZ419725    ACY69898.1    CH379063    EAL32447.2    CH954180    EDV47380.1    KQS30469.1    CM000366    EDX17259.1    AE014298    AHN59415.1    AHN59416.1    AY231779    CM000162    AAR09802.1    EDX01017.1    KRK05879.1    X82782    AY089570    GFTR01004402    JAW12024.1    CH902632    EDV32892.1    CH916370    EDW00111.1    CH963851    EDW75377.1    CVRI01000063    CRL04371.1    GBGD01002539    JAC86350.1    AM049003    CAJ17241.1    GEMB01000174    JAS02940.1   

Proteomes

UP000005204    UP000007151    UP000218220    UP000283053    UP000053240    UP000053268    + More
UP000027135    UP000192223    UP000053825    UP000245037    UP000291343    UP000235965    UP000215335    UP000000311    UP000005203    UP000078542    UP000036403    UP000078492    UP000078200    UP000092460    UP000092445    UP000092444    UP000078541    UP000005205    UP000037069    UP000053097    UP000279307    UP000242457    UP000075809    UP000092443    UP000091820    UP000078540    UP000019118    UP000030742    UP000095300    UP000076502    UP000095301    UP000092553    UP000009192    UP000007755    UP000008792    UP000007266    UP000008744    UP000268350    UP000053105    UP000001819    UP000008711    UP000192221    UP000000304    UP000000803    UP000002282    UP000007801    UP000001070    UP000007798    UP000183832   

PRIDE

Q5UAT3    A0A088A266    X2JCS6    P46223   

Pfam

PF01248   Ribosomal_L7Ae

Interpro

IPR004037   Ribosomal_L7Ae_CS        + More
IPR001921   Ribosomal_L7A/L8       
IPR038524   Ribosomal_L7A/L8_sf       
IPR029064   L30e-like       
IPR004038   Ribosomal_L7Ae/L30e/S12e/Gad45       
IPR018492   Ribosomal_L7Ae/L8/Nhp2       

SUPFAM

SSF55315   SSF55315       

Gene 3D

3.30.1330.210    

ProteinModelPortal

Q5UAT3   A0A1E1WL93   A7KCX2   G0ZEG5   A0A212EWY1   D1LYP7   + More
A0A2A4J6E1   A0A437BIM5   A0A2H1WFE5   E7DZ47   A0A2W1BC86   A0A3G1T1E6   I4DLX6   A0A194RF45   I6P4Z9   I4DIC9   A0A194PRP6   A9LST0   R4V0R1   A0A067RS20   A0A1W4WH60   A0A0L7RG15   A0A2P8YQ52   A0A348G675   G8CV16   A0A2J7RM16   A0A232FH31   E2AAD7   Q56FL4   A0A310SC78   B6SI06   V9IKQ0   A0A088A266   A0A195CT23   A0A411G7M1   E9I8Z1   A0A0A1WNM0   D1M825   A0A0J7NQK1   A0A195E3I2   A0A1A9UYA7   A0A1B0AWZ2   A0A1A9Z9F7   D3TQZ6   A0A195F328   A0A158P1G6   A0A0L0BZW6   A0A026X2G5   A0A0X8NRF1   A0A2A3E9P2   A0A151X7B4   A0A1A9Y508   A0A0K8TVW4   A0A034WMI3   Q4GXL9   A0A1A9VZR4   Q4GXL8   A0A151I3B8   J3JUY3   A0A1D1ZGQ6   W8CB33   A0A1I8PFT9   A0A1L8EF06   A0A154PBM6   H6S4A4   T1P7Q1   A0A0M5JAY7   B4L6F0   A0A0K8TQ65   A0A0K8V124   Q4GXL6   A0A1Y1LSB3   F4WYI7   B4M825   A0A1L8EF72   V5GKN2   D6X3W3   Q4GXL7   B4GTB4   A0A3B0KVC9   A0A1B6MLZ6   A0A0M8ZS30   A0A1B6MVJ6   A0A1B6H3P7   D1FPH5   Q29J55   B3NXS9   A0A1W4VSC2   B4R5M2   X2JCS6   Q6XIQ0   P46223   A0A224XLR3   B3MZ48   B4JKK8   B4MTD8   A0A1J1IVS4   A0A069DR70   Q4GXM0   A0A171B7S8  

PDB

4V6W     E-value=5.6251e-82,     Score=773

KEGG

692662    K02936 large subunit ribosomal protein L7Ae | (RefSeq) RpL7A; ribosomal protein L7A

PATHWAY

03010    Ribosome - Bombyx mori (domestic silkworm)

GO

GO:0005840   GO:0042254   GO:1990904   GO:0003723   GO:0022625   GO:0000470   GO:0003735   GO:0022626   GO:0002181   GO:0030529   GO:0003676   GO:0046872   GO:0007219   GO:0007275   GO:0050793   GO:0016876   GO:0043039  

Length:

268

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.02564

Exp number, first 60 AAs:

0

Total prob of N-in:

0.26739

outside

1  -  268

 

 

Pi

219.571439

Theta

173.770588

Tajima's D

0.821933

CLR

0.229259

CSRT

0.605669716514174

Interpretation

Uncertain