Silkworm Genome Informatics Database

Gene

KWMTBOMO08664 Validated by peptides from experiments

Pre Gene Modal

BGIBMGA007941

Annotation

PREDICTED:_uncharacterized_protein_LOC106108022_[Papilio_polytes]

Location

Bomo_Chr15(-):1764882-1766456 View in EpiBrowser

Full name

Casein kinase II subunit beta

Location in the cell

Nuclear Reliability : 2.535

CDS

ATGGCTTTGCTGTTTGACGATATAGATGCGTCTCATATGTTGGACGATATAGAGGAAAGTATCGAAGAAGACTTCGAAGCCGAAAATAAGCCAGAGAATGCTTACATATCTACTATGTTCAGATGTCAATCTACGGAAGCCACACACCTTTGCATTATGGATGCGGACCTTAAACTTAACAATGAAAATAACTATGACATAGGGGGTGCATACAGAAAAGATAAGCCAGAATTTTGGTTTTACTACACCACAACTATGTGTCCTAAACATGTTTACTTGTTGAATTTGTTTGTGTGTCATAGACAAAGCGGGACTTTTGCCCTCGGAGTACCAAACTCGAGTGAAATGTCGCACAATAAACAAAGCCAATACAAAGAGACAACTCTTCAAAATAATTTGTCCTGGTATTATTACAAGAGTACATTGAAAGATGAAAAATATTACATCAAAACTTATGCTTTTACTCTCCAAGACTTAAAAAACTTAAGAAATAGTACATTGCTCATTCCTTTGTGTATCAAGATTGATCAAAGCATAGCACTAAATGAGCAAATTGAGAGATCAATCAGATTTGACTTTGATATAGTAACTTCAATTTCAAAGCAAGAAAAACCTGATTATGTTCTAATATCTAAAAGTGGTAAGGAATATCCAGTTCACAAATTAATATTAGCTGCCCAGAGCCCAGTACTCAGAGCAAAAGCACGAGATTCTAAATCAAATTGTATCAATTTGGATACTGACAATGAGGAAATTGAAATTTTACTTGAATTTATATACACTGGAACCCTTAAAGAGCTAAAAGGCTTTTCAATGGCAGAATTAGGTCAGAAATTACTGGAAATATATGATAAATATCAAATAAAGTCTCTGGACACACTGATTCAATTACTTCTAGTAAGAGTTATAGATGTAAACAATGCAGTGGATATGGTCAAGATAGCCATGAATCACAATTTGATGGACCTGAAGCAAACTGTTTTCAAATTTATTAAGAATAATCCACAAGTATTGAAGACTAAAAGCTGGAAAGAATTAAACAATGCAGAAGTGGTTAAAGCTCTCTATCAATTTTCCAACACATAG

Protein

MALLFDDIDASHMLDDIEESIEEDFEAENKPENAYISTMFRCQSTEATHLCIMDADLKLNNENNYDIGGAYRKDKPEFWFYYTTTMCPKHVYLLNLFVCHRQSGTFALGVPNSSEMSHNKQSQYKETTLQNNLSWYYYKSTLKDEKYYIKTYAFTLQDLKNLRNSTLLIPLCIKIDQSIALNEQIERSIRFDFDIVTSISKQEKPDYVLISKSGKEYPVHKLILAAQSPVLRAKARDSKSNCINLDTDNEEIEILLEFIYTGTLKELKGFSMAELGQKLLEIYDKYQIKSLDTLIQLLLVRVIDVNNAVDMVKIAMNHNLMDLKQTVFKFIKNNPQVLKTKSWKELNNAEVVKALYQFSNT

Description

Plays a complex role in regulating the basal catalytic activity of the alpha subunit.

Subunit

Tetramer of two alpha and two beta subunits.

Similarity

Belongs to the casein kinase 2 subunit beta family.

Uniprot

A0A1E1WIA4 A0A1E1W2D5 A0A2A4K748 A0A3S2PLW2 A0A2H1WPM1 A0A0N0PEH5 + More
A0A212F8S7 A0A194PQ00 A0A2A4K6Q1 A0A437BXK8 A0A1E1WJI1 S4PBF8 H9JDP5 A0A194PPM1 A0A212F8T8 A0A2H1WPJ0 A0A0N1IIL1 A0A0L7L3E0 A0A087TA00 A0A061EM90 M0SWX6 A0A3Q0I158 I2CMJ4

Pubmed

26354079 22118469 23622113 19121390 26227816 23731509 + More
22801500 23917264

EMBL

GDQN01004330 JAT86724.1 GDQN01009993 JAT81061.1 NWSH01000087 PCG79734.1 + More
RSAL01000001 RVE55195.1 ODYU01010079 SOQ54926.1 KQ459781 KPJ19974.1 AGBW02009681 OWR50131.1 KQ459596 KPI95392.1 PCG79749.1 RVE55197.1 GDQN01003966 JAT87088.1 GAIX01004641 JAA87919.1 BABH01003226 KPI95391.1 OWR50133.1 SOQ54927.1 KPJ19977.1 JTDY01003289 KOB69794.1 KK114224 KFM61939.1 CM001882 EOY05497.1 JQ658376 AFJ68127.1

Proteomes

UP000218220 UP000283053 UP000053240 UP000007151 UP000053268 UP000005204 + More
UP000037510 UP000054359 UP000026915 UP000012960 UP000228380

PRIDE

H9JDP5

Pfam

PF00651   BTB        + More
PF01214   CK_II_beta
PF00917   MATH

Interpro

IPR011333   SKP1/BTB/POZ_sf        + More
IPR000210   BTB/POZ_dom
IPR016149   Casein_kin_II_reg-sub_N
IPR000704   Casein_kinase_II_reg-sub
IPR035991   Casein_kinase_II_beta-like
IPR008974   TRAF-like
IPR002083   MATH/TRAF_dom
IPR034089   SPOP_C
IPR034090   BPM_C

SUPFAM

SSF54695   SSF54695        + More
SSF57798   SSF57798
SSF49599   SSF49599

Gene 3D

1.10.1820.10 2.60.210.10

CDD

cd14734  SPOP_C
cd00121  MATH
cd14736  SPOP_C_like_plant

ProteinModelPortal

A0A1E1WIA4 A0A1E1W2D5 A0A2A4K748 A0A3S2PLW2 A0A2H1WPM1 A0A0N0PEH5 + More
A0A212F8S7 A0A194PQ00 A0A2A4K6Q1 A0A437BXK8 A0A1E1WJI1 S4PBF8 H9JDP5 A0A194PPM1 A0A212F8T8 A0A2H1WPJ0 A0A0N1IIL1 A0A0L7L3E0 A0A087TA00 A0A061EM90 M0SWX6 A0A3Q0I158 I2CMJ4

PDB

4J8Z E-value=8.02804e-10, Score=152

KEGG

101745289 K10523 speckle-type POZ protein | (RefSeq) BTB/POZ and MATH domain-containing protein 2-like

PATHWAY

04341 Hedgehog signaling pathway - fly - Bombyx mori (domestic silkworm)

GO

GO:0019887 GO:0005956 GO:0016301 GO:0005829 GO:0071472 GO:0042631 GO:0005515 GO:0006418 GO:0000166 GO:0004820 GO:0005737 GO:0006426 GO:0003676 GO:0016876 GO:0043039

PANTHER

PTHR11740

Length:

361

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.11798

Exp number, first 60 AAs:

0

Total prob of N-in:

0.00575

outside

1 - 361

Pi

58.000295

Theta

169.713484

Tajima's D

-1.827628

CLR

11525.4446

CSRT

0.0269486525673716

Interpretation

Uncertain

Sequence

Summary

Ontologies

Topology

Population Genetic Test Statistics