Gene

KWMTBOMO08676

Annotation

PREDICTED:_RNA-directed_DNA_polymerase_from_mobile_element_jockey-like_[Amyelois_transitella]

Location

Bomo_Chr15(-):2021787-2024396      View in EpiBrowser

Location in the cell

Extracellular   Reliability : 1.414 PlasmaMembrane   Reliability : 1.656

CDS

ATGAATAGCAGCGGTTCTATTTATAATATAGTTAGTTTCAACTGCAAAGGAGTGAAACGATCCGTGGAACATGTAAGACAGCTGTGTCGGACGTCGGATATAATCGCGTTACAAGAGACGTGGTTATTGCCGGACGATTTACAGTTTCTCAGTGCCATTGATAGCGAATATGGCTGCACCGGGACTTCGGCCGTAGATACTGCGGCCGGGATACTCAGGGGGCGTCCATACGGAGGAGTGGCGCTACTATGGAAGAAAAGTATCTTTCAAAATGTGTCGATAGTGCAGTGTGATAACGCGCGTGTGTGTGCTATAAAAGTAACAATAGATCAGAGATCGTTATTGGTGTTCAGTATTTATATGCCTACGGATAATGCAGTGAACCTAACGGAGTTCATGGATTGCCTCAGCCTGATGAGCGCTATTATTAGTAACGAAAATATCGAATCAGTGTATATACTCGGCGATTTTAACGCCCATCCTAATGAACCTTTCTACAGGGAGTTGGCATGTGTCTGTGGGGAATTAGGATGGACTTGTGCGGACGTTGAACTATTAGGTGTAAATTCAGACACGTATAGTTTTATTAGTGAGGCGAATGGGTCCAGACGTTGGCTGGACCACTGTGTAGTCACGAAGTCAGCTATGCAGACCATTGTCAATACGTATATACTGTATGATGTCTTGTGGTCTGACCACTTTCCAGTAGTAGCACAGTGTGATTTTAACACTATAAAACCGAAATTTAATAATGTTACTCAATTGTGTAGTACTGTGCGATGGGGGGACAGAAAACCTGAGCAAATTGAATTTTATCATAAGATATGTCATGATAAACTGAGACAGATAGATTTTCCTGGCATTCTAAGTGATTGTTGTGATTGTGTTTGTAGTAATTCTGACCACAGACACATTTTAGATAAAATGTATCATGATATTGTTGACGTACTATGTCAAGCGGCTAGCGACAGTTATTCCCGTAGCAGATTTAATTGTAAAAAACCTGTTATTGGCTGGAATCGATATGTTAGTGATGCTCACGGGGAGGCGAGGTGTAAGTTTATTCTATGGGTGTGGCATGGTAAGCCGAGGTCGGGTCGTGTTTGGAAAGAAATGCAAGAGAGTAGGAAAATTTTTAAATCACGTCTGAAATGGTGTCAAAACCACAGCGAGCAGTTAAGAATGGATATACTCGCGTCTCATCACTCCAAGCACGATTTTCACAGCTTCTGGAAATCTACCACTAAACTTAATGGTAAACCAGGCCTGCCCGTGAGCGTCGGTGGTATAAGTGATCACGATGGCATCACGAATATGTTTAGGGAACACTTTGCGGTTAGTTCGCCATTGGGACCATCACAGTCAGGGTGTGTGGGTGATTCTCAGGGGCGGATAGTTACTGCTAGGTTTACGGCTAACGAAGTTAGAAAAGTTATTAACTCCATGTCACGGGGTAAGTCTCCGGGTCATGACGAGCTGAGCATAGAACACCTAAAGTATGCCGGTGTACACTTGCCCCGAGTCTTGGTTATGTTCTACAATTTATGTATAGGACACTCCTACTTGCCTGAGGAGATGTTGAAGACTGTGGTAGTGCCAATTGTGAAGAATAGGACCGGGGATATATGTGATAAAACCAATTACAGACCCATCTCGTTAGCAACTATCATAGCGAAAGTGCTTGACAGTTTGCTTAATATACAACTTGATAAATATCTTCAGATACATGATAACCAGTTTGGTTTTAAATCAGGAATGTCTACAGAAATAGCCGTATTGTGTTTAAAGCAAACTGTCAAGTACTATACTGATCGAAAAACTCCAATTTTTGCCTGTTTCCTCGATTTATCAAAGGCATTCGACCTGGTTTGTTATGACATCTTATGGCAAAAACTGAATAATACTAAAATGCCGAAAGAACTAGTACAGATATTCAAATATTGGTACGCCAACCAGCTGAACGTGGTACGATGGTCGGGTGTCTATTCGAGGCCATACGGGATGGAGTGCGGGGTGAGGCAAGGGGGGTTGACCTCGCCCAAGCTCTTCAACCTGTATGTGAATGCTCTAATCGAGGAGCTCAGCAGTACTCATGTCGGCTGCCATATTGATGAAATATGTCTCAACAATATCAGTTATGCTGATGACATGGTGCTGCTGAGTGCGTCGGCCTGTGGGCTGTCTAAGCTGCTTGGCATATGTGAAAGGTATGCTCTAAGTCACGGTCTGGTGTATAATACAAAGAAAAGTGAGTGTATGGTGTTTCAGGCCAGAGGCAGGTGTCTGGATAACATTCCCTCCGTCAAACTGAATGGTACGCCACTGCGCAGAGTAGACAAGTTTAAATACCTAGGACACTTTGTAACCTCTGACCTGAGGGATGATACAGACATTGAGCGGGAGCGGAGAGCGCTGTCTCCTGTGGGTGTTCTATAG

Protein

MNSSGSIYNIVSFNCKGVKRSVEHVRQLCRTSDIIALQETWLLPDDLQFLSAIDSEYGCTGTSAVDTAAGILRGRPYGGVALLWKKSIFQNVSIVQCDNARVCAIKVTIDQRSLLVFSIYMPTDNAVNLTEFMDCLSLMSAIISNENIESVYILGDFNAHPNEPFYRELACVCGELGWTCADVELLGVNSDTYSFISEANGSRRWLDHCVVTKSAMQTIVNTYILYDVLWSDHFPVVAQCDFNTIKPKFNNVTQLCSTVRWGDRKPEQIEFYHKICHDKLRQIDFPGILSDCCDCVCSNSDHRHILDKMYHDIVDVLCQAASDSYSRSRFNCKKPVIGWNRYVSDAHGEARCKFILWVWHGKPRSGRVWKEMQESRKIFKSRLKWCQNHSEQLRMDILASHHSKHDFHSFWKSTTKLNGKPGLPVSVGGISDHDGITNMFREHFAVSSPLGPSQSGCVGDSQGRIVTARFTANEVRKVINSMSRGKSPGHDELSIEHLKYAGVHLPRVLVMFYNLCIGHSYLPEEMLKTVVVPIVKNRTGDICDKTNYRPISLATIIAKVLDSLLNIQLDKYLQIHDNQFGFKSGMSTEIAVLCLKQTVKYYTDRKTPIFACFLDLSKAFDLVCYDILWQKLNNTKMPKELVQIFKYWYANQLNVVRWSGVYSRPYGMECGVRQGGLTSPKLFNLYVNALIEELSSTHVGCHIDEICLNNISYADDMVLLSASACGLSKLLGICERYALSHGLVYNTKKSECMVFQARGRCLDNIPSVKLNGTPLRRVDKFKYLGHFVTSDLRDDTDIERERRALSPVGVL

Similarity

Belongs to the peptidase S1 family.

Uniprot

A0A3S2PB24   A0A2W1BS65   A0A2W1BJX4   S4NNA8   A0A2W1BC01   A0A3B3I5I8   + More
A0A3B3HNF2   A0A3B3IJ19   A0A3P9KQQ7   A0A3P8PZH5   A0A1A8UAJ7   A0A3P8RHR9   A0A3B3I0P1   A0A146ZPI4   A0A0S7EYH5   A0A0P4VXS2   A0A3C1S1R4   A0A3C1S3F5   A0A3C1S0J5   A0A354GFC3   A0A354GI36   A0A1Y1JWU5   A0A146KQ35   A0A0A9VZM2   A0A3M7QTR3   A0A224XIQ4  

Pubmed

28756777    23622113    17554307    30148503    28004739    26823975    + More
25401762    30375419   

EMBL

RSAL01000132    RVE46368.1    KZ149956    PZC76465.1    KZ150039    PZC74591.1    + More
GAIX01014011    JAA78549.1    KZ150625    PZC70440.1    HAEJ01003895    SBS44352.1    GCES01018090    JAR68233.1    GBYX01473474    GBYX01473473    GBYX01473472    GBYX01473468    GBYX01473467    GBYX01473465    JAO08192.1    GDRN01099830    JAI58698.1    DMQF01000358    HAO15222.1    DMQF01000507    HAO15811.1    DMQF01000051    HAO14134.1    DNUT01000105    HBI39711.1    DNUT01000366    HBI40674.1    GEZM01098732    JAV53782.1    GDHC01021277    JAP97351.1    GBHO01042545    GBRD01013465    JAG01059.1    JAG52361.1    REGN01005167    RNA14504.1    GFTR01008507    JAW07919.1   

Proteomes

UP000283053    UP000001038    UP000265180    UP000265100    UP000276133   

Pfam

PF00078   RVT_1        + More
PF14529   Exo_endo_phos_2
PF12832   MFS_1_like
PF00089   Trypsin
PF00057   Ldl_recept_a
PF03372   Exo_endo_phos
PF01392   Fz

Interpro

IPR024989   MFS_assoc_dom        + More
IPR005135   Endo/exonuclease/phosphatase       
IPR036691   Endo/exonu/phosph_ase_sf       
IPR036259   MFS_trans_sf       
IPR000477   RT_dom       
IPR020846   MFS_dom       
IPR033116   TRYPSIN_SER       
IPR036790   Frizzled_dom_sf       
IPR020067   Frizzled_dom       
IPR009003   Peptidase_S1_PA       
IPR001314   Peptidase_S1A       
IPR001190   SRCR       
IPR001254   Trypsin_dom       
IPR018114   TRYPSIN_HIS       
IPR036055   LDL_receptor-like_sf       
IPR002172   LDrepeatLR_classA_rpt       

SUPFAM

SSF103473   SSF103473        + More
SSF56219   SSF56219       
SSF50494   SSF50494       
SSF57424   SSF57424       
SSF63501   SSF63501       

Gene 3D

3.60.10.10     1.10.2000.10     4.10.400.10    

CDD

cd06174  MFS
cd00112  LDLa
cd00190  Tryp_SPc

ProteinModelPortal

A0A3S2PB24   A0A2W1BS65   A0A2W1BJX4   S4NNA8   A0A2W1BC01   A0A3B3I5I8   + More
A0A3B3HNF2   A0A3B3IJ19   A0A3P9KQQ7   A0A3P8PZH5   A0A1A8UAJ7   A0A3P8RHR9   A0A3B3I0P1   A0A146ZPI4   A0A0S7EYH5   A0A0P4VXS2   A0A3C1S1R4   A0A3C1S3F5   A0A3C1S0J5   A0A354GFC3   A0A354GI36   A0A1Y1JWU5   A0A146KQ35   A0A0A9VZM2   A0A3M7QTR3   A0A224XIQ4  

PDB

5HHL     E-value=0.00102315,     Score=103

KEGG

105841997    no KO assigned | (RefSeq) uncharacterized LOC105841997

GO

GO:0016021   GO:0004252   GO:0005044   GO:0016020   GO:0003964   GO:0004519  

Length:

811

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.03178

Exp number, first 60 AAs:

3e-05

Total prob of N-in:

0.00062

outside

1  -  811

 

 

Pi

37.160711

Theta

49.292578

Tajima's D

-0.716282

CLR

242.308164

CSRT

0.198890055497225

Interpretation

Uncertain