Silkworm Genome Informatics Database

Gene

KWMTBOMO08691 Validated by peptides from experiments

Pre Gene Modal

BGIBMGA007656

Annotation

RNA-binding_protein_[Bombyx_mori]

Location

Bomo_Chr15(+):2548372-2551382 View in EpiBrowser

Location in the cell

Nuclear Reliability : 4.004

CDS

ATGTCTCGCTACAGAGAATGGGATCTTTCTTGCAAAGTGTACGTGGGCAACTTGGGTACTAATGCGTCTAAATATGAAATAGAAAAAATATTTTCTAAATACGGTAACATACGTAACGTATGGGTAGCTCGAAATCCGCCCGGATTTGCATTTGTAGAATTCGAAGACCCCCGTGATGCTGAAGACTCTGTTCGTGGACTTGATGGAACACGCTGCTGTGGCACCAGGATTCGTGTCGAAATGTCAAATGGTCGCACAAGGAGAGACCGCAGCAGGTCACGCAGTCGTAGTCCCCGCCGCCGATCATACTCTCGCGGCCGGTCAATGTCTCCACGACGGTCGCCTTCAGTTCGCCGTCGCTCTCCTTCTCCCCGCCGTTCACGATCACGCGACCGTCGCAGTCGTTCTGACAGCAAAACCAGGTATTGA

Protein

MSRYREWDLSCKVYVGNLGTNASKYEIEKIFSKYGNIRNVWVARNPPGFAFVEFEDPRDAEDSVRGLDGTRCCGTRIRVEMSNGRTRRDRSRSRSRSPRRRSYSRGRSMSPRRSPSVRRRSPSPRRSRSRDRRSRSDSKTRY

Uniprot

NA

ProteinModelPortal

NA

PDB

2HVZ E-value=9.93095e-27, Score=292

KEGG

733053 no KO assigned | (RefSeq) Rbp1; RNA-binding protein 1

GO

GO:0000166 GO:0003676 GO:0008152 GO:0006629 GO:0007219 GO:0007275 GO:0050793 GO:0016876 GO:0043039

Length:

142

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.00034

Exp number, first 60 AAs:

0.00034

Total prob of N-in:

0.37763

outside

1 - 142

Pi

152.32003

Theta

173.899926

Tajima's D

-0.560743

CLR

1.438875

CSRT

0.229038548072596

Interpretation

Uncertain

Source	Sequence	Identity	Evalue
26822097	VYVGNIGTNASK	100.00	4e-09
26280517	NPPDATITMDGK	100.00	4e-09
26822097	VPIIGAIPIEPR	95.24	9e-09
26280517	NPDCIIPIK	95.24	9e-09
28467696	NPPAPQPAVHIQGQEPITSTMIAAAPIQEQK	95.24	9e-09
28556443	NPPGFAFVEFEDPR	100.00	2e-04
28556443	NPPGFAFVEFEDPR	100.00	2e-04
26822097	NPPGFAFVEFEDPRDAEDSVR	100.00	4e-04
26280517	NPAITDVADKIK	100.00	4e-04
28556443	NPPGFAFVEFEDPR	100.00	4e-04
28556443	NPPGFAFVEFEDPR	100.00	4e-04
28556443	VYVGNLGTNASK	100.00	4e-04
28556443	NPPGFAFVEFEDPR	100.00	4e-04
28556443	VYVGDLGNNASKPELEDAFSYYGPLR	100.00	4e-04
28556443	TGYTLDVTTGQR	100.00	4e-04

Sequence

Summary

Ontologies

Topology

Population Genetic Test Statistics

Multiple alignment of Orthologues

Gene Tree