Silkworm Genome Informatics Database

Gene

KWMTBOMO08695

Pre Gene Modal

BGIBMGA007658

Annotation

PREDICTED:_uncharacterized_protein_LOC101741494_[Bombyx_mori]

Location

Bomo_Chr15(+):2589626-2652059 View in EpiBrowser

Location in the cell

Extracellular Reliability : 1.411 Nuclear Reliability : 1.774

CDS

ATGCCAAATAGTTCTAGTCTACTATGTGGTCGTACGAACAAGAAGGACTTAGGACTGAACTCCGCTACCGGAACGGCCCTCGCTCTTGCCTTGGTGAGGCCTCCGACTGCTCCACTGGCGCCTTGTCAGCTGAATCTGTCAGCTCCGGAAGCCACCGCTTTTGCCGTTCGACTTATTGATGTTAAGGAATCATTGTCCGATTGGGAGCGGGGCTTCACCGAGCTTCAGGCGTCAGGAGCCGCCGGCCGCAAGTGGAGCGCGCGGGCTCCAGCTCACGCACAAGACACCGCTACCGACCAAGCAGCGCCCGCCAATAACAACACTGACGCTTGTAAATTGCTTGTGTACGTGTCTGATGCGAAGAATCCAGCATGGCGTTTGTCGTTATGTGGTGGGAACTCGGTGGCCATCGCTGCAAGAGCTGGAACGAAGCTGCTGCCGCCGAAGATCAAGATAGTCTGGAATCCACCCAGCTCGCCATACCAACATACAGAGAAACTGCGTCTCGTGGTTGCCGCTGTTTATAGTGGTGCCGTTTGTAGCAATGAGTCTCAGTTCGTATGTGGCGCAACGAATCTCTGCGTTTCTTCGTATTTGGTCTGCGATGGAGTCCGCCACTGTCCCGGCGGAGAAGATGAGGACCCTAGTGCTTGTTCTCATAGACGGGACCCTCCTCTGCTGGAACTCCTCAGGAGGTTTGCTGCCAGAAATCAAGAGCTGCTCGGTCTGGACCAGCCTGAAGGCATAACAAAGCCTTCAGTCATAATGAAGATCAGTGAAAGTGAGAAGTCTTCGAACGCGTTCATGGAGTTCGCGGCTGCCCTGAAGCCGTACGGACCTTGGAGCTACCTCGTGGTCGGGATGCTGGTCTGCGCCACCATACTCATGTTCTGTCTGGCTTGGGAATGTTGCTGTAAGCGCTCCAAGCCTTCGGATACCCCCCTCAACATGCCGGCCTCGTGTATCGACCTATCACCGACCGTCACAGTGACGGCTGCCTCGCAACAGCTGTTCACGCAGCCCCTGCCCCCAACCCCTCCCGAGTACGAGCCGCCCCCGTCGTACGCCTCCCTCTTCCCTAGAGCTTTCAAATCATCCCCCACTCCGGTACCGCACTGCTCGCACCAAGAGCCCCCGGATTGA

Protein

MPNSSSLLCGRTNKKDLGLNSATGTALALALVRPPTAPLAPCQLNLSAPEATAFAVRLIDVKESLSDWERGFTELQASGAAGRKWSARAPAHAQDTATDQAAPANNNTDACKLLVYVSDAKNPAWRLSLCGGNSVAIAARAGTKLLPPKIKIVWNPPSSPYQHTEKLRLVVAAVYSGAVCSNESQFVCGATNLCVSSYLVCDGVRHCPGGEDEDPSACSHRRDPPLLELLRRFAARNQELLGLDQPEGITKPSVIMKISESEKSSNAFMEFAAALKPYGPWSYLVVGMLVCATILMFCLAWECCCKRSKPSDTPLNMPASCIDLSPTVTVTAASQQLFTQPLPPTPPEYEPPPSYASLFPRAFKSSPTPVPHCSHQEPPD

Uniprot

A0A2H1V9F4 A0A212FB45 A0A2A4JT57 A0A2W1BL88 A0A3S2LWD6 A0A182H9B4 + More
A0A182JN29 A0A182QPT6 A0A182WME7 A0A182RV12 A0A182YC14 A0A182PKR3 A0A1S4FD11 A0A1J1J224

Pubmed

22118469 28756777 26483478 25244985 17510324

EMBL

ODYU01001115 SOQ36874.1 AGBW02009378 OWR50964.1 NWSH01000676 PCG74878.1 + More
KZ150050 PZC74435.1 RSAL01000001 RVE55173.1 JXUM01030009 JXUM01030010 JXUM01030011 KQ560870 KXJ80549.1 AXCN02001016 CVRI01000065 CRL05820.1

Proteomes

UP000007151 UP000218220 UP000283053 UP000069940 UP000249989 UP000075880 + More
UP000075886 UP000075920 UP000075900 UP000076408 UP000075885 UP000183832

Pfam

PF00057 Ldl_recept_a

Interpro

IPR023415   LDLR_class-A_CS        + More
IPR002172   LDrepeatLR_classA_rpt
IPR036055   LDL_receptor-like_sf

SUPFAM

SSF57424 SSF57424

CDD

cd00112 LDLa

ProteinModelPortal

A0A2H1V9F4 A0A212FB45 A0A2A4JT57 A0A2W1BL88 A0A3S2LWD6 A0A182H9B4 + More
A0A182JN29 A0A182QPT6 A0A182WME7 A0A182RV12 A0A182YC14 A0A182PKR3 A0A1S4FD11 A0A1J1J224

PDB

5M3L E-value=0.0125964, Score=90

KEGG

101741494 no KO assigned | (RefSeq) uncharacterized LOC101741494

GO

GO:0016021 GO:0005515 GO:0003676 GO:0008152 GO:0006629 GO:0007219 GO:0007275 GO:0050793 GO:0016876 GO:0043039

Length:

380

Number of predicted TMHs:

1

Exp number of AAs in TMHs:

22.67426

Exp number, first 60 AAs:

0.09123

Total prob of N-in:

0.00556

outside

1 - 278

TMhelix

279 - 301

inside

302 - 380

Pi

230.611176

Theta

169.162191

Tajima's D

1.155811

CLR

0.3521

CSRT

0.700464976751162

Interpretation

Uncertain

Sequence

Summary

Ontologies

Topology

Population Genetic Test Statistics